-
1
-
-
77957242540
-
It's the machine that matters: Predicting gene function and phenotype from protein networks
-
Wang PI, Marcotte EM, It's the machine that matters: Predicting gene function and phenotype from protein networks. J Proteomics. 2010;73: 2277–2289. doi: 10.1016/j.jprot.2010.07.005 20637909
-
(2010)
J Proteomics
, vol.73
, pp. 2277-2289
-
-
Wang, P.I.1
Marcotte, E.M.2
-
2
-
-
84862703457
-
Interactome mapping for analysis of complex phenotypes: insights from benchmarking binary interaction assays
-
Braun P, Interactome mapping for analysis of complex phenotypes: insights from benchmarking binary interaction assays. Proteomics. 2012;12: 1499–1518. doi: 10.1002/pmic.201100598 22589225
-
(2012)
Proteomics
, vol.12
, pp. 1499-1518
-
-
Braun, P.1
-
3
-
-
1542345539
-
Increasing specificity in high-throughput yeast two-hybrid experiments
-
Vidalain PO, Boxem M, Ge H, Li S, Vidal M, Increasing specificity in high-throughput yeast two-hybrid experiments. Methods. 2004;32: 363–370. 15003598
-
(2004)
Methods
, vol.32
, pp. 363-370
-
-
Vidalain, P.O.1
Boxem, M.2
Ge, H.3
Li, S.4
Vidal, M.5
-
4
-
-
0037161731
-
Comparative assessment of large-scale data sets of protein-protein interactions
-
von Mering C, Krause R, Snel B, Cornell M, Oliver SG, Fields S, et al. Comparative assessment of large-scale data sets of protein-protein interactions. Nature. 2002;417: 399–403. 12000970
-
(2002)
Nature
, vol.417
, pp. 399-403
-
-
von Mering, C.1
Krause, R.2
Snel, B.3
Cornell, M.4
Oliver, S.G.5
Fields, S.6
-
5
-
-
0037432528
-
How reliable are experimental protein-protein interaction data?
-
Sprinzak E, Sattath S, Margalit H, How reliable are experimental protein-protein interaction data? J Mol Biol. 2003;327: 919–923. 12662919
-
(2003)
J Mol Biol
, vol.327
, pp. 919-923
-
-
Sprinzak, E.1
Sattath, S.2
Margalit, H.3
-
6
-
-
34247586171
-
Deciphering protein-protein interactions. Part II. Computational methods to predict protein and domain interaction partners
-
Shoemaker BA, Panchenko AR, Deciphering protein-protein interactions. Part II. Computational methods to predict protein and domain interaction partners. PLoS Comput Biol. 2007;3: e43. 17465672
-
(2007)
PLoS Comput Biol
, vol.3
, pp. e43
-
-
Shoemaker, B.A.1
Panchenko, A.R.2
-
7
-
-
84901979488
-
Structural bioinformatics of the interactome
-
Petrey D, Honig B, Structural bioinformatics of the interactome. Annu Rev Biophys. 2014;43: 193–210. doi: 10.1146/annurev-biophys-051013-022726 24895853
-
(2014)
Annu Rev Biophys
, vol.43
, pp. 193-210
-
-
Petrey, D.1
Honig, B.2
-
8
-
-
0035211290
-
Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs"
-
Matthews LR, Vaglio P, Reboul J, Ge H, Davis BP, Garrels J, et al. Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs". Genome Res. 2001;11: 2120–2126. 11731503
-
(2001)
Genome Res
, vol.11
, pp. 2120-2126
-
-
Matthews, L.R.1
Vaglio, P.2
Reboul, J.3
Ge, H.4
Davis, B.P.5
Garrels, J.6
-
9
-
-
84875225476
-
Emerging methods in protein co-evolution
-
de Juan D, Pazos F, Valencia A, Emerging methods in protein co-evolution. Nat Rev Genet. 2013;14: 249–261. doi: 10.1038/nrg3414 23458856
-
(2013)
Nat Rev Genet
, vol.14
, pp. 249-261
-
-
de Juan, D.1
Pazos, F.2
Valencia, A.3
-
10
-
-
0032169271
-
Conservation of gene order: a fingerprint of proteins that physically interact
-
Dandekar T, Snel B, Huynen M, Bork P, Conservation of gene order: a fingerprint of proteins that physically interact. Trends Biochem Sci. 1998;23: 324–328. 9787636
-
(1998)
Trends Biochem Sci
, vol.23
, pp. 324-328
-
-
Dandekar, T.1
Snel, B.2
Huynen, M.3
Bork, P.4
-
11
-
-
33847064282
-
Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae
-
Reguly T, Breitkreutz A, Boucher L, Breitkreutz BJ, Hon GC, Myers CL, et al. Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae. J Biol. 2006;5: 11. 16762047
-
(2006)
J Biol
, vol.5
, pp. 11
-
-
Reguly, T.1
Breitkreutz, A.2
Boucher, L.3
Breitkreutz, B.J.4
Hon, G.C.5
Myers, C.L.6
-
12
-
-
84871967106
-
Interactome3D: adding structural details to protein networks
-
Mosca R, Ceol A, Aloy P, Interactome3D: adding structural details to protein networks. Nat Methods. 2013;10: 47–53. doi: 10.1038/nmeth.2289 23399932
-
(2013)
Nat Methods
, vol.10
, pp. 47-53
-
-
Mosca, R.1
Ceol, A.2
Aloy, P.3
-
13
-
-
84867881743
-
Structure-based prediction of protein-protein interactions on a genome-wide scale
-
Zhang QC, Petrey D, Deng L, Qiang L, Shi Y, Thu CA, et al. Structure-based prediction of protein-protein interactions on a genome-wide scale. Nature. 2012;490: 556–560. doi: 10.1038/nature11503 23023127
-
(2012)
Nature
, vol.490
, pp. 556-560
-
-
Zhang, Q.C.1
Petrey, D.2
Deng, L.3
Qiang, L.4
Shi, Y.5
Thu, C.A.6
-
14
-
-
84876515907
-
STRING v9.1: protein-protein interaction networks, with increased coverage and integration
-
Franceschini A, Szklarczyk D, Frankild S, Kuhn M, Simonovic M, Roth A, et al. STRING v9.1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Res. 2013;41: D808–D815. doi: 10.1093/nar/gks1094 23203871
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D808-D815
-
-
Franceschini, A.1
Szklarczyk, D.2
Frankild, S.3
Kuhn, M.4
Simonovic, M.5
Roth, A.6
-
15
-
-
0037453510
-
Assembly of cell regulatory systems through protein interaction domains
-
Pawson T, Nash P, Assembly of cell regulatory systems through protein interaction domains. Science. 2003;300: 445–452. 12702867
-
(2003)
Science
, vol.300
, pp. 445-452
-
-
Pawson, T.1
Nash, P.2
-
16
-
-
49549083915
-
Peptide-mediated interactions in biological systems: new discoveries and applications
-
Petsalaki E, Russell RB, Peptide-mediated interactions in biological systems: new discoveries and applications. Curr Opin Biotechnol. 2008;19: 344–350. doi: 10.1016/j.copbio.2008.06.004 18602004
-
(2008)
Curr Opin Biotechnol
, vol.19
, pp. 344-350
-
-
Petsalaki, E.1
Russell, R.B.2
-
17
-
-
84904469894
-
A million peptide motifs for the molecular biologist
-
Tompa P, Davey NE, Gibson TJ, Babu MM, A million peptide motifs for the molecular biologist. Mol Cell. 2014;55: 161–169. doi: 10.1016/j.molcel.2014.05.032 25038412
-
(2014)
Mol Cell
, vol.55
, pp. 161-169
-
-
Tompa, P.1
Davey, N.E.2
Gibson, T.J.3
Babu, M.M.4
-
18
-
-
84902446852
-
Short linear motifs: ubiquitous and functionally diverse protein interaction modules directing cell regulation
-
Van Roey K, Uyar B, Weatheritt RJ, Dinkel H, Seiler M, Budd A, et al. Short linear motifs: ubiquitous and functionally diverse protein interaction modules directing cell regulation. Chem Rev. 2014;114: 6733–6778. doi: 10.1021/cr400585q 24926813
-
(2014)
Chem Rev
, vol.114
, pp. 6733-6778
-
-
Van Roey, K.1
Uyar, B.2
Weatheritt, R.J.3
Dinkel, H.4
Seiler, M.5
Budd, A.6
-
19
-
-
84862642911
-
High-throughput analysis of peptide-binding modules
-
Liu BA, Engelmann BW, Nash PD, High-throughput analysis of peptide-binding modules. Proteomics. 2012;12: 1527–1546. doi: 10.1002/pmic.201100599 22610655
-
(2012)
Proteomics
, vol.12
, pp. 1527-1546
-
-
Liu, B.A.1
Engelmann, B.W.2
Nash, P.D.3
-
20
-
-
70350404403
-
Bayesian modeling of the yeast SH3 domain interactome predicts spatiotemporal dynamics of endocytosis proteins
-
Tonikian R, Xin X, Toret CP, Gfeller D, Landgraf C, Panni S, et al. Bayesian modeling of the yeast SH3 domain interactome predicts spatiotemporal dynamics of endocytosis proteins. PLoS Biol. 2009;7: e1000218. doi: 10.1371/journal.pbio.1000218 19841731
-
(2009)
PLoS Biol
, vol.7
, pp. e1000218
-
-
Tonikian, R.1
Xin, X.2
Toret, C.P.3
Gfeller, D.4
Landgraf, C.5
Panni, S.6
-
21
-
-
19344377539
-
Protein interaction networks by proteome peptide scanning
-
Landgraf C, Panni S, Montecchi-Palazzi L, Castagnoli L, Schneider-Mergener J, Volkmer-Engert R, et al. Protein interaction networks by proteome peptide scanning. PLoS Biol. 2004;2: E14. 14737190
-
(2004)
PLoS Biol
, vol.2
, pp. E14
-
-
Landgraf, C.1
Panni, S.2
Montecchi-Palazzi, L.3
Castagnoli, L.4
Schneider-Mergener, J.5
Volkmer-Engert, R.6
-
22
-
-
51349085386
-
Predicting PDZ domain-peptide interactions from primary sequences
-
Chen JR, Chang BH, Allen JE, Stiffler MA, MacBeath G, Predicting PDZ domain-peptide interactions from primary sequences. Nat Biotechnol. 2008;26: 1041–1045. doi: 10.1038/nbt.1489 18711339
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1041-1045
-
-
Chen, J.R.1
Chang, B.H.2
Allen, J.E.3
Stiffler, M.A.4
MacBeath, G.5
-
23
-
-
33645776269
-
Computational analysis and prediction of the binding motif and protein interacting partners of the Abl SH3 domain
-
Hou T, Chen K, McLaughlin WA, Lu B, Wang W, Computational analysis and prediction of the binding motif and protein interacting partners of the Abl SH3 domain. PLoS Comput Biol. 2006;2: e1. 16446784
-
(2006)
PLoS Comput Biol
, vol.2
, pp. e1
-
-
Hou, T.1
Chen, K.2
McLaughlin, W.A.3
Lu, B.4
Wang, W.5
-
24
-
-
42949092832
-
Genome-wide prediction of SH2 domain targets using structural information and the FoldX algorithm
-
Sanchez IE, Beltrao P, Stricher F, Schymkowitz J, Ferkinghoff-Borg J, Rousseau F, et al. Genome-wide prediction of SH2 domain targets using structural information and the FoldX algorithm. PLoS Comput Biol. 2008;4: e1000052. doi: 10.1371/journal.pcbi.1000052 18389064
-
(2008)
PLoS Comput Biol
, vol.4
, pp. e1000052
-
-
Sanchez, I.E.1
Beltrao, P.2
Stricher, F.3
Schymkowitz, J.4
Ferkinghoff-Borg, J.5
Rousseau, F.6
-
25
-
-
80055068044
-
Identification of a novel class of farnesylation targets by structure-based modeling of binding specificity
-
London N, Lamphear CL, Hougland JL, Fierke CA, Schueler-Furman O, Identification of a novel class of farnesylation targets by structure-based modeling of binding specificity. PLoS Comput Biol. 2011;7: e1002170. doi: 10.1371/journal.pcbi.1002170 21998565
-
(2011)
PLoS Comput Biol
, vol.7
, pp. e1002170
-
-
London, N.1
Lamphear, C.L.2
Hougland, J.L.3
Fierke, C.A.4
Schueler-Furman, O.5
-
26
-
-
84903397360
-
Genome-wide prediction and validation of peptides that bind human prosurvival Bcl-2 proteins
-
DeBartolo J, Taipale M, Keating AE, Genome-wide prediction and validation of peptides that bind human prosurvival Bcl-2 proteins. PLoS Comput Biol. 2014;10: e1003693. doi: 10.1371/journal.pcbi.1003693 24967846
-
(2014)
PLoS Comput Biol
, vol.10
, pp. e1003693
-
-
DeBartolo, J.1
Taipale, M.2
Keating, A.E.3
-
27
-
-
84864579478
-
Domain-mediated protein interaction prediction: From genome to network
-
Reimand J, Hui S, Jain S, Law B, Bader GD, Domain-mediated protein interaction prediction: From genome to network. FEBS Lett. 2012;586: 2751–2763. doi: 10.1016/j.febslet.2012.04.027 22561014
-
(2012)
FEBS Lett
, vol.586
, pp. 2751-2763
-
-
Reimand, J.1
Hui, S.2
Jain, S.3
Law, B.4
Bader, G.D.5
-
28
-
-
84891752434
-
The eukaryotic linear motif resource ELM: 10 years and counting
-
Dinkel H, Van Roey K, Michael S, Davey NE, Weatheritt RJ, Born D, et al. The eukaryotic linear motif resource ELM: 10 years and counting. Nucleic Acids Res. 2014;42: D259–D266. doi: 10.1093/nar/gkt1047 24214962
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D259-D266
-
-
Dinkel, H.1
Van Roey, K.2
Michael, S.3
Davey, N.E.4
Weatheritt, R.J.5
Born, D.6
-
29
-
-
84859225975
-
The identification of short linear motif-mediated interfaces within the human interactome
-
Weatheritt RJ, Luck K, Petsalaki E, Davey NE, Gibson TJ, The identification of short linear motif-mediated interfaces within the human interactome. Bioinformatics. 2012;28: 976–982. doi: 10.1093/bioinformatics/bts072 22328783
-
(2012)
Bioinformatics
, vol.28
, pp. 976-982
-
-
Weatheritt, R.J.1
Luck, K.2
Petsalaki, E.3
Davey, N.E.4
Gibson, T.J.5
-
30
-
-
77955476975
-
Novel peptide-mediated interactions derived from high-resolution 3-dimensional structures
-
Stein A, Aloy P, Novel peptide-mediated interactions derived from high-resolution 3-dimensional structures. PLoS Comput Biol. 2010;6: e1000789. doi: 10.1371/journal.pcbi.1000789 20502673
-
(2010)
PLoS Comput Biol
, vol.6
, pp. e1000789
-
-
Stein, A.1
Aloy, P.2
-
31
-
-
75849126506
-
The structural basis of peptide-protein binding strategies
-
London N, Movshovitz-Attias D, Schueler-Furman O, The structural basis of peptide-protein binding strategies. Structure. 2010;18: 188–199. doi: 10.1016/j.str.2009.11.012 20159464
-
(2010)
Structure
, vol.18
, pp. 188-199
-
-
London, N.1
Movshovitz-Attias, D.2
Schueler-Furman, O.3
-
32
-
-
34249695447
-
Local structural disorder imparts plasticity on linear motifs
-
Fuxreiter M, Tompa P, Simon I, Local structural disorder imparts plasticity on linear motifs. Bioinformatics. 2007;23: 950–956. 17387114
-
(2007)
Bioinformatics
, vol.23
, pp. 950-956
-
-
Fuxreiter, M.1
Tompa, P.2
Simon, I.3
-
33
-
-
43249115776
-
A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences
-
Chica C, Labarga A, Gould CM, Lopez R, Gibson TJ, A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences. BMC Bioinformatics. 2008;9: 229. doi: 10.1186/1471-2105-9-229 18460207
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 229
-
-
Chica, C.1
Labarga, A.2
Gould, C.M.3
Lopez, R.4
Gibson, T.J.5
-
34
-
-
75549088586
-
PepX: a structural database of non-redundant protein-peptide complexes
-
Vanhee P, Reumers J, Stricher F, Baeten L, Serrano L, Schymkowitz J, et al. PepX: a structural database of non-redundant protein-peptide complexes. Nucleic Acids Res. 2010;38: D545–D551. doi: 10.1093/nar/gkp893 19880386
-
(2010)
Nucleic Acids Res
, vol.38
, pp. D545-D551
-
-
Vanhee, P.1
Reumers, J.2
Stricher, F.3
Baeten, L.4
Serrano, L.5
Schymkowitz, J.6
-
35
-
-
33644874394
-
MODBASE: a database of annotated comparative protein structure models and associated resources
-
Pieper U, Eswar N, Davis FP, Braberg H, Madhusudhan MS, Rossi A, et al. MODBASE: a database of annotated comparative protein structure models and associated resources. Nucleic Acids Res. 2006;34: D291–D295. 16381869
-
(2006)
Nucleic Acids Res
, vol.34
, pp. D291-D295
-
-
Pieper, U.1
Eswar, N.2
Davis, F.P.3
Braberg, H.4
Madhusudhan, M.S.5
Rossi, A.6
-
36
-
-
33847069615
-
Strategies for high-throughput comparative modeling: applications to leverage analysis in structural genomics and protein family organization
-
Mirkovic N, Li Z, Parnassa A, Murray D, Strategies for high-throughput comparative modeling: applications to leverage analysis in structural genomics and protein family organization. Proteins. 2007;66: 766–777. 17154423
-
(2007)
Proteins
, vol.66
, pp. 766-777
-
-
Mirkovic, N.1
Li, Z.2
Parnassa, A.3
Murray, D.4
-
37
-
-
3543047963
-
Where did the BLOSUM62 alignment score matrix come from?
-
Eddy SR, Where did the BLOSUM62 alignment score matrix come from? Nat Biotechnol. 2004;22: 1035–1036. 15286655
-
(2004)
Nat Biotechnol
, vol.22
, pp. 1035-1036
-
-
Eddy, S.R.1
-
38
-
-
0142052944
-
A Bayesian networks approach for predicting protein-protein interactions from genomic data
-
Jansen R, Yu H, Greenbaum D, Kluger Y, Krogan NJ, Chung S, et al. A Bayesian networks approach for predicting protein-protein interactions from genomic data. Science. 2003;302: 449–453. 14564010
-
(2003)
Science
, vol.302
, pp. 449-453
-
-
Jansen, R.1
Yu, H.2
Greenbaum, D.3
Kluger, Y.4
Krogan, N.J.5
Chung, S.6
-
39
-
-
84891783174
-
Activities at the Universal Protein Resource (UniProt)
-
The UniProt Consortium. Activities at the Universal Protein Resource (UniProt). Nucleic Acids Res. 2014;42: D191–D198. doi: 10.1093/nar/gkt1140 24253303
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D191-D198
-
-
-
40
-
-
75549090603
-
The Pfam protein families database
-
Finn RD, Mistry J, Tate J, Coggill P, Heger A, Pollington JE, et al. The Pfam protein families database. Nucleic Acids Res. 2010;38: D211–D222. doi: 10.1093/nar/gkp985 19920124
-
(2010)
Nucleic Acids Res
, vol.38
, pp. D211-D222
-
-
Finn, R.D.1
Mistry, J.2
Tate, J.3
Coggill, P.4
Heger, A.5
Pollington, J.E.6
-
41
-
-
79959931985
-
HMMER web server: interactive sequence similarity searching
-
Finn RD, Clements J, Eddy SR, HMMER web server: interactive sequence similarity searching. Nucleic Acids Res. 2011;39: W29–W37. doi: 10.1093/nar/gkr367 21593126
-
(2011)
Nucleic Acids Res
, vol.39
, pp. W29-W37
-
-
Finn, R.D.1
Clements, J.2
Eddy, S.R.3
-
42
-
-
0034682881
-
An integrated approach to the analysis and modeling of protein sequences and structures. I. Protein structural alignment and a quantitative measure for protein structural distance
-
Yang AS, Honig B, An integrated approach to the analysis and modeling of protein sequences and structures. I. Protein structural alignment and a quantitative measure for protein structural distance. J Mol Biol. 2000;301: 665–678. 10966776
-
(2000)
J Mol Biol
, vol.301
, pp. 665-678
-
-
Yang, A.S.1
Honig, B.2
-
43
-
-
0026319199
-
Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons
-
Nicholls A, Sharp KA, Honig B, Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins. 1991;11: 281–296. 1758883
-
(1991)
Proteins
, vol.11
, pp. 281-296
-
-
Nicholls, A.1
Sharp, K.A.2
Honig, B.3
-
44
-
-
24044538903
-
IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content
-
Dosztanyi Z, Csizmok V, Tompa P, Simon I, IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content. Bioinformatics. 2005;21: 3433–3434. 15955779
-
(2005)
Bioinformatics
, vol.21
, pp. 3433-3434
-
-
Dosztanyi, Z.1
Csizmok, V.2
Tompa, P.3
Simon, I.4
-
45
-
-
34547588388
-
The SLiMDisc server: short, linear motif discovery in proteins
-
Davey NE, Edwards RJ, Shields DC, The SLiMDisc server: short, linear motif discovery in proteins. Nucleic Acids Res. 2007;35: W455–W459. 17576682
-
(2007)
Nucleic Acids Res
, vol.35
, pp. W455-W459
-
-
Davey, N.E.1
Edwards, R.J.2
Shields, D.C.3
-
46
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar RC, MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004;32: 1792–1797. 15034147
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
47
-
-
60149099647
-
Masking residues using context-specific evolutionary conservation significantly improves short linear motif discovery
-
Davey NE, Shields DC, Edwards RJ, Masking residues using context-specific evolutionary conservation significantly improves short linear motif discovery. Bioinformatics. 2009;25: 443–450. doi: 10.1093/bioinformatics/btn664 19136552
-
(2009)
Bioinformatics
, vol.25
, pp. 443-450
-
-
Davey, N.E.1
Shields, D.C.2
Edwards, R.J.3
-
48
-
-
0033971642
-
DIP: the database of interacting proteins
-
Xenarios I, Rice DW, Salwinski L, Baron MK, Marcotte EM, Eisenberg D, DIP: the database of interacting proteins. Nucleic Acids Res. 2000;28: 289–291. 10592249
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 289-291
-
-
Xenarios, I.1
Rice, D.W.2
Salwinski, L.3
Baron, M.K.4
Marcotte, E.M.5
Eisenberg, D.6
-
49
-
-
9144248312
-
IntAct: an open source molecular interaction database
-
Hermjakob H, Montecchi-Palazzi L, Lewington C, Mudali S, Kerrien S, Orchard S, et al. IntAct: an open source molecular interaction database. Nucleic Acids Res. 2004;32: D452–D455. 14681455
-
(2004)
Nucleic Acids Res
, vol.32
, pp. D452-D455
-
-
Hermjakob, H.1
Montecchi-Palazzi, L.2
Lewington, C.3
Mudali, S.4
Kerrien, S.5
Orchard, S.6
-
50
-
-
33644873184
-
BioGRID: a general repository for interaction datasets
-
Stark C, Breitkreutz BJ, Reguly T, Boucher L, Breitkreutz A, Tyers M, BioGRID: a general repository for interaction datasets. Nucleic Acids Res. 2006;34: D535–D539. 16381927
-
(2006)
Nucleic Acids Res
, vol.34
, pp. D535-D539
-
-
Stark, C.1
Breitkreutz, B.J.2
Reguly, T.3
Boucher, L.4
Breitkreutz, A.5
Tyers, M.6
-
51
-
-
33846073818
-
MINT: the Molecular INTeraction database
-
Chatr-aryamontri A, Ceol A, Palazzi LM, Nardelli G, Schneider MV, Castagnoli L, et al. MINT: the Molecular INTeraction database. Nucleic Acids Res. 2007;35: D572–D574. 17135203
-
(2007)
Nucleic Acids Res
, vol.35
, pp. D572-D574
-
-
Chatr-aryamontri, A.1
Ceol, A.2
Palazzi, L.M.3
Nardelli, G.4
Schneider, M.V.5
Castagnoli, L.6
-
52
-
-
58149193222
-
Human Protein Reference Database—2009 update
-
Keshava Prasad TS, Goel R, Kandasamy K, Keerthikumar S, Kumar S, Mathivanan S, et al. Human Protein Reference Database—2009 update. Nucleic Acids Res. 2009;37: D767–D772. doi: 10.1093/nar/gkn892 18988627
-
(2009)
Nucleic Acids Res
, vol.37
, pp. D767-D772
-
-
Keshava, P.T.S.1
Goel, R.2
Kandasamy, K.3
Keerthikumar, S.4
Kumar, S.5
Mathivanan, S.6
-
53
-
-
33749249600
-
The relationship between precision-recall and ROC curves
-
Davis J, Goadrich M. The relationship between precision-recall and ROC curves. 23rd International Conference on Machine Learning (ICML). 2006.
-
(2006)
-
-
Davis, J.1
Goadrich, M.2
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