-
4
-
-
77953643054
-
Adding new chemistries to the genetic code
-
Liu CC, Schultz PG (2010) Adding new chemistries to the genetic code. Annu Rev Biochem 79:413-444.
-
(2010)
Annu Rev Biochem
, vol.79
, pp. 413-444
-
-
Liu, C.C.1
Schultz, P.G.2
-
5
-
-
0037166006
-
Pyrrolysine encoded by UAG in Archaea: Charging of a UAG-decoding specialized tRNA
-
Srinivasan G, James CM, Krzycki JA (2002) Pyrrolysine encoded by UAG in Archaea: Charging of a UAG-decoding specialized tRNA. Science 296(5572):1459-1462.
-
(2002)
Science
, vol.296
, Issue.5572
, pp. 1459-1462
-
-
Srinivasan, G.1
James, C.M.2
Krzycki, J.A.3
-
6
-
-
27844438536
-
The direct genetic encoding of pyrrolysine
-
Krzycki JA (2005) The direct genetic encoding of pyrrolysine. Curr Opin Microbiol 8(6):706-712.
-
(2005)
Curr Opin Microbiol
, vol.8
, Issue.6
, pp. 706-712
-
-
Krzycki, J.A.1
-
7
-
-
56649124785
-
Protein evolution with an expanded genetic code
-
Liu CC, et al. (2008) Protein evolution with an expanded genetic code. Proc Natl Acad Sci USA 105(46):17688-17693.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, Issue.46
, pp. 17688-17693
-
-
Liu, C.C.1
-
8
-
-
84898546801
-
Evolution of iron(II)-finger peptides by using a bipyridyl amino acid
-
Kang M, et al. (2014) Evolution of iron(II)-finger peptides by using a bipyridyl amino acid. ChemBioChem 15(6):822-825.
-
(2014)
ChemBioChem
, vol.15
, Issue.6
, pp. 822-825
-
-
Kang, M.1
-
9
-
-
79960610738
-
Evolution of cyclic peptide protease inhibitors
-
Young TS, et al. (2011) Evolution of cyclic peptide protease inhibitors. Proc Natl Acad Sci USA 108(27):11052-11056.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, Issue.27
, pp. 11052-11056
-
-
Young, T.S.1
-
10
-
-
84894088759
-
Bacteriophages use an expanded genetic code on evolutionary paths to higher fitness
-
Hammerling MJ, et al. (2014) Bacteriophages use an expanded genetic code on evolutionary paths to higher fitness. Nat Chem Biol 10(3):178-180.
-
(2014)
Nat Chem Biol
, vol.10
, Issue.3
, pp. 178-180
-
-
Hammerling, M.J.1
-
12
-
-
0026801518
-
Molecular structure of the acyl-enzyme intermediate in beta-lactam hydrolysis at 1.7 A resolution
-
Strynadka NC, et al. (1992) Molecular structure of the acyl-enzyme intermediate in beta-lactam hydrolysis at 1.7 A resolution. Nature 359(6397):700-705.
-
(1992)
Nature
, vol.359
, Issue.6397
, pp. 700-705
-
-
Strynadka, N.C.1
-
13
-
-
84874993348
-
A versatile platform for single- and multiple-unnatural amino acid mutagenesis in Escherichia coli
-
Chatterjee A, Sun SB, Furman JL, Xiao H, Schultz PG (2013) A versatile platform for single- and multiple-unnatural amino acid mutagenesis in Escherichia coli. Biochemistry 52(10):1828-1837.
-
(2013)
Biochemistry
, vol.52
, Issue.10
, pp. 1828-1837
-
-
Chatterjee, A.1
Sun, S.B.2
Furman, J.L.3
Xiao, H.4
Schultz, P.G.5
-
14
-
-
84900864608
-
Genetic incorporation of histidine derivatives using an engineered pyrrolysyl-tRNA synthetase
-
Xiao H, et al. (2014) Genetic incorporation of histidine derivatives using an engineered pyrrolysyl-tRNA synthetase. ACS Chem Biol 9(5):1092-1096.
-
(2014)
ACS Chem Biol
, vol.9
, Issue.5
, pp. 1092-1096
-
-
Xiao, H.1
-
15
-
-
0027275788
-
Crystal structure of Escherichia coli TEM1 beta-lactamase at 1.8 A resolution
-
Jelsch C, Mourey L, Masson JM, Samama JP (1993) Crystal structure of Escherichia coli TEM1 beta-lactamase at 1.8 A resolution. Proteins 16(4):364-383.
-
(1993)
Proteins
, vol.16
, Issue.4
, pp. 364-383
-
-
Jelsch, C.1
Mourey, L.2
Masson, J.M.3
Samama, J.P.4
-
16
-
-
0029152128
-
Effects of Asp-179 mutations in TEMpUC19 beta-lactamase on susceptibility to beta-lactams
-
Vakulenko SB, Tóth M, Taibi P, Mobashery S, Lerner SA (1995) Effects of Asp-179 mutations in TEMpUC19 beta-lactamase on susceptibility to beta-lactams. Antimicrob Agents Chemother 39(8):1878-1880.
-
(1995)
Antimicrob Agents Chemother
, vol.39
, Issue.8
, pp. 1878-1880
-
-
Vakulenko, S.B.1
Tóth, M.2
Taibi, P.3
Mobashery, S.4
Lerner, S.A.5
-
17
-
-
84866389246
-
Exploring the role of a conserved class A residue in the Ω-Loop of KPC-2 β-lactamase: A mechanism for ceftazidime hydrolysis
-
Levitt PS, et al. (2012) Exploring the role of a conserved class A residue in the Ω-Loop of KPC-2 β-lactamase: A mechanism for ceftazidime hydrolysis. J Biol Chem 287(38):31783-31793.
-
(2012)
J Biol Chem
, vol.287
, Issue.38
, pp. 31783-31793
-
-
Levitt, P.S.1
-
18
-
-
70450233441
-
Structural and biochemical evidence that a TEM-1 beta-lactamase N170G active site mutant acts via substrate-assisted catalysis
-
Brown NG, Shanker S, Prasad BV, Palzkill T (2009) Structural and biochemical evidence that a TEM-1 beta-lactamase N170G active site mutant acts via substrate-assisted catalysis. J Biol Chem 284(48):33703-33712.
-
(2009)
J Biol Chem
, vol.284
, Issue.48
, pp. 33703-33712
-
-
Brown, N.G.1
Shanker, S.2
Prasad, B.V.3
Palzkill, T.4
-
19
-
-
33748063296
-
A novel ceftazidime-hydrolysing extended-spectrum beta-lactamase, CTX-M-54, with a single amino acid substitution at position 167 in the omega loop
-
Bae IK, et al. (2006) A novel ceftazidime-hydrolysing extended-spectrum beta-lactamase, CTX-M-54, with a single amino acid substitution at position 167 in the omega loop. J Antimicrob Chemother 58(2):315-319.
-
(2006)
J Antimicrob Chemother
, vol.58
, Issue.2
, pp. 315-319
-
-
Bae, I.K.1
-
20
-
-
0034804715
-
Crystal structure and kinetic analysis of beta-lactamase inhibitor protein-II in complex with TEM-1 beta-lactamase
-
Lim D, et al. (2001) Crystal structure and kinetic analysis of beta-lactamase inhibitor protein-II in complex with TEM-1 beta-lactamase. Nat Struct Biol 8(10):848-852.
-
(2001)
Nat Struct Biol
, vol.8
, Issue.10
, pp. 848-852
-
-
Lim, D.1
-
21
-
-
0029949210
-
A potent new mode of beta-lactamase inhibition revealed by the 1.7 A X-ray crystallographic structure of the TEM-1-BLIP complex
-
Strynadka NC, Jensen SE, Alzari PM, James MN (1996) A potent new mode of beta-lactamase inhibition revealed by the 1.7 A X-ray crystallographic structure of the TEM-1-BLIP complex. Nat Struct Biol 3(3):290-297.
-
(1996)
Nat Struct Biol
, vol.3
, Issue.3
, pp. 290-297
-
-
Strynadka, N.C.1
Jensen, S.E.2
Alzari, P.M.3
James, M.N.4
-
22
-
-
8544219754
-
Site-saturation mutagenesis of Tyr-105 reveals its importance in substrate stabilization and discrimination in TEM-1 beta-lactamase
-
Doucet N, De Wals PY, Pelletier JN (2004) Site-saturation mutagenesis of Tyr-105 reveals its importance in substrate stabilization and discrimination in TEM-1 beta-lactamase. J Biol Chem 279(44):46295-46303.
-
(2004)
J Biol Chem
, vol.279
, Issue.44
, pp. 46295-46303
-
-
Doucet, N.1
De Wals, P.Y.2
Pelletier, J.N.3
-
23
-
-
0029760859
-
Structure-based design of a potent transition state analogue for TEM-1 beta-lactamase
-
Strynadka NC, Martin R, Jensen SE, Gold M, Jones JB (1996) Structure-based design of a potent transition state analogue for TEM-1 beta-lactamase. Nat Struct Biol 3(8):688-695.
-
(1996)
Nat Struct Biol
, vol.3
, Issue.8
, pp. 688-695
-
-
Strynadka, N.C.1
Martin, R.2
Jensen, S.E.3
Gold, M.4
Jones, J.B.5
-
25
-
-
70350340728
-
The role of dynamic conformational ensembles in biomolecular recognition
-
Boehr DD, Nussinov R, Wright PE (2009) The role of dynamic conformational ensembles in biomolecular recognition. Nat Chem Biol 5(11):789-796.
-
(2009)
Nat Chem Biol
, vol.5
, Issue.11
, pp. 789-796
-
-
Boehr, D.D.1
Nussinov, R.2
Wright, P.E.3
-
27
-
-
84891453216
-
Protein conformational disorder and enzyme catalysis
-
Schulenburg C, Hilvert D (2013) Protein conformational disorder and enzyme catalysis. Top Curr Chem 337:41-67.
-
(2013)
Top Curr Chem
, vol.337
, pp. 41-67
-
-
Schulenburg, C.1
Hilvert, D.2
-
28
-
-
0030930805
-
The interplay between binding energy and catalysis in the evolution of a catalytic antibody
-
Ulrich HD, et al. (1997) The interplay between binding energy and catalysis in the evolution of a catalytic antibody. Nature 389(6648):271-275.
-
(1997)
Nature
, vol.389
, Issue.6648
, pp. 271-275
-
-
Ulrich, H.D.1
-
29
-
-
0030821164
-
Structural insights into the evolution of an antibody combining site
-
Wedemayer GJ, Patten PA, Wang LH, Schultz PG, Stevens RC (1997) Structural insights into the evolution of an antibody combining site. Science 276(5319):1665-1669.
-
(1997)
Science
, vol.276
, Issue.5319
, pp. 1665-1669
-
-
Wedemayer, G.J.1
Patten, P.A.2
Wang, L.H.3
Schultz, P.G.4
Stevens, R.C.5
-
30
-
-
0032549776
-
Immunological origins of binding and catalysis in a Diels-Alderase antibody
-
Romesberg FE, Spiller B, Schultz PG, Stevens RC (1998) Immunological origins of binding and catalysis in a Diels-Alderase antibody. Science 279(5358):1929-1933.
-
(1998)
Science
, vol.279
, Issue.5358
, pp. 1929-1933
-
-
Romesberg, F.E.1
Spiller, B.2
Schultz, P.G.3
Stevens, R.C.4
-
31
-
-
0026320866
-
The energy landscapes and motions of proteins
-
Frauenfelder H, Sligar SG, Wolynes PG (1991) The energy landscapes and motions of proteins. Science 254(5038):1598-1603.
-
(1991)
Science
, vol.254
, Issue.5038
, pp. 1598-1603
-
-
Frauenfelder, H.1
Sligar, S.G.2
Wolynes, P.G.3
-
32
-
-
0033056708
-
Folding funnels, binding funnels, and protein function
-
Tsai CJ, Kumar S, Ma B, Nussinov R (1999) Folding funnels, binding funnels, and protein function. Protein Sci 8(6):1181-1190.
-
(1999)
Protein Sci
, vol.8
, Issue.6
, pp. 1181-1190
-
-
Tsai, C.J.1
Kumar, S.2
Ma, B.3
Nussinov, R.4
-
33
-
-
0035845637
-
A comparative analysis of the immunological evolution of antibody 28B4
-
Yin J, et al. (2001) A comparative analysis of the immunological evolution of antibody 28B4. Biochemistry 40(36):10764-10773.
-
(2001)
Biochemistry
, vol.40
, Issue.36
, pp. 10764-10773
-
-
Yin, J.1
-
35
-
-
71449103005
-
Hidden alternative structures of proline isomerase essential for catalysis
-
Fraser JS, et al. (2009) Hidden alternative structures of proline isomerase essential for catalysis. Nature 462(7273):669-673.
-
(2009)
Nature
, vol.462
, Issue.7273
, pp. 669-673
-
-
Fraser, J.S.1
-
36
-
-
79953823548
-
A dynamic knockout reveals that conformational fluctuations influence the chemical step of enzyme catalysis
-
Bhabha G, et al. (2011) A dynamic knockout reveals that conformational fluctuations influence the chemical step of enzyme catalysis. Science 332(6026):234-238.
-
(2011)
Science
, vol.332
, Issue.6026
, pp. 234-238
-
-
Bhabha, G.1
-
37
-
-
84901195603
-
The role of distant mutations and allosteric regulation on LovD active site dynamics
-
Jiménez-Osés G, et al. (2014) The role of distant mutations and allosteric regulation on LovD active site dynamics. Nat Chem Biol 10(6):431-436.
-
(2014)
Nat Chem Biol
, vol.10
, Issue.6
, pp. 431-436
-
-
Jiménez-Osés, G.1
-
38
-
-
84876296670
-
How conformational changes can affect catalysis, inhibition and drug resistance of enzymes with induced-fit binding mechanism such as the HIV-1 protease
-
Weikl TR, Hemmateenejad B (2013) How conformational changes can affect catalysis, inhibition and drug resistance of enzymes with induced-fit binding mechanism such as the HIV-1 protease. Biochim Biophys Acta 1834(5):867-873.
-
(2013)
Biochim Biophys Acta
, vol.1834
, Issue.5
, pp. 867-873
-
-
Weikl, T.R.1
Hemmateenejad, B.2
-
39
-
-
0029090979
-
Mass spectral kinetic study of acylation and deacylation during the hydrolysis of penicillins and cefotaxime by beta-lactamase TEM-1 and the G238S mutant
-
Saves I, et al. (1995) Mass spectral kinetic study of acylation and deacylation during the hydrolysis of penicillins and cefotaxime by beta-lactamase TEM-1 and the G238S mutant. Biochemistry 34(37):11660-11667.
-
(1995)
Biochemistry
, vol.34
, Issue.37
, pp. 11660-11667
-
-
Saves, I.1
-
40
-
-
0021100270
-
Pre-steady state beta-lactamase kinetics. The trapping of a covalent intermediate and the interpretation of pH rate profiles
-
Anderson EG, Pratt RF (1983) Pre-steady state beta-lactamase kinetics. The trapping of a covalent intermediate and the interpretation of pH rate profiles. J Biol Chem 258(21):13120-13126.
-
(1983)
J Biol Chem
, vol.258
, Issue.21
, pp. 13120-13126
-
-
Anderson, E.G.1
Pratt, R.F.2
-
41
-
-
23444440823
-
Inactivation of antibiotics and the dissemination of resistance genes
-
Davies J (1994) Inactivation of antibiotics and the dissemination of resistance genes. Science 264(5157):375-382.
-
(1994)
Science
, vol.264
, Issue.5157
, pp. 375-382
-
-
Davies, J.1
-
42
-
-
0032581949
-
Structural basis for clinical longevity of carbapenem antibiotics in the face of challenge by the common class A beta-lactamases from the antibiotic-resistant bacteria
-
Maveyraud L, et al. (1998) Structural basis for clinical longevity of carbapenem antibiotics in the face of challenge by the common class A beta-lactamases from the antibiotic-resistant bacteria. J Am Chem Soc 120(38):9748-9752.
-
(1998)
J Am Chem Soc
, vol.120
, Issue.38
, pp. 9748-9752
-
-
Maveyraud, L.1
-
43
-
-
65249187275
-
A general method for scanning unnatural amino acid mutagenesis
-
Daggett KA, Layer M, Cropp TA (2009) A general method for scanning unnatural amino acid mutagenesis. ACS Chem Biol 4(2):109-113.
-
(2009)
ACS Chem Biol
, vol.4
, Issue.2
, pp. 109-113
-
-
Daggett, K.A.1
Layer, M.2
Cropp, T.A.3
-
44
-
-
68949161807
-
Programming cells by multiplex genome engineering and accelerated evolution
-
Wang HH, et al. (2009) Programming cells by multiplex genome engineering and accelerated evolution. Nature 460(7257):894-898.
-
(2009)
Nature
, vol.460
, Issue.7257
, pp. 894-898
-
-
Wang, H.H.1
-
45
-
-
84887959445
-
Multiplex iterative plasmid engineering for combinatorial optimization of metabolic pathways and diversification of protein coding sequences
-
Li Y, et al. (2013) Multiplex iterative plasmid engineering for combinatorial optimization of metabolic pathways and diversification of protein coding sequences. ACS Synth Biol 2(11):651-661.
-
(2013)
ACS Synth Biol
, vol.2
, Issue.11
, pp. 651-661
-
-
Li, Y.1
-
46
-
-
84900560301
-
A semi-synthetic organism with an expanded genetic alphabet
-
Malyshev DA, et al. (2014) A semi-synthetic organism with an expanded genetic alphabet. Nature 509(7500):385-388.
-
(2014)
Nature
, vol.509
, Issue.7500
, pp. 385-388
-
-
Malyshev, D.A.1
-
47
-
-
84902282234
-
A genetically encoded aza-Michael acceptor for covalent cross-linking of protein-receptor complexes
-
Furman JL, et al. (2014) A genetically encoded aza-Michael acceptor for covalent cross-linking of protein-receptor complexes. J Am Chem Soc 136(23):8411-8417.
-
(2014)
J Am Chem Soc
, vol.136
, Issue.23
, pp. 8411-8417
-
-
Furman, J.L.1
-
48
-
-
0030788941
-
A natural polymorphism in beta-lactamase is a global suppressor
-
Huang W, Palzkill T (1997) A natural polymorphism in beta-lactamase is a global suppressor. Proc Natl Acad Sci USA 94(16):8801-8806.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, Issue.16
, pp. 8801-8806
-
-
Huang, W.1
Palzkill, T.2
-
49
-
-
39449086721
-
Agar and broth dilution methods to determine the minimal inhibitory concentration (MIC) of antimicrobial substances
-
Wiegand I, Hilpert K, Hancock REW (2008) Agar and broth dilution methods to determine the minimal inhibitory concentration (MIC) of antimicrobial substances. Nat Protoc 3(2):163-175.
-
(2008)
Nat Protoc
, vol.3
, Issue.2
, pp. 163-175
-
-
Wiegand, I.1
Hilpert, K.2
Hancock, R.E.W.3
-
51
-
-
0027879008
-
Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants
-
Kabsch W (1993) Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants. J Appl Crystallogr 26:795-800.
-
(1993)
J Appl Crystallogr
, vol.26
, pp. 795-800
-
-
Kabsch, W.1
-
52
-
-
33644875355
-
Scaling and assessment of data quality
-
Evans P (2006) Scaling and assessment of data quality. Acta Crystallogr D Biol Crystallogr 62(Pt 1):72-82.
-
(2006)
Acta Crystallogr D Biol Crystallogr
, vol.62
, Issue.1
, pp. 72-82
-
-
Evans, P.1
-
53
-
-
79953737180
-
Overview of the CCP4 suite and current developments
-
Winn MD, et al. (2011) Overview of the CCP4 suite and current developments. Acta Crystallogr D Biol Crystallogr 67(Pt 4):235-242.
-
(2011)
Acta Crystallogr D Biol Crystallogr
, vol.67
, Issue.4
, pp. 235-242
-
-
Winn, M.D.1
-
54
-
-
34447508216
-
Phaser crystallographic software
-
McCoy AJ, et al. (2007) Phaser crystallographic software. J Appl Cryst 40(Pt 4):658-674.
-
(2007)
J Appl Cryst
, vol.40
, Issue.4
, pp. 658-674
-
-
McCoy, A.J.1
-
55
-
-
50249136103
-
Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7
-
Langer G, Cohen SX, Lamzin VS, Perrakis A (2008) Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7. Nat Protoc 3(7):1171-1179.
-
(2008)
Nat Protoc
, vol.3
, Issue.7
, pp. 1171-1179
-
-
Langer, G.1
Cohen, S.X.2
Lamzin, V.S.3
Perrakis, A.4
-
57
-
-
13244281317
-
Coot: Model-building tools for molecular graphics
-
Pt 1
-
Emsley P, Cowtan K (2004) Coot: Model-building tools for molecular graphics. Acta Crystallogr D Biol Crystallogr 60(Pt 12 Pt 1):2126-2132.
-
(2004)
Acta Crystallogr d Biol Crystallogr
, vol.60
, pp. 2126-2132
-
-
Emsley, P.1
Cowtan, K.2
|