Correction: Genetic dissection of drought and heat tolerance in chickpea through genome-wide and candidate gene-based association mapping approaches (PLoS ONE (2014) 9:5 (e96758) DOI: 10.1371/journal.pone.0096758);Genetic dissection of drought and heat tolerance in chickpea through genome-wide and candidate gene-based association mapping approaches

PLoS ONE

Volumn 9, Issue 5, 2014, Pages

  Thudi, Mahendar ^a   Upadhyaya, Hari D ^a   Rathore, Abhishek ^a   Gaur, Pooran Mal ^a   Krishnamurthy, Lakshmanan ^a   Roorkiwal, Manish ^a,b   Nayak, Spurthi N ^a   Chaturvedi, Sushil Kumar ^c   Basu, Partha Sarathi ^c   Gangarao, N V P R ^d   Fikre, Asnake ^e   Kimurto, Paul ^f   Sharma, Prakash C ^b   Sheshashayee, M S ^g   Tobita, Satoshi ^h   Kashiwagi, Junichi ⁱ   Ito, Osamu ^j   Killian, Andrzej ^k   Varshney, Rajeev Kumar ^a  

^a INTERNATIONAL CROPS RESEARCH INSTITUTE FOR THE SEMI ARID TROPICS ICRISAT   (India)

^b GURU GOBIND SINGH INDRAPRASTHA UNIVERSITY   (India)

^c INDIAN INSTITUTE OF PULSES RESEARCH   (India)

^d INTERNATIONAL CROPS RESEARCH INSTITUTE FOR THE SEMI ARID TROPICS ICRISAT   (Kenya)

^e ETHIOPIAN INSTITUTE OF AGRICULTURAL RESEARCH   (Ethiopia)

^f EGERTON UNIVERSITY   (Kenya)

^g UNIVERSITY OF AGRICULTURAL SCIENCES   (India)

^h JAPAN INTERNATIONAL RESEARCH CENTER FOR AGRICULTURAL SCIENCES   (Japan)

ⁱ HOKKAIDO UNIVERSITY   (Japan)

^j UNITED NATIONS UNIVERSITY   (Japan)

^k DArT Pty Ltd   (Australia)

more..

Author keywords

[No Author keywords available]

Indexed keywords

AFRICA; ALLELE; AMDH GENE; ARTICLE; ASR GENE; BIOLOGICAL TRAIT; CAP2 GENE; CHICKPEA; CONTROLLED STUDY; DREB GENE; DROUGHT STRESS; DROUGHT TOLERANCE; ERECTA GENE; GENE FREQUENCY; GENE LINKAGE DISEQUILIBRIUM; GENE MAPPING; GENE SEQUENCE; GENETIC ASSOCIATION; GENETIC DISTANCE; GENETIC VARIABILITY; HEAT STRESS; HEAT TOLERANCE; INDIA; MARKER TRAIT ASSOCIATION; NONHUMAN; PHENOTYPE; PLANT GENE; PLANT GENOME; PLANT ROOT; POPULATION STRUCTURE; SINGLE NUCLEOTIDE POLYMORPHISM; CHROMOSOME MAP; CICER; DROUGHT; GENETICS; GENOTYPE; GROWTH, DEVELOPMENT AND AGING; QUANTITATIVE TRAIT LOCUS; TEMPERATURE;

MICROSATELLITE DNA;

ALLELES; CHROMOSOME MAPPING; CICER; DROUGHTS; GENE FREQUENCY; GENOME, PLANT; GENOTYPE; LINKAGE DISEQUILIBRIUM; MICROSATELLITE REPEATS; PHENOTYPE; PLANT ROOTS; POLYMORPHISM, SINGLE NUCLEOTIDE; QUANTITATIVE TRAIT LOCI; TEMPERATURE;

EID: 84900397393     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0175609     Document Type: Erratum

References (52)

1. Varshney RK, Song C, Saxena RK, Azam S, Sheng Y, et al. (2013) Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nat Biotechnol 31: 240-246.
2. FAOSTAT (2013) http://faostat.fao.org/site/567/DextopDEfault.aspx?PageID= 567#ancor
3. Jukanti AK, Gaur PM, Gowda CLL, Chibbar RN (2012) Chickpea: Nutritional properties and its benefits. Brit J Nutr 108:S11-S26
4. Ahmad F, Gaur PM, Croser J (2005) Chickpea (Cicer arietinum L.) In: Singh RJ, Jauhar PP eds. Genetic resources, chromosome engineering, and crop improvement - grain legumes. CRC Press, pp 187-217.
5. Krishnamurthy L, Kashiwagi J, Upadhyaya HD, Gowda CLL, Gaur PM, et al. (2013) Partitioning coefficient - A trait that contributes to drought tolerance in chickpea. Field Crops Res 145: 354-365.
6. Toker C, Lluch C, Tejera NA, Serraj R, Siddique KHM, et al. (2007) Abiotic stresses In: Yadav SS, Redden R, Chen W, Sharma B eds. Chickpea breeding and management. CAB International, pp 474-496.
7. Wang J, Gan YT, Clarke F, McDonald CL (2006) Response of chickpea yield to high temperature stress during reproductive development. Crop Sci 46: 2171-2178. (Pubitemid 44525386)
8. Varshney RK, Hiremath P, Lekha P, Kashiwagi J, Balaji J, et al. (2009) A comprehensive resource of drought- and salinity responsive ESTs for gene discovery and marker development in chickpea (Cicer arietinum L.). BMC Genomics 10: 523.
9. Nayak SN, Zhu H, Varghese N, Datta S, Choi HK, et al. (2010) Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome. Theor Appl Genet 120: 1415-1441.
10. Thudi M, Bohra A, Nayak SN, Varghese N, Shah TM et al. (2011) Novel SSR markers from BAC-end sequences, DArT arrays and a comprehensive genetic map with 1,291 marker loci for chickpea (Cicer arietinum L.). PLoS ONE 6:e27275.
11. Hiremath PJ, Kumar A, Penmetsa RV, Farmer A, Schlueter JA, et al. (2012) Large-scale development of cost-effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes. Plant Biotechnol J 10: 716-732.
12. Varshney RK, Kudapa H, Roorkiwal M, Thudi M, Pandey MK, et al. (2012) Advances in genetics and molecular breeding of three legume crops of semi-arid tropics using next generation sequencing and high-throughput genotyping technologies. J Biosci 37: 811-820.
13. Jain M, Misra G, Patel RK, Priya P, Jhanwar S, et al. (2013) A draft genome sequence of the pulse crop chickpea (Cicer arietinum L.). Plant J 74: 714-719.
14. Varshney RK, Mir RR, Bhatia S, Thudi M, et al. (2014a) Integrated physical map with the genetic maps and reference genome sequence for chickpea (Cicer arietinum L.) improvement. Funct Integr Genomics DOI 10.1007/s10142-014- 0363-6.
15. Varshney RK, Thudi M, Nayak SN, Gaur PM, Kashiwagi J, et al. (2014) Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.) Theor Appl Genet 127: 445-461.
16. Vadez V, Krishnamurthy L, Thudi M, Anuradha C, Colmer TD, et al. (2012) Assessment of ICCV 26 JG 62 chickpea progenies shows sensitivity of reproduction to salt stress and reveals QTLs for seed yield and seed number. Mol Breed 30: 9-21.
17. Devasirvatham V, Tan DKY, Gaur PM, Raju TN, Trethowan RM (2012) High temperature tolerance in chickpea and its implications for plant improvement. Crop Pasture Sci 63: 419-428.
18. Yadav SS, Sandhu JS (2007) Area, production and distribution In: Yadav SS, Redden RJ Chen W eds. Chickpea breeding and management CABI International, pp 167-178.
19. Zhao K, Tung CW, Eizenga GC, Wright MH, Ali ML, et al. (2011) Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa. Nat Commun 2: 467.
20. Pasam RK, Sharma R, Malosetti M, van Eeuwijk FA, Haseneyer G, et al. (2012) Genome-wide association studies for agronomical traits in a worldwide spring barley collection. BMC Plant Biol 12: 16.
21. Morris GP, Ramu P, Deshpande SP, Hash CT, Shah T, et al. (2013) Population genomic and genome-wide association studies of agroclimatic traits in sorghum. Proc Natl Acad Sci 110: 453-458.
22. Li Y-H, Smulders MJM, Chang RZ, Qiu L-J (2011) Genetic diversity and association mapping in a collection of selected Chinese soybean accessions based on SSR marker analysis. Conserv Genet 12: 1145-1157.
23. Sakiroglu M, Sherman-Broyles S, Story A, Moore KJ, Doyle JJ, et al. (2012) Patterns of linkage disequilibrium and association mapping in diploid alfalfa (M. sativa L.). Theor Appl Genet 125: 577-590.
24. Shi C, Navabi A, Yu K (2011) Association mapping of common bacterial blight resistance QTL in Ontario bean breeding populations. BMC Plant Biol 11: 52.
25. Wilkening S, Chen B, Bermejo JL, Canzian F (2009) Is there still a need for candidate gene approaches in the era of genome-wide association studies? Genomics 93: 415-419.
26. Upadhyaya HD, Dwivedi SL, Baum M, Varshney RK, Udupa SM, et al. (2008) Genetic structure, diversity, and allelic richness in composite collection and reference set in chickpea (Cicer arietinum L.). BMC Plant Biol 8: 106.
27. Upadhyaya HD, Ortiz R (2001) A mini core subset for capturing diversity and promoting utilization of chickpea genetic resources in crop improvement. Theor Appl Genet 102: 1292-1298. (Pubitemid 32602176)
28. Roorkiwal M, Nayak SN, Thudi M, Upadhyaya HD, Brunel D, et al. (2014) Allele diversity for abiotic stress responsive candidate genes in chickpea reference set using gene based SNP markers. Front Plant Sci (Accepted)
29. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945-959. (Pubitemid 30397141)
30. Zhu C, Gore M, Buckler ES, Yu J (2008) Status and prospects of association mapping in plants. The Plant Genome 1: 15-20.
31. Somers DJ (2005) Molecular breeding and assembly of complex genotypes in wheat. Frontiers of Wheat Bioscience. The 100 memorial issue of wheat information service 235-246.
32. Lu Y, Yan J, Guimaraes CT, Taba S, Hao Z, et al. (2009) Molecular characterization of global maize breeding germplasm based on genome-wide single nucleotide polymorphisms. Theor Appl Genet 120: 93-115.
33. Cockram J, Jon W, Fiona JL, Vincent JL, Elena C et al. (2008) Association mapping of partitioning loci in barley. BMC Genet 9: 16.
34. Shehzad T, Hiroyoshi I, Kazutoshi O (2009) Genome-wide association mapping of quantitative traits in sorghum [Sorghum bicolor (L.) Moench] by using multiple models. Breeding Sci 59: 217-227.
35. Neumann K, Kobiljski B, Denčić S Varshney RK, Börner A (2011) Genome-wide association mapping: a case study in bread wheat (Triticum aestivum L.). Mol Breed 27: 37-58.
36. Gaur PM, Kumar J, Gowda CLL, Pande S, Siddique KHM, et al. (2008) Breeding chickpea for early phenology: Perspectives progress and prospects. In: Kharkwal MC ed. Food legumes for nutritional security and sustainable agriculture. Indian Society of Genetics and Plant Breeding, pp 39-48
37. Varshney RK, Thudi M, Nayak SN, Gaur PM, et al. (2014b) Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.). Theor Appl Genet 127: 445-462.
38. Campo S, Peris-Peris C, Montesinos L, Peñas G, Messeguer J, San Segundo B (2012). Expression of the maize ZmGF14-6 gene in rice confers tolerance to drought stress while enhancing susceptibility to pathogen infection. J Exp Bot 63: 983-999.
39. Petřivalský M, Brauner F, Luhová L, Gagneul D, Sebela M (2007) Aminoaldehyde dehydrogenase activity during wound healing of mechanically injured pea seedlings. J. Plant Physiol 164: 1410-1418. (Pubitemid 47576488)
40. Degenkolbe T, Do PT, Kopka J, Zuther E, Hincha DK, et al. (2013) Identification of drought tolerance markers in a diverse population of rice cultivars by expression and metabolite profiling. PLoS ONE 8:e63637.
41. Masle J, Gilmore SR, Farquhar GD (2005) The ERECTA gene regulates plant transpiration efficiency in Arabidopsis. Nature 436: 866-870. (Pubitemid 41160647)
42. Xing HT, Guo P, Xia XL, Yin WL (2011) PdERECTA, a leucine-rich repeat receptor-like kinase of poplar, confers enhanced water use efficiency in Arabidopsis . Planta 234: 229-241.
43. Li D, Zhang Y, Hu X, Shen X, Ma L, Su Z, Wang T, Dong J (2011) Transcriptional profiling of Medicago truncatula under salt stress identified a novel CBF transcription factor MtCBF4 that plays an important role in abiotic stress responses. BMC Plant Biol 11: 109.
44. Cuc LM, Mace E, Crouch J, Quang VD, Long TD, et al. (2008) Isolation and characterization of novel microsatellite markers and their application for diversity assessment in cultivated groundnut (Arachis hypogaea) . BMC Plant Biol 8: 55.
45. Yang SY, Saxena RK, Kulwal PL, Ash GJ, Dubey A, et al. (2011) The first genetic map of pigeonpea based on diversity arrays technology (DArT) markers. J Genet 90: 103-109.
46. Yang S, Pang W, Ash G, Harper J, Carling J, et al. (2006) Low level of genetic diversity in cultivated pigeonpea compared to its wild relatives is revealed by diversity arrays technology (DArT). Theor Appl Genet 113: 585-595. (Pubitemid 44127002)
47. Kashiwagi J, Krishnamurthy L, Crouch JH, Serraj R (2006) Variability of root length density and its contributions to seed yield in chickpea (Cicer arietinum L.) under terminal drought stress. Field Crops Res 95: 171-181. (Pubitemid 43048789)
48. SAS Institute Inc. (2008) SAS/STAT 9.2 User's Guide. Cary, NC: SAS Institute Inc.
49. Liu K, Muse SV (2005) PowerMarker: integrate analysis environment for genetic marker data. Bioinformatics 21: 2128-2129. (Pubitemid 40668066)
50. Perrier X, Flori A, Bonnot F (2003) Data analysis methods. In: Hamon P, Seguin M, Perrier X, Glaszmann JC eds. Genetic diversity of cultivated tropical plants. Enfield, Montpellier, France, pp 3-76.
51. Huson DH, Richter DC, Rausch C, Dezulian T, Franz M, et al. (2007) Dendroscope: An interactive viewer for large phylogenetic trees. BMC Bioinformatics 8: 460.
52. Zhang Z, Ersoz E, Lai C-Q, Todhunter RJ, Tiwari HK, et al. (2010) Mixed linear model approach adapted for genome-wide association studies. Nat Genet 42: 355-360.