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Volumn 39, Issue 3, 2015, Pages 439-450

Identification and functional annotation of expressed sequence tags based SSR markers of Stevia rebaudiana

Author keywords

EST; Functional annotation; Genetic diversity; SSR; Stevia rebaudiana

Indexed keywords

BIOMARKERS; COST EFFECTIVENESS; DNA SEQUENCES; NUCLEOTIDES; PLANTS (BOTANY);

EID: 84930455580     PISSN: 1300011X     EISSN: 13036173     Source Type: Journal    
DOI: 10.3906/tar-1406-144     Document Type: Article
Times cited : (13)

References (49)
  • 1
    • 0025879424 scopus 로고
    • Complementary DNA sequencing: Expressed sequence tags and human genome project
    • Adams MD, Kelley JM, Gocayne JD (1992). Complementary DNA sequencing: expressed sequence tags and human genome project. Science 252: 1651–1656.
    • (1992) Science , vol.252 , pp. 1651-1656
    • Adams, M.D.1    Kelley, J.M.2    Gocayne, J.D.3
  • 2
    • 33845869870 scopus 로고    scopus 로고
    • Identification, characterization and utilization of EST-derived genic microsatellite markers for genome analyses of coffee and related species
    • Aggarwal RK, Hendre PS, Varshney RK, Bhat PR, Krishnakumar V and Singh L (2007). Identification, characterization and utilization of EST-derived genic microsatellite markers for genome analyses of coffee and related species. Theor Appl Genet 114: 359–372.
    • (2007) Theor Appl Genet , vol.114 , pp. 359-372
    • Aggarwal, R.K.1    Hendre, P.S.2    Varshney, R.K.3    Bhat, P.R.4    Krishnakumar, V.5    Singh, L.6
  • 3
    • 0020028834 scopus 로고
    • Stevia rebaudiana II. High performance liquid chromatographic separation and quantitation of stevioside, rebaudioside-A and rebaudioside-C
    • Ahmed MS Dobberstein RH (1982) Stevia rebaudiana II. High performance liquid chromatographic separation and quantitation of stevioside, rebaudioside-A and rebaudioside-C. J Chromatogr A 236: 519–522.
    • (1982) J Chromatogr A , vol.236 , pp. 519-522
    • Ahmed Ms Dobberstein, R.H.1
  • 4
    • 32344447771 scopus 로고    scopus 로고
    • Target region amplification polymorphism (TRAP) for assessing genetic diversity in sugarcane germplasm collections
    • Alwala S, Suman A, Arro JA, Veremis JC (2006). Target region amplification polymorphism (TRAP) for assessing genetic diversity in sugarcane germplasm collections. Crop Sci 46: 448–455.
    • (2006) Crop Sci , vol.46 , pp. 448-455
    • Alwala, S.1    Suman, A.2    Arro, J.A.3    Veremis, J.C.4
  • 6
    • 0036836919 scopus 로고    scopus 로고
    • Leaf ESTs from Stevia rebaudiana: A resource for gene discovery in diterpene synthesis
    • Brandle JE, Richman A, Swanson AK, Chapman BP (2002). Leaf ESTs from Stevia rebaudiana: a resource for gene discovery in diterpene synthesis. Plant Mol Biol 50: 613–622.
    • (2002) Plant Mol Biol , vol.50 , pp. 613-622
    • Brandle, J.E.1    Richman, A.2    Swanson, A.K.3    Chapman, B.P.4
  • 8
    • 67349277418 scopus 로고    scopus 로고
    • Development and analysis of EST-SSRs for flax (Linum usitatissimum L.)
    • Cloutier S, Niu ZX, Datla R, Duguid S. 2009. Development and analysis of EST-SSRs for flax (Linum usitatissimum L.). Theor Appl Genet 119: 53–63.
    • (2009) Theor Appl Genet , vol.119 , pp. 53-63
    • Cloutier, S.1    Niu, Z.X.2    Datla, R.3    Duguid, S.4
  • 9
    • 24944574340 scopus 로고    scopus 로고
    • Sweet diterpene glycosides balance of a new cultivar of Stevia rebaudiana (Bert.) Bertoni: Isolation and quantitative distribution by chromatographic, spectroscopic, and electrophoretic methods
    • Dacome AS, Da Silva CC, Da Costa CEM, Fontana JD, Adelmann J, Da Costa SC (2005). Sweet diterpene glycosides balance of a new cultivar of Stevia rebaudiana (Bert.) Bertoni: isolation and quantitative distribution by chromatographic, spectroscopic, and electrophoretic methods. Process Biochem 40: 3587–3594.
    • (2005) Process Biochem , vol.40 , pp. 3587-3594
    • Dacome, A.S.1    Da Silva, C.C.2    Da Costa, C.3    Fontana, J.D.4    Adelmann, J.5    Da Costa, S.C.6
  • 10
    • 77957901667 scopus 로고    scopus 로고
    • A fast and costeffective approach to develop and map EST-SSR markers: Oak as a case study
    • Durand J, Bodenes C, Chancerel E, Frigerio JM (2010). A fast and costeffective approach to develop and map EST-SSR markers: oak as a case study. BMC Genomics 11: 570.
    • (2010) BMC Genomics , vol.11 , pp. 570
    • Durand, J.1    Bodenes, C.2    Chancerel, E.3    Frigerio, J.M.4
  • 11
    • 34547168853 scopus 로고    scopus 로고
    • EST-SSRs as a resource for population genetic analyses
    • Ellis JR, Burke JM (2007). EST-SSRs as a resource for population genetic analyses. Hered 99: 125–132.
    • (2007) Hered , vol.99 , pp. 125-132
    • Ellis, J.R.1    Burke, J.M.2
  • 12
    • 0032742129 scopus 로고    scopus 로고
    • Large-scale statistical analyses of rice ESTs reveal correlated patterns of gene expression
    • Ewing RM, Kahla AB, Poirot O, Lopez F, Audic S, Claverie JM (1999). Large-scale statistical analyses of rice ESTs reveal correlated patterns of gene expression. Genome Res 9: 950–959.
    • (1999) Genome Res , vol.9 , pp. 950-959
    • Ewing, R.M.1    Kahla, A.B.2    Poirot, O.3    Lopez, F.4    Audic, S.5    Claverie, J.M.6
  • 13
    • 0347634449 scopus 로고    scopus 로고
    • Transferable EST-SSR markers for the study of polymorphism and genetic diversity in bread wheat
    • Gupta PK, Rustgi S, Sharma S, Singh R, Kumar N, Balyan HS (2003). Transferable EST-SSR markers for the study of polymorphism and genetic diversity in bread wheat. Mol Genet Genome 270: 315–323.
    • (2003) Mol Genet Genome , vol.270 , pp. 315-323
    • Gupta, P.K.1    Rustgi, S.2    Sharma, S.3    Singh, R.4    Kumar, N.5    Balyan, H.S.6
  • 14
    • 0034094869 scopus 로고    scopus 로고
    • The development and use of microsatellite markers for genetic analysis and plant breeding with emphasis on bread wheat
    • Gupta PK, Varshney RK (2000). The development and use of microsatellite markers for genetic analysis and plant breeding with emphasis on bread wheat. Euphyt 113: 163–185.
    • (2000) Euphyt , vol.113 , pp. 163-185
    • Gupta, P.K.1    Varshney, R.K.2
  • 15
    • 80155168368 scopus 로고    scopus 로고
    • Genetic relationships among some Stevia (Stevia rebaudiana Bertoni) accessions based on ISSR analysis
    • Heikal AH, Badawy OM, Afaf HM (2008). Genetic relationships among some Stevia (Stevia rebaudiana Bertoni) accessions based on ISSR analysis. Res J Cell Mol Biol 2: 1–5.
    • (2008) Res J Cell Mol Biol , vol.2 , pp. 1-5
    • Heikal, A.H.1    Badawy, O.M.2    Afaf, H.M.3
  • 16
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • Huang X, Madan A (1999). CAP3: A DNA sequence assembly program. Genome Res 9: 868–877.
    • (1999) Genome Res , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 21
    • 0001856330 scopus 로고
    • Wagner H, Hikino H, Farnsworth NR editors. Economic and medicinal plant research. New York, NY, USA: Academic Press
    • Kinghorn AD, Soejarto DD (1985). Current status of stevioside as a sweetening agent for human use. In: Wagner H, Hikino H, Farnsworth NR editors. Economic and medicinal plant research. New York, NY, USA: Academic Press, pp. 1–52.
    • (1985) Current Status of Stevioside as a Sweetening Agent for Human Use , pp. 1-52
    • Kinghorn, A.D.1    Soejarto, D.D.2
  • 22
    • 78751641803 scopus 로고    scopus 로고
    • EST-derived SSR markers in Jatropha curcas L. Development, characterization, polymorphism, and transferability across the species/genera
    • Kumar YH, Ranjan A, Asif MH, Mantri S (2011). EST-derived SSR markers in Jatropha curcas L. development, characterization, polymorphism, and transferability across the species/genera. Tree Genet Genomes 7: 207–219.
    • (2011) Tree Genet Genomes , vol.7 , pp. 207-219
    • Kumar, Y.H.1    Ranjan, A.2    Asif, M.H.3    Mantri, S.4
  • 23
    • 77957233724 scopus 로고    scopus 로고
    • Development, characterization, validation, and mapping of SSRs derived from Theobroma cacao L. - Moniliophthora perniciosa interaction ESTs
    • Lima LS, Gramacho KP, Pires JL, Clement D (2010). Development, characterization, validation, and mapping of SSRs derived from Theobroma cacao L. - Moniliophthora perniciosa interaction ESTs. Tree Genet Genomes 6: 663–676.
    • (2010) Tree Genet Genomes , vol.6 , pp. 663-676
    • Lima, L.S.1    Gramacho, K.P.2    Pires, J.L.3    Clement, D.4
  • 24
    • 23944440157 scopus 로고    scopus 로고
    • A wheat intervarietal linkage map based on microsatellite and target region amplified polymorphism markers and its utility for detecting quantitative trait loci
    • Liu ZH, Anderson JA, Hu J, Friesen TL (2005). A wheat intervarietal linkage map based on microsatellite and target region amplified polymorphism markers and its utility for detecting quantitative trait loci. Theor Appl Genet 111: 782–794.
    • (2005) Theor Appl Genet , vol.111 , pp. 782-794
    • Liu, Z.H.1    Erson, J.A.2    Hu, J.3    Friesen, T.L.4
  • 26
    • 33644989191 scopus 로고    scopus 로고
    • Potential application of TRAP (Targeted region amplified polymorphism) markers for mapping and tagging disease resistance traits in common bean
    • Miklas PN, Hu J, Grunwald NJ, Larsen KM (2006). Potential application of TRAP (targeted region amplified polymorphism) markers for mapping and tagging disease resistance traits in common bean. Crop Sci 46: 910–916.
    • (2006) Crop Sci , vol.46 , pp. 910-916
    • Miklas, P.N.1    Hu, J.2    Grunwald, N.J.3    Larsen, K.M.4
  • 27
    • 0036006342 scopus 로고    scopus 로고
    • A generalized heterozygote deficiency assessed with microsatellites in French common ash populations
    • Morand ME, Brachet S, Rossignol P, Dufour J, Frascaria-Lacoste N (2002). A generalized heterozygote deficiency assessed with microsatellites in French common ash populations. Mol Ecol 11: 377–385.
    • (2002) Mol Ecol , vol.11 , pp. 377-385
    • Morand, M.E.1    Brachet, S.2    Rossignol, P.3    Dufour, J.4    Frascaria-Lacoste, N.5
  • 28
    • 33748101548 scopus 로고    scopus 로고
    • EST databases as a source for molecular markers: Lessons from Helianthus
    • Pashley CH, Ellis JR, McCauley DE, Burke JM (2006). EST databases as a source for molecular markers: lessons from Helianthus. J Hered 97: 381–388.
    • (2006) J Hered , vol.97 , pp. 381-388
    • Pashley, C.H.1    Ellis, J.R.2    McCauley, D.E.3    Burke, J.M.4
  • 29
    • 11144273819 scopus 로고    scopus 로고
    • Survey in the sugarcane expressed sequence tag database (SUCEST) for simple sequence repeats
    • Pinto LR, Oliveira KM, Ulian EC, Garcia AAF, de Souza AP (2004). Survey in the sugarcane expressed sequence tag database (SUCEST) for simple sequence repeats. Genome 47: 795–804.
    • (2004) Genome , vol.47 , pp. 795-804
    • Pinto, L.R.1    Oliveira, K.M.2    Ulian, E.C.3    Garcia, A.4    De Souza, A.P.5
  • 30
    • 0033790691 scopus 로고    scopus 로고
    • Development of simple sequence repeats (SSRs) in olive tree (Olea europaea L.)
    • Rallo P, Dorado G, Martin A (2000). Development of simple sequence repeats (SSRs) in olive tree (Olea europaea L.). Theor Appl Genet 101: 984−989.
    • (2000) Theor Appl Genet , vol.101 , pp. 989
    • Rallo, P.1    Dorado, G.2    Martin, A.3
  • 31
    • 12744278046 scopus 로고    scopus 로고
    • Functional genomics uncovers three glucosyltransferases involved in the synthesis of the major sweet glucosides of Stevia rebaudiana
    • Richman A, Swanson A, Humphrey T, Chapman R, McGarvey B, Pocs R, Brandle JE (2005). Functional genomics uncovers three glucosyltransferases involved in the synthesis of the major sweet glucosides of Stevia rebaudiana. Plant J 41: 56–67.
    • (2005) Plant J , vol.41 , pp. 56-67
    • Richman, A.1    Swanson, A.2    Humphrey, T.3    Chapman, R.4    McGarvey, B.5    Pocs, R.6    Brandle, J.E.7
  • 33
    • 12244291895 scopus 로고    scopus 로고
    • Comparative analyses of potato expressed sequence tag libraries
    • Ronning C, Stegalkina S, Ascenzi R (2003). Comparative analyses of potato expressed sequence tag libraries. Plant Physiol 131: 419–429.
    • (2003) Plant Physiol , vol.131 , pp. 419-429
    • Ronning, C.1    Stegalkina, S.2    Ascenzi, R.3
  • 36
    • 0037176729 scopus 로고    scopus 로고
    • Rebaudioside-E, a diterpene glycoside from Stevia rebaudiana
    • Starratt AN, Kirby CW, Pocs R, Brandle JE (2002). Rebaudioside-E, a diterpene glycoside from Stevia rebaudiana. Phytochem 59: 367–370.
    • (2002) Phytochem , vol.59 , pp. 367-370
    • Starratt, A.N.1    Kirby, C.W.2    Pocs, R.3    Brandle, J.E.4
  • 37
    • 0034882994 scopus 로고    scopus 로고
    • Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): Frequency, length variation, transposon associations, and genetic marker potential
    • Temnykh S, Declerk G, Lukashova A, Lipovich L, Cartinhour S, Mccouch SR (2001). Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential. Genome Res 11: 1441–1452.
    • (2001) Genome Res , vol.11 , pp. 1441-1452
    • Temnykh, S.1    Declerk, G.2    Lukashova, A.3    Lipovich, L.4    Cartinhour, S.5    McCouch, S.R.6
  • 38
    • 84856318500 scopus 로고    scopus 로고
    • Datamining of ESTs to develop dbEST-SSR for use in polymorphism study of cauliflower (Brassica oleracea var. Botrytis)
    • Vaidya E, Kaur R, Bhardwaj SV (2012). Datamining of ESTs to develop dbEST-SSR for use in polymorphism study of cauliflower (Brassica oleracea var. botrytis). J Hortic Sci Biotechnol 87: 57–63.
    • (2012) J Hortic Sci Biotechnol , vol.87 , pp. 57-63
    • Vaidya, E.1    Kaur, R.2    Bhardwaj, S.V.3
  • 40
    • 77953431001 scopus 로고    scopus 로고
    • Development of EST-SSRs in watermelon (Citrullus lanatus var. Lanatus) and their transferability to Cucumis spp
    • Verma M, Arya L (2008). Development of EST-SSRs in watermelon (Citrullus lanatus var. lanatus) and their transferability to Cucumis spp. J Hortic Sci Biotechnol 83: 732–736.
    • (2008) J Hortic Sci Biotechnol , vol.83 , pp. 732-736
    • Verma, M.1    Arya, L.2
  • 41
    • 0031062308 scopus 로고    scopus 로고
    • Molecular characterization of GATA/ GACA microsatellite repeats in tomato
    • Vosman B, Arens P (1997). Molecular characterization of GATA/ GACA microsatellite repeats in tomato. Genome 40: 25−33.
    • (1997) Genome , vol.40 , pp. 33
    • Vosman, B.1    Arens, P.2
  • 42
    • 84878351920 scopus 로고    scopus 로고
    • Genetic evaluation of Andrographis paniculata (Burm. F.) Nees revealed by SSR, AFLP and RAPD markers
    • Wijarat P, Keeratinijakal V, Toojinda T, Vanavichit A, Tragoonrung S (2012). Genetic evaluation of Andrographis paniculata (Burm. f.) Nees revealed by SSR, AFLP and RAPD markers. J Med Plants Res 6: 2777–2788.
    • (2012) J Med Plants Res , vol.6 , pp. 2777-2788
    • Wijarat, P.1    Keeratinijakal, V.2    Toojinda, T.3    Vanavichit, A.4    Tragoonrung, S.5
  • 43
    • 52449091755 scopus 로고    scopus 로고
    • Identification, characterisation and mapping of simple sequence repeat (SSR) markers from raspberry root and bud ESTs
    • Woodhead M, McCallum S, Smith K, Cardle L, Mazzitelli L, Graham J (2008). Identification, characterisation and mapping of simple sequence repeat (SSR) markers from raspberry root and bud ESTs. Mol Breed 22: 555–563.
    • (2008) Mol Breed , vol.22 , pp. 555-563
    • Woodhead, M.1    McCallum, S.2    Smith, K.3    Cardle, L.4    Mazzitelli, L.5    Graham, J.6
  • 44
    • 0033369695 scopus 로고    scopus 로고
    • A genetic linkage map for Stevia rebaudiana
    • Yao Y, Ban M, Brandle J (1999). A genetic linkage map for Stevia rebaudiana. Genome 42: 657–661.
    • (1999) Genome , vol.42 , pp. 657-661
    • Yao, Y.1    Ban, M.2    Brandle, J.3
  • 45
    • 33751207081 scopus 로고    scopus 로고
    • Exploitation of pepper EST-SSRs and an SSR-based linkage map
    • Yi G, Lee JM, Lee S, Choi D, Kim BD (2006). Exploitation of pepper EST-SSRs and an SSR-based linkage map. Theor Appl Genet 114: 113–130.
    • (2006) Theor Appl Genet , vol.114 , pp. 113-130
    • Yi, G.1    Lee, J.M.2    Lee, S.3    Choi, D.4    Kim, B.D.5
  • 46
    • 0036007439 scopus 로고    scopus 로고
    • Strategies for microsatellite isolation: A review
    • Zane L, Bargelloni L, Patarnello T (2002). Strategies for microsatellite isolation: a review. Mol Ecol 11: 1–16.
    • (2002) Mol Ecol , vol.11 , pp. 1-16
    • Zane, L.1    Bargelloni, L.2    Patarnello, T.3
  • 47
    • 0242457370 scopus 로고    scopus 로고
    • Genetic diversity in recent elite faba bean lines using AFLP markers
    • Zeid M, Schon C, Link W (2003). Genetic diversity in recent elite faba bean lines using AFLP markers. Theor Appl Genet 107: 1304–1314.
    • (2003) Theor Appl Genet , vol.107 , pp. 1304-1314
    • Zeid, M.1    Schon, C.2    Link, W.3
  • 48
    • 77649112643 scopus 로고    scopus 로고
    • Development of a EST dataset and characterization of ESTSSRs in a traditional Chinese medicinal plant, Epimedium sagittatum (Sieb. Et Zucc.) Maxim
    • Zeng S, Xiao G, Guo J, Fei Z, Xu Y, Roe BA, Wang Y (2010). Development of a EST dataset and characterization of ESTSSRs in a traditional Chinese medicinal plant, Epimedium sagittatum (Sieb. Et Zucc.) Maxim. BMC Genomics 11: 94.
    • (2010) BMC Genomics , vol.11 , pp. 94
    • Zeng, S.1    Xiao, G.2    Guo, J.3    Fei, Z.4    Xu, Y.5    Roe, B.A.6    Wang, Y.7
  • 49
    • 84930460794 scopus 로고    scopus 로고
    • Analysis of SSRs information and development of SSR markers from walnut ESTs
    • Zhu Y, Hao Y, Wang K, Wu C, Wang W, Qi J, Zhou J (2009). Analysis of SSRs information and development of SSR markers from walnut ESTs. J Fruit Sci 26: 394–398.
    • (2009) J Fruit Sci , vol.26 , pp. 394-398
    • Zhu, Y.1    Hao, Y.2    Wang, K.3    Wu, C.4    Wang, W.5    Qi, J.6    Zhou, J.7


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