-
1
-
-
79953839352
-
High-throughput SNP genotyping in the highly heterozygous genome of Eucalyptus: assay success, polymorphism and transferability across species
-
Grattapaglia D, Junior O, Kirst M, de Lima B, Faria D, et al. (2011) High-throughput SNP genotyping in the highly heterozygous genome of Eucalyptus: assay success, polymorphism and transferability across species. BMC Plant Biology 11: 65.
-
(2011)
BMC Plant Biology
, vol.11
, pp. 65
-
-
Grattapaglia, D.1
Junior, O.2
Kirst, M.3
de Lima, B.4
Faria, D.5
-
2
-
-
79958071911
-
Single nucleotide polymorphism discovery in elite north american potato germplasm
-
Hamilton JP, Hansey CN, Whitty BR, Stoffel K, Massa AN, et al. (2011) Single nucleotide polymorphism discovery in elite north american potato germplasm. BMC genomics 12.
-
(2011)
BMC genomics
, vol.12
-
-
Hamilton, J.P.1
Hansey, C.N.2
Whitty, B.R.3
Stoffel, K.4
Massa, A.N.5
-
3
-
-
77953233453
-
Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines
-
Atwell S, Huang YS, Vilhjalmsson BJ, Willems G, Horton M, et al. (2010) Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature 465: 627-631.
-
(2010)
Nature
, vol.465
, pp. 627-631
-
-
Atwell, S.1
Huang, Y.S.2
Vilhjalmsson, B.J.3
Willems, G.4
Horton, M.5
-
4
-
-
73449108400
-
Development and implementation of high-throughput SNP genotyping in barley
-
Close T, Bhat P, Lonardi S, Wu Y, Rostoks N, et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC genomics 10: 582.
-
(2009)
BMC Genomics
, vol.10
, pp. 582
-
-
Close, T.1
Bhat, P.2
Lonardi, S.3
Wu, Y.4
Rostoks, N.5
-
5
-
-
78049332150
-
-
Huang X, Wei X, Sang T, Zhao Q, Feng Q, et al. (2010) Genome-wide association studies of 14 agronomic traits in rice landraces. 42: 961-967.
-
(2010)
Genome-wide association studies of 14 agronomic traits in rice landraces
, vol.42
, pp. 961-967
-
-
Huang, X.1
Wei, X.2
Sang, T.3
Zhao, Q.4
Feng, Q.5
-
7
-
-
51549104956
-
Molecular Plant Breeding as the Foundation for 21st Century Crop Improvement
-
Moose SP, Mumm RH, (2008) Molecular Plant Breeding as the Foundation for 21st Century Crop Improvement. Plant physiology 147: 969-977.
-
(2008)
Plant Physiology
, vol.147
, pp. 969-977
-
-
Moose, S.P.1
Mumm, R.H.2
-
9
-
-
33750434321
-
Single nucleotide polymorphism (SNP) genotyping as basis for developing a PCR-based marker highly diagnostic for potato varieties with high resistance to Globodera pallida pathotype Pa2/3
-
Sattarzadeh A, Achenbach U, Lübeck J, Strahwald J, Tacke E, et al. (2006) Single nucleotide polymorphism (SNP) genotyping as basis for developing a PCR-based marker highly diagnostic for potato varieties with high resistance to Globodera pallida pathotype Pa2/3. Molecular Breeding 18: 301-312.
-
(2006)
Molecular Breeding
, vol.18
, pp. 301-312
-
-
Sattarzadeh, A.1
Achenbach, U.2
Lübeck, J.3
Strahwald, J.4
Tacke, E.5
-
10
-
-
53249132629
-
Identification of genetic variants using bar-coded multiplexed sequencing
-
Craig DW, Pearson JV, Szelinger S, Sekar A, Redman M, et al. (2008) Identification of genetic variants using bar-coded multiplexed sequencing. Nature Methods 5: 887-893.
-
(2008)
Nature Methods
, vol.5
, pp. 887-893
-
-
Craig, D.W.1
Pearson, J.V.2
Szelinger, S.3
Sekar, A.4
Redman, M.5
-
11
-
-
28844463698
-
Emerging technologies in DNA sequencing
-
Metzker ML, (2005) Emerging technologies in DNA sequencing. Genome Research 15: 1767-1776.
-
(2005)
Genome Research
, vol.15
, pp. 1767-1776
-
-
Metzker, M.L.1
-
12
-
-
77952429403
-
Large-Scale Discovery of Gene-Enriched SNPs
-
Gore MA, Wright MH, Ersoz ES, Bouffard P, Szekeres ES, et al. (2009) Large-Scale Discovery of Gene-Enriched SNPs. Plant Gen 2: 121-133.
-
(2009)
Plant Gen
, vol.2
, pp. 121-133
-
-
Gore, M.A.1
Wright, M.H.2
Ersoz, E.S.3
Bouffard, P.4
Szekeres, E.S.5
-
13
-
-
79953122203
-
A next-generation sequencing method for overcoming the multiple gene copy problem in polyploid phylogenetics, applied to Poa grasses
-
Griffin P, Robin C, Hoffmann A, (2011) A next-generation sequencing method for overcoming the multiple gene copy problem in polyploid phylogenetics, applied to Poa grasses. BMC Biology 9: 19.
-
(2011)
BMC Biology
, vol.9
, pp. 19
-
-
Griffin, P.1
Robin, C.2
Hoffmann, A.3
-
14
-
-
77952534535
-
Rapid Genomic Characterization of the Genus Vitis
-
Myles S, Chia J-M, Hurwitz B, Simon C, Zhong GY, et al. (2010) Rapid Genomic Characterization of the Genus Vitis. PloS one 5: e8219.
-
(2010)
PloS One
, vol.5
-
-
Myles, S.1
Chia, J.-M.2
Hurwitz, B.3
Simon, C.4
Zhong, G.Y.5
-
15
-
-
78049416608
-
The Characterization of Twenty Sequenced Human Genomes
-
Pelak K, Shianna KV, Ge D, Maia JM, Zhu M, et al. (2010) The Characterization of Twenty Sequenced Human Genomes. PLoS genetics 6: e1001111.
-
(2010)
PLoS Genetics
, vol.6
-
-
Pelak, K.1
Shianna, K.V.2
Ge, D.3
Maia, J.M.4
Zhu, M.5
-
16
-
-
34547602290
-
Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
-
Gore M, Bradbury P, Hogers R, Kirst M, Verstege E, et al. (2007) Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes. Crop Sci 47: S-135-S-148.
-
(2007)
Crop Sci
, vol.47
, pp. 135-148
-
-
Gore, M.1
Bradbury, P.2
Hogers, R.3
Kirst, M.4
Verstege, E.5
-
17
-
-
79955783956
-
A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species
-
Elshire RJ, Glaubitz JC, Sun Q, Poland JA, Kawamoto K, et al. (2011) A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species. PloS one 6: e19379.
-
(2011)
PloS One
, vol.6
-
-
Elshire, R.J.1
Glaubitz, J.C.2
Sun, Q.3
Poland, J.A.4
Kawamoto, K.5
-
18
-
-
43149110423
-
Complexity Reduction of Polymorphic Sequences (CRoPS™): A Novel Approach for Large-Scale Polymorphism Discovery in Complex Genomes
-
van Orsouw NJ, Hogers RCJ, Janssen A, Yalcin F, Snoeijers S, et al. (2007) Complexity Reduction of Polymorphic Sequences (CRoPS™): A Novel Approach for Large-Scale Polymorphism Discovery in Complex Genomes. PloS one 2: e1172.
-
(2007)
PloS One
, vol.2
-
-
van Orsouw, N.J.1
Hogers, R.C.J.2
Janssen, A.3
Yalcin, F.4
Snoeijers, S.5
-
19
-
-
59849113821
-
Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing
-
Gnirke A, Melnikov A, Maguire J, Rogov P, LeProust EM, et al. (2009) Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing. Nature Biotechnology 27: 182-189.
-
(2009)
Nature Biotechnology
, vol.27
, pp. 182-189
-
-
Gnirke, A.1
Melnikov, A.2
Maguire, J.3
Rogov, P.4
LeProust, E.M.5
-
20
-
-
57449093576
-
High-throughput quantitative polymerase chain reaction in picoliter droplets
-
Kiss MM, Ortoleva-Donnelly L, Reginald Beer N, Warner J, Bailey CG, et al. (2008) High-throughput quantitative polymerase chain reaction in picoliter droplets. Analytical Chemistry 80: 8975-8981.
-
(2008)
Analytical Chemistry
, vol.80
, pp. 8975-8981
-
-
Kiss, M.M.1
Ortoleva-Donnelly, L.2
Reginald Beer, N.3
Warner, J.4
Bailey, C.G.5
-
21
-
-
78049321160
-
-
Nijman IJ, Mokry M, van Boxtel R, Toonen P, de Bruijn E, et al. (2010) Mutation discovery by targeted genomic enrichment of multiplexed barcoded samples. 7: 913-915.
-
(2010)
Mutation discovery by targeted genomic enrichment of multiplexed barcoded samples
, vol.7
, pp. 913-915
-
-
Nijman, I.J.1
Mokry, M.2
van Boxtel, R.3
Toonen, P.4
de Bruijn, E.5
-
22
-
-
79959435199
-
-
Davey JW, Hohenlohe PA, Etter PD, Boone JQ, Catchen JM, et al. (2011) Genome-wide genetic marker discovery and genotyping using next-generation sequencing. 12: 499-510.
-
(2011)
Genome-wide genetic marker discovery and genotyping using next-generation sequencing
, vol.12
, pp. 499-510
-
-
Davey, J.W.1
Hohenlohe, P.A.2
Etter, P.D.3
Boone, J.Q.4
Catchen, J.M.5
-
23
-
-
77449121614
-
-
Mamanova L, Coffey AJ, Scott CE, Kozarewa I, Turner EH, et al. (2010) Target-enrichment strategies for next-generation sequencing. 7: 111-118.
-
(2010)
Target-enrichment strategies for next-generation sequencing
, vol.7
, pp. 111-118
-
-
Mamanova, L.1
Coffey, A.J.2
Scott, C.E.3
Kozarewa, I.4
Turner, E.H.5
-
24
-
-
66749159688
-
-
Hodges E, Rooks M, Xuan Z, Bhattacharjee A, Benjamin Gordon D, et al. (2009) Hybrid selection of discrete genomic intervals on custom-designed microarrays for massively parallel sequencing. 4: 960-974.
-
(2009)
Hybrid selection of discrete genomic intervals on custom-designed microarrays for massively parallel sequencing
, vol.4
, pp. 960-974
-
-
Hodges, E.1
Rooks, M.2
Xuan, Z.3
Bhattacharjee, A.4
Benjamin Gordon, D.5
-
25
-
-
79960422847
-
Genome sequence and analysis of the tuber crop potato
-
Xu X, Pan S, Cheng S, Zhang B, Mu D, et al. (2011) Genome sequence and analysis of the tuber crop potato. Nature 475: 189-195.
-
(2011)
Nature
, vol.475
, pp. 189-195
-
-
Xu, X.1
Pan, S.2
Cheng, S.3
Zhang, B.4
Mu, D.5
-
26
-
-
53749107455
-
A community-based annotation framework for linking solanaceae genomes with phenomes
-
Menda N, Buels RM, Tecle I, Mueller LA, (2008) A community-based annotation framework for linking solanaceae genomes with phenomes. Plant physiology 147: 1788-1799.
-
(2008)
Plant Physiology
, vol.147
, pp. 1788-1799
-
-
Menda, N.1
Buels, R.M.2
Tecle, I.3
Mueller, L.A.4
-
28
-
-
77952424242
-
A pipeline for high throughput detection and mapping of SNPs from EST databases
-
Anithakumari AM, Tang J, van Eck HJ, Visser RG, Leunissen JA, et al. (2010) A pipeline for high throughput detection and mapping of SNPs from EST databases. Molecular breeding: new strategies in plant improvement 26: 65-75.
-
(2010)
Molecular Breeding: New Strategies in Plant Improvement
, vol.26
, pp. 65-75
-
-
Anithakumari, A.M.1
Tang, J.2
van Eck, H.J.3
Visser, R.G.4
Leunissen, J.A.5
-
29
-
-
33750305245
-
QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyploid species
-
Tang J, Vosman B, Voorrips RE, van der Linden CG, Leunissen JA, (2006) QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyploid species. BMC bioinformatics 7: 438.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 438
-
-
Tang, J.1
Vosman, B.2
Voorrips, R.E.3
van der Linden, C.G.4
Leunissen, J.A.5
-
30
-
-
33751344142
-
Combining bioinformatics and phylogenetics to identify large sets of single-copy orthologous genes (COSII) for comparative, evolutionary and systematic studies: a test case in the euasterid plant clade
-
Wu F, Mueller LA, Crouzillat D, Petiard V, Tanksley SD, (2006) Combining bioinformatics and phylogenetics to identify large sets of single-copy orthologous genes (COSII) for comparative, evolutionary and systematic studies: a test case in the euasterid plant clade. Genetics 174: 1407-1420.
-
(2006)
Genetics
, vol.174
, pp. 1407-1420
-
-
Wu, F.1
Mueller, L.A.2
Crouzillat, D.3
Petiard, V.4
Tanksley, S.D.5
-
31
-
-
0035096955
-
A potato molecular-function map for carbohydrate metabolism and transport
-
Gebhardt C, Chen X, Salamini F, (2001) A potato molecular-function map for carbohydrate metabolism and transport. Theoretical and Applied Genetics 102: 284-295.
-
(2001)
Theoretical and Applied Genetics
, vol.102
, pp. 284-295
-
-
Gebhardt, C.1
Chen, X.2
Salamini, F.3
-
32
-
-
2542522335
-
Engineering plants with increased levels of the antioxidant chlorogenic acid
-
Martin C, Niggeweg R, Michael AJ, (2004) Engineering plants with increased levels of the antioxidant chlorogenic acid. Nature Biotechnology 22: 746-754.
-
(2004)
Nature Biotechnology
, vol.22
, pp. 746-754
-
-
Martin, C.1
Niggeweg, R.2
Michael, A.J.3
-
33
-
-
70449366132
-
Manipulation and compensation of steroidal glycoalkaloid biosynthesis in potatoes
-
Solanaceae VI: Genomics Meets Biodiversity
-
Mccue KF, Allen PV, Shepherd LVT, Blake A, Rockhold DR, et al. (2007) Manipulation and compensation of steroidal glycoalkaloid biosynthesis in potatoes. Proceedings of the VIth International Solanaceae Conference, Solanaceae VI: Genomics Meets Biodiversity: 343-349.
-
(2007)
Proceedings of the VIth International Solanaceae Conference
, pp. 343-349
-
-
Mccue, K.F.1
Allen, P.V.2
Shepherd, L.V.T.3
Blake, A.4
Rockhold, D.R.5
-
34
-
-
77954424682
-
Identification of alleles of carotenoid pathway genes important for zeaxanthin accumulation in potato tubers
-
Wolters AMA, Uitdewilligen JGAML, Kloosterman BA, Hutten RCB, Visser RGF, et al. (2010) Identification of alleles of carotenoid pathway genes important for zeaxanthin accumulation in potato tubers. Plant Molecular Biology 73: 659-671.
-
(2010)
Plant Molecular Biology
, vol.73
, pp. 659-671
-
-
Wolters, A.M.A.1
Uitdewilligen, J.G.A.M.L.2
Kloosterman, B.A.3
Hutten, R.C.B.4
Visser, R.G.F.5
-
35
-
-
0034129194
-
Optimal spliced alignment of homologous cDNA to a genomic DNA template
-
Usuka J, Zhu W, Brendel V, (2000) Optimal spliced alignment of homologous cDNA to a genomic DNA template. Bioinformatics 16: 203-211.
-
(2000)
Bioinformatics
, vol.16
, pp. 203-211
-
-
Usuka, J.1
Zhu, W.2
Brendel, V.3
-
36
-
-
32044460122
-
Design optimization methods for genomic DNA tiling arrays
-
Bertone P, Trifonov V, Rozowsky JS, Schubert F, Emanuelsson O, et al. (2006) Design optimization methods for genomic DNA tiling arrays. Genome Research 16: 271-281.
-
(2006)
Genome Research
, vol.16
, pp. 271-281
-
-
Bertone, P.1
Trifonov, V.2
Rozowsky, J.S.3
Schubert, F.4
Emanuelsson, O.5
-
37
-
-
42149113457
-
Association mapping of quality traits in potato (Solanum tuberosum L.)
-
D'hoop BB, Paulo MJ, Mank RA, van Eck HJ, van Eeuwijk FA, (2008) Association mapping of quality traits in potato (Solanum tuberosum L.). Euphytica 161: 47-60.
-
(2008)
Euphytica
, vol.161
, pp. 47-60
-
-
D'hoop, B.B.1
Paulo, M.J.2
Mank, R.A.3
van Eck, H.J.4
van Eeuwijk, F.A.5
-
38
-
-
34547768383
-
Production and evaluation of somatic hybrids derived from monoploid potato
-
Veilleux RE, Lightbourn GJ, (2007) Production and evaluation of somatic hybrids derived from monoploid potato. American Journal of Potato Research 84: 425-435.
-
(2007)
American Journal of Potato Research
, vol.84
, pp. 425-435
-
-
Veilleux, R.E.1
Lightbourn, G.J.2
-
39
-
-
56149096455
-
Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology
-
Cronn R, Liston A, Parks M, Gernandt DS, Shen R, et al. (2008) Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology. Nucleic Acids Research 36: e122.
-
(2008)
Nucleic Acids Research
, vol.36
-
-
Cronn, R.1
Liston, A.2
Parks, M.3
Gernandt, D.S.4
Shen, R.5
-
40
-
-
75349097525
-
Enrichment of sequencing targets from the human genome by solution hybridization
-
Harismendy O, Tewhey R, Nakano M, Wang XY, Pabon-Pena C, et al. (2009) Enrichment of sequencing targets from the human genome by solution hybridization. Genome Biology 10.
-
(2009)
Genome Biology
, vol.10
-
-
Harismendy, O.1
Tewhey, R.2
Nakano, M.3
Wang, X.Y.4
Pabon-Pena, C.5
-
41
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Durbin R, Li H, (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Durbin, R.1
Li, H.2
-
42
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Durbin R, Li H, Handsaker B, Wysoker A, Fennell T, et al. (2009) The Sequence Alignment/Map format and SAMtools. Bioinformatics 25: 2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Durbin, R.1
Li, H.2
Handsaker, B.3
Wysoker, A.4
Fennell, T.5
-
43
-
-
77956295988
-
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
-
McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, et al. (2010) The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data. Genome Research 20: 1297-1303.
-
(2010)
Genome Research
, vol.20
, pp. 1297-1303
-
-
McKenna, A.1
Hanna, M.2
Banks, E.3
Sivachenko, A.4
Cibulskis, K.5
-
44
-
-
77951770756
-
BEDTools: a flexible suite of utilities for comparing genomic features
-
Quinlan AR, Hall IM, (2010) BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26: 841-842.
-
(2010)
Bioinformatics
, vol.26
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
46
-
-
84892551553
-
-
SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3. Fly 6
-
Cingolani P, Platts A, Wang L, Coon M, Nguyen T, et al. (2012) A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3. Fly 6.
-
(2012)
A program for annotating and predicting the effects of single nucleotide polymorphisms
-
-
Cingolani, P.1
Platts, A.2
Wang, L.3
Coon, M.4
Nguyen, T.5
-
48
-
-
78649629456
-
Population structure and linkage disequilibrium unravelled in tetraploid potato
-
D'hoop BB, Paulo MJ, Kowitwanich K, Sengers M, Visser RGF, et al. (2010) Population structure and linkage disequilibrium unravelled in tetraploid potato. Theoretical and Applied Genetics 121: 1151-1170.
-
(2010)
Theoretical and Applied Genetics
, vol.121
, pp. 1151-1170
-
-
D'hoop, B.B.1
Paulo, M.J.2
Kowitwanich, K.3
Sengers, M.4
Visser, R.G.F.5
-
49
-
-
34548292504
-
PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses
-
Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MAR, et al. (2007) PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses. The American Journal of Human Genetics 81: 559-575.
-
(2007)
The American Journal of Human Genetics
, vol.81
, pp. 559-575
-
-
Purcell, S.1
Neale, B.2
Todd-Brown, K.3
Thomas, L.4
Ferreira, M.A.R.5
-
50
-
-
79956025063
-
Genotype calling in tetraploid species from bi-allelic marker data using mixture models
-
Voorrips RE, Gort G, Vosman B (2011) Genotype calling in tetraploid species from bi-allelic marker data using mixture models. BMC bioinformatics 12.
-
(2011)
BMC bioinformatics
, vol.12
-
-
Voorrips, R.E.1
Gort, G.2
Vosman, B.3
-
51
-
-
70249111091
-
-
Ng SB, Turner EH, Robertson PD, Flygare SD, Bigham AW, et al. (2009) Targeted capture and massively parallel sequencing of 12 human exomes. 461: 272-276.
-
(2009)
Targeted capture and massively parallel sequencing of 12 human exomes
, vol.461
, pp. 272-276
-
-
Ng, S.B.1
Turner, E.H.2
Robertson, P.D.3
Flygare, S.D.4
Bigham, A.W.5
-
52
-
-
33845878118
-
Chloroplast genetic engineering for improved agronomic traits and molecular farming, using various selection systems
-
Daniell H, (2004) Chloroplast genetic engineering for improved agronomic traits and molecular farming, using various selection systems. In Vitro Cellular & Developmental Biology-Animal 40: 18a-18a.
-
(2004)
In Vitro Cellular & Developmental Biology-Animal
, vol.40
-
-
Daniell, H.1
-
53
-
-
74049093136
-
-
Lam HYK, Mu XJ, Stutz AM, Tanzer A, Cayting PD, et al. (2010) Nucleotide-resolution analysis of structural variants using BreakSeq and a breakpoint library. 28: 47-55.
-
(2010)
Nucleotide-resolution analysis of structural variants using BreakSeq and a breakpoint library
, vol.28
, pp. 47-55
-
-
Lam, H.Y.K.1
Mu, X.J.2
Stutz, A.M.3
Tanzer, A.4
Cayting, P.D.5
-
54
-
-
84864609288
-
Copy number variation detection and genotyping from exome sequence data
-
Krumm N, Sudmant PH, Ko A, O'Roak BJ, Malig M, et al. (2012) Copy number variation detection and genotyping from exome sequence data. Genome Research.
-
(2012)
Genome Research
-
-
Krumm, N.1
Sudmant, P.H.2
Ko, A.3
O'Roak, B.J.4
Malig, M.5
-
55
-
-
3142753515
-
First-generation SNP/InDel markers tagging loci for pathogen resistance in the potato genome
-
Rickert AM, Kim JH, Meyer S, Nagel A, Ballvora A, et al. (2003) First-generation SNP/InDel markers tagging loci for pathogen resistance in the potato genome. Plant Biotechnology Journal 1: 399-410.
-
(2003)
Plant Biotechnology Journal
, vol.1
, pp. 399-410
-
-
Rickert, A.M.1
Kim, J.H.2
Meyer, S.3
Nagel, A.4
Ballvora, A.5
-
56
-
-
33747850182
-
Assessment of linkage disequilibrium in potato genome with single nucleotide polymorphism markers
-
Simko I, Haynes KG, Jones RW, (2006) Assessment of linkage disequilibrium in potato genome with single nucleotide polymorphism markers. Genetics 173: 2237-2245.
-
(2006)
Genetics
, vol.173
, pp. 2237-2245
-
-
Simko, I.1
Haynes, K.G.2
Jones, R.W.3
-
57
-
-
18944364160
-
Construction of a sugar beet BAC library from a hybrid with diverse traits
-
McGrath J, Shaw R, de los Reyes B, Weiland J, (2004) Construction of a sugar beet BAC library from a hybrid with diverse traits. Plant Molecular Biology Reporter 22: 23-28.
-
(2004)
Plant Molecular Biology Reporter
, vol.22
, pp. 23-28
-
-
McGrath, J.1
Shaw, R.2
de los Reyes, B.3
Weiland, J.4
-
58
-
-
0038744804
-
SNP frequency, haplotype structure and linkage disequilibrium in elite maize inbred lines
-
Ching A, Caldwell KS, Jung M, Dolan M, Smith OS, et al. (2002) SNP frequency, haplotype structure and linkage disequilibrium in elite maize inbred lines. Bmc Genetics 3.
-
(2002)
Bmc Genetics
, vol.3
-
-
Ching, A.1
Caldwell, K.S.2
Jung, M.3
Dolan, M.4
Smith, O.S.5
-
59
-
-
0037355118
-
Single-Nucleotide Polymorphisms in Soybean
-
Zhu YL, Song QJ, Hyten DL, Van Tassell CP, Matukumalli LK, et al. (2003) Single-Nucleotide Polymorphisms in Soybean. Genetics 163: 1123-1134.
-
(2003)
Genetics
, vol.163
, pp. 1123-1134
-
-
Zhu, Y.L.1
Song, Q.J.2
Hyten, D.L.3
Van Tassell, C.P.4
Matukumalli, L.K.5
-
60
-
-
0036013413
-
Single nucleotide polymorphisms derived from ancestral populations show no evidence for biased diversity estimates in Drosophila melanogaster
-
Schlötterer C, Harr B, (2002) Single nucleotide polymorphisms derived from ancestral populations show no evidence for biased diversity estimates in Drosophila melanogaster. Molecular ecology 11: 947-950.
-
(2002)
Molecular Ecology
, vol.11
, pp. 947-950
-
-
Schlötterer, C.1
Harr, B.2
-
61
-
-
0034944165
-
Deconstructing maize population structure
-
Pritchard JK, (2001) Deconstructing maize population structure. Nature Genetics 28: 203-204.
-
(2001)
Nature Genetics
, vol.28
, pp. 203-204
-
-
Pritchard, J.K.1
-
62
-
-
38549148784
-
High throughput SNP discovery and genotyping in grapevine (Vitis vinifera L.) by combining a re-sequencing approach and SNPlex technology
-
Lijavetzky D, Cabezas J, Ibanez A, Rodriguez V, Martinez-Zapater J, (2007) High throughput SNP discovery and genotyping in grapevine (Vitis vinifera L.) by combining a re-sequencing approach and SNPlex technology. BMC genomics 8: 424.
-
(2007)
BMC Genomics
, vol.8
, pp. 424
-
-
Lijavetzky, D.1
Cabezas, J.2
Ibanez, A.3
Rodriguez, V.4
Martinez-Zapater, J.5
-
63
-
-
79961208740
-
-
Bakker E, Borm T, Prins P, Vossen E, Uenk G, et al. (2011) A genome-wide genetic map of NB-LRR disease resistance loci in potato. 123: 493-508.
-
(2011)
A genome-wide genetic map of NB-LRR disease resistance loci in potato
, vol.123
, pp. 493-508
-
-
Bakker, E.1
Borm, T.2
Prins, P.3
Vossen, E.4
Uenk, G.5
-
64
-
-
84857029273
-
Identification and localisation of the NB-LRR gene family within the potato genome
-
Jupe F, Pritchard L, Etherington G, MacKenzie K, Cock P, et al. (2012) Identification and localisation of the NB-LRR gene family within the potato genome. BMC genomics 13: 75.
-
(2012)
BMC Genomics
, vol.13
, pp. 75
-
-
Jupe, F.1
Pritchard, L.2
Etherington, G.3
MacKenzie, K.4
Cock, P.5
-
65
-
-
18144418212
-
-
Li X-Q, De Jong H, De Jong D, De Jong W, (2005) Inheritance and genetic mapping of tuber eye depth in cultivated diploid potatoes. 110: 1068-1073.
-
(2005)
Inheritance and genetic mapping of tuber eye depth in cultivated diploid potatoes
, vol.110
, pp. 1068-1073
-
-
Li, X.-Q.1
De Jong, H.2
De Jong, D.3
De Jong, W.4
-
66
-
-
0028297992
-
Multiple Alleles for Tuber Shape in Diploid Potato Detected by Qualitative and Quantitative Genetic Analysis Using RFLPs
-
Van Eck HJ, Jacobs J, Stam P, Ton J, Stiekema WJ, et al. (1994) Multiple Alleles for Tuber Shape in Diploid Potato Detected by Qualitative and Quantitative Genetic Analysis Using RFLPs. Genetics 137: 303-309.
-
(1994)
Genetics
, vol.137
, pp. 303-309
-
-
Van Eck, H.J.1
Jacobs, J.2
Stam, P.3
Ton, J.4
Stiekema, W.J.5
-
67
-
-
0029185751
-
The inheritance and chromosomal localization of AFLP markers in a non-inbred potato offspring
-
Van Eck HJ, Van Der VoortJR, Draaistra J, Van Zandvoort P, Van Enckevort E, et al. (1995) The inheritance and chromosomal localization of AFLP markers in a non-inbred potato offspring. Molecular Breeding 1: 397-410.
-
(1995)
Molecular Breeding
, vol.1
, pp. 397-410
-
-
Van Eck, H.J.1
Van Der Voort, J.R.2
Draaistra, J.3
Van Zandvoort, P.4
Van Enckevort, E.5
-
68
-
-
84861329310
-
Potato CONSTANS is involved in photoperiodic tuberization in a graft-transmissible manner
-
González-Schain ND, Díaz-Mendoza M, Żurczak M, Suárez-López P, (2012) Potato CONSTANS is involved in photoperiodic tuberization in a graft-transmissible manner. The Plant Journal 70: 678-690.
-
(2012)
The Plant Journal
, vol.70
, pp. 678-690
-
-
González-Schain, N.D.1
Díaz-Mendoza, M.2
Zurczak, M.3
Suárez-López, P.4
-
69
-
-
0033594140
-
An extreme cytoplasmic bottleneck in the modern European cultivated potato (Solanum tuberosum) is not reflected in decreased levels of nuclear diversity
-
Provan J, Powell W, Dewar H, Bryan G, Machray GC, et al. (1999) An extreme cytoplasmic bottleneck in the modern European cultivated potato (Solanum tuberosum) is not reflected in decreased levels of nuclear diversity. Proceedings of the Royal Society of London Series B: Biological Sciences 266: 633-639.
-
(1999)
Proceedings of the Royal Society of London Series B: Biological Sciences
, vol.266
, pp. 633-639
-
-
Provan, J.1
Powell, W.2
Dewar, H.3
Bryan, G.4
Machray, G.C.5
-
70
-
-
0000215224
-
Cultivated potato chloroplast DNA differs from the wild type by one deletion - evidence and implications
-
Hosaka K, de Zoeten GA, Hanneman Jr RE, (1988) Cultivated potato chloroplast DNA differs from the wild type by one deletion- evidence and implications. Theoretical and Applied Genetics 75: 741-745.
-
(1988)
Theoretical and Applied Genetics
, vol.75
, pp. 741-745
-
-
Hosaka, K.1
de Zoeten, G.A.2
Hanneman Jr., R.E.3
-
71
-
-
2142724702
-
Evolutionary pathway of T-type Chloroplast DNA in potato
-
Hosaka K, (2004) Evolutionary pathway of T-type Chloroplast DNA in potato. American Journal of Potato Research 81: 153-158.
-
(2004)
American Journal of Potato Research
, vol.81
, pp. 153-158
-
-
Hosaka, K.1
-
72
-
-
18144378816
-
Nuclear and chloroplast DNA reassessment of the origin of Indian potato varieties and its implications for the origin of the early European potato
-
Spooner DM, Nuñez J, Rodríguez F, Naik PS, Ghislain M, (2005) Nuclear and chloroplast DNA reassessment of the origin of Indian potato varieties and its implications for the origin of the early European potato. Theoretical and Applied Genetics 110: 1020-1026.
-
(2005)
Theoretical and Applied Genetics
, vol.110
, pp. 1020-1026
-
-
Spooner, D.M.1
Nuñez, J.2
Rodríguez, F.3
Naik, P.S.4
Ghislain, M.5
-
73
-
-
37649021324
-
An online potato pedigree database resource
-
Van Berloo R, Hutten RCB, Van Eck HJ, Visser RGF, (2007) An online potato pedigree database resource. Potato Research 50: 45-57.
-
(2007)
Potato Research
, vol.50
, pp. 45-57
-
-
Van Berloo, R.1
Hutten, R.C.B.2
Van Eck, H.J.3
Visser, R.G.F.4
-
74
-
-
84985616458
-
Chloroplast DNA variability in old and recently introduced potato cultivars
-
Powell W, Baird E, Duncan N, Waugh R, (1993) Chloroplast DNA variability in old and recently introduced potato cultivars. Annals of Applied Biology 123: 403-410.
-
(1993)
Annals of Applied Biology
, vol.123
, pp. 403-410
-
-
Powell, W.1
Baird, E.2
Duncan, N.3
Waugh, R.4
-
75
-
-
79951827407
-
Multiplex Target Enrichment Using DNA Indexing for Ultra-High Throughput SNP Detection
-
Kenny EM, Cormican P, Gilks WP, Gates AS, O'Dushlaine CT, et al. (2011) Multiplex Target Enrichment Using DNA Indexing for Ultra-High Throughput SNP Detection. DNA Research 18: 31-38.
-
(2011)
DNA Research
, vol.18
, pp. 31-38
-
-
Kenny, E.M.1
Cormican, P.2
Gilks, W.P.3
Gates, A.S.4
O'Dushlaine, C.T.5
-
76
-
-
75349097525
-
Enrichment of sequencing targets from the human genome by solution hybridization
-
Tewhey R, Nakano M, Wang X, Pabón-Peña C, Novak B, et al. (2009) Enrichment of sequencing targets from the human genome by solution hybridization. Genome Biology 10.
-
(2009)
Genome Biology
, vol.10
-
-
Tewhey, R.1
Nakano, M.2
Wang, X.3
Pabón-Peña, C.4
Novak, B.5
-
77
-
-
84874999632
-
Naturally occurring allele diversity allows potato cultivation in northern latitudes
-
Kloosterman B, Abelenda JA, Gomez MdMC, Oortwijn M, de Boer JM, et al. (2013) Naturally occurring allele diversity allows potato cultivation in northern latitudes. Nature 495: 246-250.
-
(2013)
Nature
, vol.495
, pp. 246-250
-
-
Kloosterman, B.1
Abelenda, J.A.2
Gomez, M.M.C.3
Oortwijn, M.4
de Boer, J.M.5
|