메뉴 건너뛰기




Volumn 54, Issue 21, 2015, Pages 3370-3380

Structural basis for different substrate profiles of two closely related class D β-lactamases and their inhibition by halogens

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; ANTIBIOTICS; CARBOXYLATION; CRYSTAL STRUCTURE; CRYSTALLOGRAPHY; ENZYME INHIBITION; ENZYMES; HYDROLYSIS; SEWAGE TREATMENT PLANTS; X RAY CRYSTALLOGRAPHY;

EID: 84930613804     PISSN: 00062960     EISSN: 15204995     Source Type: Journal    
DOI: 10.1021/acs.biochem.5b00298     Document Type: Article
Times cited : (32)

References (67)
  • 1
    • 77955560486 scopus 로고    scopus 로고
    • Resistance to cephalosporins and carbapenems in Gram-negative bacterial pathogens
    • Pfeifer, Y., Cullik, A., and Witte, W. (2010) Resistance to cephalosporins and carbapenems in Gram-negative bacterial pathogens Int. J. Med. Microbiol. 300, 371-379
    • (2010) Int. J. Med. Microbiol. , vol.300 , pp. 371-379
    • Pfeifer, Y.1    Cullik, A.2    Witte, W.3
  • 2
    • 84881119572 scopus 로고    scopus 로고
    • Antibiotic resistance: The last resort
    • McKenna, M. (2013) Antibiotic resistance: The last resort Nature 499, 394-396
    • (2013) Nature , vol.499 , pp. 394-396
    • McKenna, M.1
  • 3
    • 84877279350 scopus 로고    scopus 로고
    • Platforms for antibiotic discovery
    • Lewis, K. (2013) Platforms for antibiotic discovery Nat. Rev. Drug Discovery 12, 371-387
    • (2013) Nat. Rev. Drug Discovery , vol.12 , pp. 371-387
    • Lewis, K.1
  • 4
    • 84860516573 scopus 로고    scopus 로고
    • Carbapenem resistance in Enterobacteriaceae: Here is the storm!
    • Nordmann, P., Dortet, L., and Poirel, L. (2012) Carbapenem resistance in Enterobacteriaceae: Here is the storm! Trends Mol. Med. 18, 263-272
    • (2012) Trends Mol. Med. , vol.18 , pp. 263-272
    • Nordmann, P.1    Dortet, L.2    Poirel, L.3
  • 5
    • 84874372114 scopus 로고    scopus 로고
    • The growing resistance of Klebsiella pneumoniae; The need to expand our antibiogram: Case report and review of the literature
    • Garbati, M. A. and Al Godhair, A. I. (2013) The growing resistance of Klebsiella pneumoniae; the need to expand our antibiogram: Case report and review of the literature African Journal of Infectious Disease 7, 8-10
    • (2013) African Journal of Infectious Disease , vol.7 , pp. 8-10
    • Garbati, M.A.1    Al Godhair, A.I.2
  • 6
    • 84899007380 scopus 로고    scopus 로고
    • Epidemiology and prevention of carbapenem-resistant Enterobacteriaceae in the United States
    • Guh, A. Y., Limbago, B. M., and Kallen, A. J. (2014) Epidemiology and prevention of carbapenem-resistant Enterobacteriaceae in the United States Expert Rev. Anti-Infect. Ther. 12, 565-580
    • (2014) Expert Rev. Anti-Infect. Ther. , vol.12 , pp. 565-580
    • Guh, A.Y.1    Limbago, B.M.2    Kallen, A.J.3
  • 8
    • 84877931035 scopus 로고    scopus 로고
    • β-Lactamase-mediated resistance: A biochemical, epidemiological and genetic overview
    • Gutkind, G. O., Di Conza, J., Power, P., and Radice, M. (2013) β-Lactamase-mediated resistance: A biochemical, epidemiological and genetic overview Curr. Pharm. Des. 19, 164-208
    • (2013) Curr. Pharm. Des. , vol.19 , pp. 164-208
    • Gutkind, G.O.1    Di Conza, J.2    Power, P.3    Radice, M.4
  • 9
    • 74249108028 scopus 로고    scopus 로고
    • Three decades of β-lactamase inhibitors
    • Drawz, S. M. and Bonomo, R. A. (2010) Three decades of β-lactamase inhibitors Clin. Microbiol. Rev. 23, 160-201
    • (2010) Clin. Microbiol. Rev. , vol.23 , pp. 160-201
    • Drawz, S.M.1    Bonomo, R.A.2
  • 10
    • 84856662229 scopus 로고    scopus 로고
    • Mechanisms of resistance and clinical relevance of resistance to β-lactams, glycopeptides, and fluoroquinolones
    • Rice, L. B. (2012) Mechanisms of resistance and clinical relevance of resistance to β-lactams, glycopeptides, and fluoroquinolones Mayo Clin. Proc. 87, 198-208
    • (2012) Mayo Clin. Proc. , vol.87 , pp. 198-208
    • Rice, L.B.1
  • 11
    • 0034035284 scopus 로고    scopus 로고
    • Molecular basis of antibiotic resistance and β-lactamase inhibition by mechanism-based inactivators: Perspectives and future directions
    • Therrien, C. and Levesque, R. C. (2000) Molecular basis of antibiotic resistance and β-lactamase inhibition by mechanism-based inactivators: Perspectives and future directions FEMS Microbiol. Rev. 24, 251-262
    • (2000) FEMS Microbiol. Rev. , vol.24 , pp. 251-262
    • Therrien, C.1    Levesque, R.C.2
  • 12
    • 0019326853 scopus 로고
    • The structure of β-lactamases
    • Ambler, R. P. (1980) The structure of β-lactamases Philos. Trans. R. Soc., B 289, 321-331
    • (1980) Philos. Trans. R. Soc., B , vol.289 , pp. 321-331
    • Ambler, R.P.1
  • 13
    • 0031927435 scopus 로고    scopus 로고
    • Metallo-β-lactamases: A class apart
    • Bush, K. (1998) Metallo-β-lactamases: A class apart Clin. Infect. Dis. 27 (Suppl. 1) S48-S53
    • (1998) Clin. Infect. Dis. , vol.27 , pp. 48-S53
    • Bush, K.1
  • 14
    • 37349021516 scopus 로고    scopus 로고
    • Evolution of extended-spectrum β-lactamases by mutation
    • Gniadkowski, M. (2008) Evolution of extended-spectrum β-lactamases by mutation Clin. Microbiol. Infect. 14 (Suppl. 1) 11-32
    • (2008) Clin. Microbiol. Infect. , vol.14 , pp. 11-32
    • Gniadkowski, M.1
  • 15
    • 77149165713 scopus 로고    scopus 로고
    • Updated functional classification of β-lactamases
    • Bush, K. and Jacoby, G. A. (2010) Updated functional classification of β-lactamases Antimicrob. Agents Chemother. 54, 969-976
    • (2010) Antimicrob. Agents Chemother. , vol.54 , pp. 969-976
    • Bush, K.1    Jacoby, G.A.2
  • 17
    • 84888615316 scopus 로고    scopus 로고
    • Class D β-lactamases: A reappraisal after five decades
    • Leonard, D. A., Bonomo, R. A., and Powers, R. A. (2013) Class D β-lactamases: A reappraisal after five decades Acc. Chem. Res. 46, 2407-2415
    • (2013) Acc. Chem. Res. , vol.46 , pp. 2407-2415
    • Leonard, D.A.1    Bonomo, R.A.2    Powers, R.A.3
  • 18
    • 73849084148 scopus 로고    scopus 로고
    • Diversity, epidemiology, and genetics of class D β-lactamases
    • Poirel, L., Naas, T., and Nordmann, P. (2010) Diversity, epidemiology, and genetics of class D β-lactamases Antimicrob. Agents Chemother. 54, 24-38
    • (2010) Antimicrob. Agents Chemother. , vol.54 , pp. 24-38
    • Poirel, L.1    Naas, T.2    Nordmann, P.3
  • 20
    • 0035807996 scopus 로고    scopus 로고
    • Critical involvement of a carbamylated lysine in catalytic function of class D β-lactamases
    • Golemi, D., Maveyraud, L., Vakulenko, S., Samama, J. P., and Mobashery, S. (2001) Critical involvement of a carbamylated lysine in catalytic function of class D β-lactamases Proc. Natl. Acad. Sci. U.S.A. 98, 14280-14285
    • (2001) Proc. Natl. Acad. Sci. U.S.A. , vol.98 , pp. 14280-14285
    • Golemi, D.1    Maveyraud, L.2    Vakulenko, S.3    Samama, J.P.4    Mobashery, S.5
  • 24
    • 0037228293 scopus 로고    scopus 로고
    • Genetic and functional analysis of the chromosome-encoded carbapenem-hydrolyzing oxacillinase OXA-40 of Acinetobacter baumannii
    • Heritier, C., Poirel, L., Aubert, D., and Nordmann, P. (2003) Genetic and functional analysis of the chromosome-encoded carbapenem-hydrolyzing oxacillinase OXA-40 of Acinetobacter baumannii Antimicrob. Agents Chemother. 47, 268-273
    • (2003) Antimicrob. Agents Chemother. , vol.47 , pp. 268-273
    • Heritier, C.1    Poirel, L.2    Aubert, D.3    Nordmann, P.4
  • 26
    • 0029071785 scopus 로고
    • A functional classification scheme for β-lactamases and its correlation with molecular structure
    • Bush, K., Jacoby, G. A., and Medeiros, A. A. (1995) A functional classification scheme for β-lactamases and its correlation with molecular structure Antimicrob. Agents Chemother. 39, 1211-1233
    • (1995) Antimicrob. Agents Chemother. , vol.39 , pp. 1211-1233
    • Bush, K.1    Jacoby, G.A.2    Medeiros, A.A.3
  • 27
    • 84872858103 scopus 로고    scopus 로고
    • Proliferation and significance of clinically relevant β-lactamases
    • Bush, K. (2013) Proliferation and significance of clinically relevant β-lactamases Ann. N.Y. Acad. Sci. 1277, 84-90
    • (2013) Ann. N.Y. Acad. Sci. , vol.1277 , pp. 84-90
    • Bush, K.1
  • 28
  • 30
    • 84921823308 scopus 로고    scopus 로고
    • A Case of IMP-4-, OXA-421-, OXA-96-, and CARB-2-Producing Acinetobacter pittii Sequence Type 119 in Australia
    • Kamolvit, W., Derrington, P., Paterson, D. L., and Sidjabat, H. E. (2015) A Case of IMP-4-, OXA-421-, OXA-96-, and CARB-2-Producing Acinetobacter pittii Sequence Type 119 in Australia J. Clin. Microbiol. 53, 727-730
    • (2015) J. Clin. Microbiol. , vol.53 , pp. 727-730
    • Kamolvit, W.1    Derrington, P.2    Paterson, D.L.3    Sidjabat, H.E.4
  • 31
    • 69949174478 scopus 로고    scopus 로고
    • Has the era of untreatable infections arrived?
    • Livermore, D. M. (2009) Has the era of untreatable infections arrived? J. Antimicrob. Chemother. 64 (Suppl. 1) i29-i36
    • (2009) J. Antimicrob. Chemother. , vol.64 , pp. 29-i36
    • Livermore, D.M.1
  • 32
    • 84926465439 scopus 로고    scopus 로고
    • Heterogeneous hydrolytic features for OXA-48-like β-lactamases
    • Oueslati, S., Nordmann, P., and Poirel, L. (2015) Heterogeneous hydrolytic features for OXA-48-like β-lactamases J. Antimicrob. Chemother. DOI: 10.1093/jac/dku524
    • (2015) J. Antimicrob. Chemother.
    • Oueslati, S.1    Nordmann, P.2    Poirel, L.3
  • 33
    • 0347951399 scopus 로고    scopus 로고
    • Emergence of oxacillinase-mediated resistance to imipenem in Klebsiella pneumoniae
    • Poirel, L., Heritier, C., Tolun, V., and Nordmann, P. (2004) Emergence of oxacillinase-mediated resistance to imipenem in Klebsiella pneumoniae Antimicrob. Agents Chemother. 48, 15-22
    • (2004) Antimicrob. Agents Chemother. , vol.48 , pp. 15-22
    • Poirel, L.1    Heritier, C.2    Tolun, V.3    Nordmann, P.4
  • 38
    • 0034476988 scopus 로고    scopus 로고
    • Insights into class D β-lactamases are revealed by the crystal structure of the OXA10 enzyme from Pseudomonas aeruginosa
    • Maveyraud, L., Golemi, D., Kotra, L. P., Tranier, S., Vakulenko, S., Mobashery, S., and Samama, J. P. (2000) Insights into class D β-lactamases are revealed by the crystal structure of the OXA10 enzyme from Pseudomonas aeruginosa Structure 8, 1289-1298
    • (2000) Structure , vol.8 , pp. 1289-1298
    • Maveyraud, L.1    Golemi, D.2    Kotra, L.P.3    Tranier, S.4    Vakulenko, S.5    Mobashery, S.6    Samama, J.P.7
  • 39
  • 40
    • 0033937550 scopus 로고    scopus 로고
    • Overexpression and biosynthetic deuterium enrichment of TEM-1 β-lactamase for structural characterization by magnetic resonance methods
    • Sosa-Peinado, A., Mustafi, D., and Makinen, M. W. (2000) Overexpression and biosynthetic deuterium enrichment of TEM-1 β-lactamase for structural characterization by magnetic resonance methods Protein Expression Purif. 19, 235-245
    • (2000) Protein Expression Purif. , vol.19 , pp. 235-245
    • Sosa-Peinado, A.1    Mustafi, D.2    Makinen, M.W.3
  • 42
    • 84927740260 scopus 로고    scopus 로고
    • A triple mutant in the loop of TEM-1 β-Lactamase Changes the Substrate Profile via a Large Conformational Change and an Altered General Base for Catalysis
    • Stojanoski, V., Chow, D. C., Hu, L., Sankaran, B., Gilbert, H. F., Prasad, B. V., and Palzkill, T. (2015) A Triple Mutant in the loop of TEM-1 β-Lactamase Changes the Substrate Profile via a Large Conformational Change and an Altered General Base for Catalysis J. Biol. Chem. 290, 10382-10394
    • (2015) J. Biol. Chem. , vol.290 , pp. 10382-10394
    • Stojanoski, V.1    Chow, D.C.2    Hu, L.3    Sankaran, B.4    Gilbert, H.F.5    Prasad, B.V.6    Palzkill, T.7
  • 43
    • 0028305919 scopus 로고
    • The calculation of initial velocity from product progress curves when [S] K m
    • Wahl, R. C. (1994) The calculation of initial velocity from product progress curves when [S] K m Anal. Biochem. 219, 383-384
    • (1994) Anal. Biochem. , vol.219 , pp. 383-384
    • Wahl, R.C.1
  • 44
    • 0035144848 scopus 로고    scopus 로고
    • OXA-28, an extended-spectrum variant of OXA-10 β-lactamase from Pseudomonas aeruginosa and its plasmid- and integron-located gene
    • Poirel, L., Girlich, D., Naas, T., and Nordmann, P. (2001) OXA-28, an extended-spectrum variant of OXA-10 β-lactamase from Pseudomonas aeruginosa and its plasmid- and integron-located gene Antimicrob. Agents Chemother. 45, 447-453
    • (2001) Antimicrob. Agents Chemother. , vol.45 , pp. 447-453
    • Poirel, L.1    Girlich, D.2    Naas, T.3    Nordmann, P.4
  • 46
    • 79953759821 scopus 로고    scopus 로고
    • IMOSFLM: A new graphical interface for diffraction-image processing with MOSFLM
    • Battye, T. G., Kontogiannis, L., Johnson, O., Powell, H. R., and Leslie, A. G. (2011) iMOSFLM: A new graphical interface for diffraction-image processing with MOSFLM Acta Crystallogr. D67, 271-281
    • (2011) Acta Crystallogr. , vol.67 , pp. 271-281
    • Battye, T.G.1    Kontogiannis, L.2    Johnson, O.3    Powell, H.R.4    Leslie, A.G.5
  • 47
    • 74549194551 scopus 로고    scopus 로고
    • Molecular replacement with MOLREP
    • Vagin, A. and Teplyakov, A. (2010) Molecular replacement with MOLREP Acta Crystallogr. D66, 22-25
    • (2010) Acta Crystallogr. , vol.66 , pp. 22-25
    • Vagin, A.1    Teplyakov, A.2
  • 53
    • 54949108677 scopus 로고    scopus 로고
    • PubChem: Integrated platform of small molecules and biological activities
    • In, Chapter 12, American Chemical Society, Washington, DC
    • Bolton, E., Wang, Y., Thiessen, P. A., and Bryant, S. H. (2008) PubChem: Integrated Platform of Small Molecules and Biological Activities. In Annual Reports in Computational Chemistry, Chapter 12, American Chemical Society, Washington, DC.
    • (2008) Annual Reports in Computational Chemistry
    • Bolton, E.1    Wang, Y.2    Thiessen, P.A.3    Bryant, S.H.4
  • 54
    • 76149120388 scopus 로고    scopus 로고
    • AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading
    • Trott, O. and Olson, A. J. (2010) AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading J. Comput. Chem. 31, 455-461
    • (2010) J. Comput. Chem. , vol.31 , pp. 455-461
    • Trott, O.1    Olson, A.J.2
  • 55
    • 11644261806 scopus 로고    scopus 로고
    • Automated Docking Using a Lamarckian Genetic Algorithm and and Empirical Binding Free Energy Function
    • Morris, G. M., Goodsell, D. S., Halliday, R. S., Huey, R., Hart, W. E., Belew, R. K., and Olson, A. J. (1998) Automated Docking Using a Lamarckian Genetic Algorithm and and Empirical Binding Free Energy Function J. Comput. Chem. 19, 1639-1662
    • (1998) J. Comput. Chem. , vol.19 , pp. 1639-1662
    • Morris, G.M.1    Goodsell, D.S.2    Halliday, R.S.3    Huey, R.4    Hart, W.E.5    Belew, R.K.6    Olson, A.J.7
  • 57
    • 13444307044 scopus 로고    scopus 로고
    • Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
    • Krissinel, E. and Henrick, K. (2004) Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions Acta Crystallogr. D60, 2256-2268
    • (2004) Acta Crystallogr. , vol.60 , pp. 2256-2268
    • Krissinel, E.1    Henrick, K.2
  • 59
    • 77951249585 scopus 로고    scopus 로고
    • Crystal structure of the narrow-spectrum OXA-46 class D β-lactamase: Relationship between active-site lysine carbamylation and inhibition by polycarboxylates
    • Docquier, J. D., Benvenuti, M., Calderone, V., Giuliani, F., Kapetis, D., De Luca, F., Rossolini, G. M., and Mangani, S. (2010) Crystal structure of the narrow-spectrum OXA-46 class D β-lactamase: Relationship between active-site lysine carbamylation and inhibition by polycarboxylates Antimicrob. Agents Chemother. 54, 2167-2174
    • (2010) Antimicrob. Agents Chemother. , vol.54 , pp. 2167-2174
    • Docquier, J.D.1    Benvenuti, M.2    Calderone, V.3    Giuliani, F.4    Kapetis, D.5    De Luca, F.6    Rossolini, G.M.7    Mangani, S.8
  • 63
    • 79955878936 scopus 로고    scopus 로고
    • Anion binding to hydrophobic concavity is central to the salting-in effects of Hofmeister chaotropes
    • Gibb, C. L. and Gibb, B. C. (2011) Anion binding to hydrophobic concavity is central to the salting-in effects of Hofmeister chaotropes J. Am. Chem. Soc. 133, 7344-7347
    • (2011) J. Am. Chem. Soc. , vol.133 , pp. 7344-7347
    • Gibb, C.L.1    Gibb, B.C.2
  • 65
    • 72449185587 scopus 로고    scopus 로고
    • The 1.4 Å crystal structure of the class D β-lactamase OXA-1 complexed with doripenem
    • Schneider, K. D., Karpen, M. E., Bonomo, R. A., Leonard, D. A., and Powers, R. A. (2009) The 1.4 Å crystal structure of the class D β-lactamase OXA-1 complexed with doripenem Biochemistry 48, 11840-11847
    • (2009) Biochemistry , vol.48 , pp. 11840-11847
    • Schneider, K.D.1    Karpen, M.E.2    Bonomo, R.A.3    Leonard, D.A.4    Powers, R.A.5
  • 66
    • 84879392285 scopus 로고    scopus 로고
    • Expulsion of ions from hydrophobic hydration shells
    • Rankin, B. M. and Ben-Amotz, D. (2013) Expulsion of ions from hydrophobic hydration shells J. Am. Chem. Soc. 135, 8818-8821
    • (2013) J. Am. Chem. Soc. , vol.135 , pp. 8818-8821
    • Rankin, B.M.1    Ben-Amotz, D.2
  • 67
    • 77957857749 scopus 로고    scopus 로고
    • Average local ionization energy: A review
    • Politzer, P., Murray, J. S., and Bulat, F. A. (2010) Average local ionization energy: A review J. Mol. Model. 16, 1731-1742
    • (2010) J. Mol. Model. , vol.16 , pp. 1731-1742
    • Politzer, P.1    Murray, J.S.2    Bulat, F.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.