메뉴 건너뛰기




Volumn 9, Issue 10, 1999, Pages 950-959

Large-scale statistical analyses of rice ESTs reveal correlated patterns of gene expression

Author keywords

[No Author keywords available]

Indexed keywords

PLANT DNA;

EID: 0032742129     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.9.10.950     Document Type: Article
Times cited : (199)

References (64)
  • 1
    • 0029845634 scopus 로고    scopus 로고
    • Toward the development of a gene index to the human genome: An assessment of the nature of high-throughput EST sequence data
    • Aaronson, J., B. Eckman, R. Blevins, J. Borkowski, J. Myerson, S. Imran, and K. Elliston. 1996. Toward the development of a gene index to the human genome: An assessment of the nature of high-throughput EST sequence data. Genome Res. 6: 829-845.
    • (1996) Genome Res. , vol.6 , pp. 829-845
    • Aaronson, J.1    Eckman, B.2    Blevins, R.3    Borkowski, J.4    Myerson, J.5    Imran, S.6    Elliston, K.7
  • 5
    • 0030895921 scopus 로고    scopus 로고
    • A comparison of selected mRNA and protein abundances in human liver
    • Anderson L. and J. Seilhamer. 1997. A comparison of selected mRNA and protein abundances in human liver. Electrophoresis 18: 533-537.
    • (1997) Electrophoresis , vol.18 , pp. 533-537
    • Anderson, L.1    Seilhamer, J.2
  • 6
    • 0002739086 scopus 로고
    • On the origin of angiosperms
    • Arber, E. and J. Parkin. 1907. On the origin of angiosperms. J. Linnean Soc. 38: 29-80.
    • (1907) J. Linnean Soc. , vol.38 , pp. 29-80
    • Arber, E.1    Parkin, J.2
  • 7
    • 0030681260 scopus 로고    scopus 로고
    • The significance of digital gene expression profiles
    • Audic, S. and J.-M. Claverie. 1997. The significance of digital gene expression profiles. Genome Res. 7: 986-995.
    • (1997) Genome Res. , vol.7 , pp. 986-995
    • Audic, S.1    Claverie, J.-M.2
  • 9
    • 0027249595 scopus 로고
    • DbEST - Database for "expressed sequence tags"
    • Boguski, M.S., T.M.J. Lowe, and C.M. Tolstoshev. 1993. DbEST - database for "expressed sequence tags". Nat. Genet. 4: 332-333
    • (1993) Nat. Genet. , vol.4 , pp. 332-333
    • Boguski, M.S.1    Lowe, T.M.J.2    Tolstoshev, C.M.3
  • 10
    • 0027518011 scopus 로고
    • Control of flower development in Arabidopsis thaliana by apetala 1 and interacting genes
    • Bowman, J., J. Alvarez, D. Weigel, E. Meyerowitz, and D. Smyth. 1993. Control of flower development in Arabidopsis thaliana by apetala 1 and interacting genes. Development 119: 721-743.
    • (1993) Development , vol.119 , pp. 721-743
    • Bowman, J.1    Alvarez, J.2    Weigel, D.3    Meyerowitz, E.4    Smyth, D.5
  • 11
    • 0031453678 scopus 로고    scopus 로고
    • Understanding gene and allele function with two-hybrid methods
    • Brent, R. and R.L. Finley. 1997. Understanding gene and allele function with two-hybrid methods. Annu. Rev. Genet. 31: 663-704.
    • (1997) Annu. Rev. Genet. , vol.31 , pp. 663-704
    • Brent, R.1    Finley, R.L.2
  • 12
    • 84984932472 scopus 로고    scopus 로고
    • Exploring the new world of the genome with DNA microarrays
    • Brown, P.O. and D. Botstein. 1999. Exploring the new world of the genome with DNA microarrays. Nat. Genet. 21: 33-37.
    • (1999) Nat. Genet. , vol.21 , pp. 33-37
    • Brown, P.O.1    Botstein, D.2
  • 13
    • 0031955117 scopus 로고    scopus 로고
    • Alternative gene form discovery and candidate gene selection from gene indexing projects
    • Burke, J., H. Wang, W. Hide, and D.B. Davison. 1998. Alternative gene form discovery and candidate gene selection from gene indexing projects. Genome Res. 8: 276-290.
    • (1998) Genome Res. , vol.8 , pp. 276-290
    • Burke, J.1    Wang, H.2    Hide, W.3    Davison, D.B.4
  • 15
    • 0009301946 scopus 로고    scopus 로고
    • Exploring the vast territory of uncharted ESTs
    • Chapter 4, Academic Press
    • Claverie, J.-M. 1996. Exploring the vast territory of uncharted ESTs. In Genomes, molecular biology and drug discovery. Chapter 4, pp. 56-71. Academic Press,
    • (1996) Genomes, Molecular Biology and Drug Discovery , pp. 56-71
    • Claverie, J.-M.1
  • 17
    • 0030943471 scopus 로고    scopus 로고
    • The Arabidopsis thaliana cDNA sequencing projects
    • Delseny, M., R. Cooke, and M. Raynal. 1997. The Arabidopsis thaliana cDNA sequencing projects. FEBS Lett. 405: 129-132.
    • (1997) FEBS Lett. , vol.405 , pp. 129-132
    • Delseny, M.1    Cooke, R.2    Raynal, M.3
  • 19
    • 0030669030 scopus 로고    scopus 로고
    • Exploring the metabolic and genetic control of gene expression on a genomic scale
    • DeRisi, J.L., V.R. Iyer, and P.O. Brown. 1997. Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 278: 680-686.
    • (1997) Science , vol.278 , pp. 680-686
    • DeRisi, J.L.1    Iyer, V.R.2    Brown, P.O.3
  • 20
    • 0032103217 scopus 로고    scopus 로고
    • Differential gene expression in Arabidopsis monitored using cDNA arrays
    • Desprez, T., J. Amselem, M. Caboche, and H. Hofte. 1998. Differential gene expression in Arabidopsis monitored using cDNA arrays. Plant J. 14: 643-652.
    • (1998) Plant J. , vol.14 , pp. 643-652
    • Desprez, T.1    Amselem, J.2    Caboche, M.3    Hofte, H.4
  • 21
    • 0033534773 scopus 로고    scopus 로고
    • Serial analysis of gene expression to assess the endothelial cell response to an atherogenic stimulus
    • de Waard, V., B.M.M. Berg, J. Veken, R. Heienbrok, H. Pannekoek, and A.J. Zonneveld. 1999. Serial analysis of gene expression to assess the endothelial cell response to an atherogenic stimulus. Gene 226: 1-8.
    • (1999) Gene , vol.226 , pp. 1-8
    • De Waard, V.1    Berg, B.M.M.2    Veken, J.3    Heienbrok, R.4    Pannekoek, H.5    Zonneveld, A.J.6
  • 22
    • 0032125381 scopus 로고    scopus 로고
    • Transcriptional regulators and the evolution of plant form
    • Doebley, J. and L. Lukens. 1998. Transcriptional regulators and the evolution of plant form. Plant Cell 10: 1075-1082.
    • (1998) Plant Cell , vol.10 , pp. 1075-1082
    • Doebley, J.1    Lukens, L.2
  • 24
    • 0032441150 scopus 로고    scopus 로고
    • Cluster analysis and display of genome-wide expression patterns
    • Eisen, M., P. Spellman, P. Brown, and D. Botstein. 1998. Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad. Sci. 95: 14863-14868.
    • (1998) Proc. Natl. Acad. Sci. , vol.95 , pp. 14863-14868
    • Eisen, M.1    Spellman, P.2    Brown, P.3    Botstein, D.4
  • 25
    • 0033302113 scopus 로고    scopus 로고
    • Comparative analysis of the Arabidopsis and rice expressed sequence tag (EST) sets
    • Ewing, R., O. Poirot, and J.-M. Claverie. 1999. Comparative analysis of the Arabidopsis and rice expressed sequence tag (EST) sets. In Silico Biol. 1: 18 [http://www.bioinfo.de/isb/1999/o1/0018]
    • (1999) Silico Biol. , vol.1 , pp. 18
    • Ewing, R.1    Poirot, O.2    Claverie, J.-M.3
  • 26
    • 0031897867 scopus 로고    scopus 로고
    • Differential expression of insulin-like growth factor binding proteins in high versus low Gleason score prostate cancer
    • Figueroa, J.A., S. Raad, L. Tadlock, V.O. Speights, and J.J. Rinehart. 1998. Differential expression of insulin-like growth factor binding proteins in high versus low Gleason score prostate cancer. J. Urol. 159: 1379-1383.
    • (1998) J. Urol. , vol.159 , pp. 1379-1383
    • Figueroa, J.A.1    Raad, S.2    Tadlock, L.3    Speights, V.O.4    Rinehart, J.J.5
  • 27
    • 0031859991 scopus 로고    scopus 로고
    • Alternative polyadenylation in human mRNAs: A large-scale analysis by EST clustering
    • Gautheret, D., O. Poirot, F. Lopez, S. Audic, and J.-M. Claverie. 1998. Alternative polyadenylation in human mRNAs: A large-scale analysis by EST clustering. Genome Res. 8: 524-530.
    • (1998) Genome Res. , vol.8 , pp. 524-530
    • Gautheret, D.1    Poirot, O.2    Lopez, F.3    Audic, S.4    Claverie, J.-M.5
  • 28
    • 0032946556 scopus 로고    scopus 로고
    • Detecting selective expression of genes and proteins
    • Greller, L.D. and F.L. Tobin. 1999. Detecting selective expression of genes and proteins. Genome Res. 9: 282-296.
    • (1999) Genome Res. , vol.9 , pp. 282-296
    • Greller, L.D.1    Tobin, F.L.2
  • 36
    • 0031839516 scopus 로고    scopus 로고
    • Differential gene expression in response to adjunctive recombinant human interleukin-2 immunotherapy in multidrug-resistant tuberculosis patients
    • Johnson, B.J., I. Estrada, Z. Shen, S. Ress, P. Willcox, M.J. Colston, and G. Kaplan. 1998. Differential gene expression in response to adjunctive recombinant human interleukin-2 immunotherapy in multidrug-resistant tuberculosis patients. Infect. Immun. 66: 2426-2423.
    • (1998) Infect. Immun. , vol.66 , pp. 2426-12423
    • Johnson, B.J.1    Estrada, I.2    Shen, Z.3    Ress, S.4    Willcox, P.5    Colston, M.J.6    Kaplan, G.7
  • 37
    • 0028177080 scopus 로고
    • A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates
    • Kuhner, M.K. and J. Felsenstein. 1994. A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates. Mol. Biol. Evol. 11: 459-468.
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 459-468
    • Kuhner, M.K.1    Felsenstein, J.2
  • 40
    • 0029411112 scopus 로고
    • Analysis of randomly isolated cDNAs from developing endosperm of rice (Oryza sativa): Evaluation of expressed sequence tags, and expression levels of mRNAs
    • Liu, L., C. Hara, M. Umeda, Y. Zhao, T. Okita, and H. Uchimiya. 1995. Analysis of randomly isolated cDNAs from developing endosperm of rice (Oryza sativa): Evaluation of expressed sequence tags, and expression levels of mRNAs. Plant Mol. Biol. 29: 685-689.
    • (1995) Plant Mol. Biol. , vol.29 , pp. 685-689
    • Liu, L.1    Hara, C.2    Umeda, M.3    Zhao, Y.4    Okita, T.5    Uchimiya, H.6
  • 41
  • 43
    • 0026947554 scopus 로고
    • Large scale cDNA sequencing for analysis of quantitative and qualitative aspects of gene expression
    • Okubo, K., N. Hori, R. Matoba, T. Niiyama, A. Fukushima, Y. Kojima, and K. Matsubara. 1992. Large scale cDNA sequencing for analysis of quantitative and qualitative aspects of gene expression. Nat. Genet. 2: 173-179.
    • (1992) Nat. Genet. , vol.2 , pp. 173-179
    • Okubo, K.1    Hori, N.2    Matoba, R.3    Niiyama, T.4    Fukushima, A.5    Kojima, Y.6    Matsubara, K.7
  • 44
    • 0344337765 scopus 로고
    • Construction of a uniform-abundance (normalised) cDNA library
    • Patanjali, S.R., S. Parimoo, and S.M. Weisman. 1991. Construction of a uniform-abundance (normalised) cDNA library. Proc. Natl. Acad. Sci. 85: 2444-2448.
    • (1991) Proc. Natl. Acad. Sci. , vol.85 , pp. 2444-2448
    • Patanjali, S.R.1    Parimoo, S.2    Weisman, S.M.3
  • 45
    • 0029853148 scopus 로고    scopus 로고
    • WWW-query: An online retrieval system for biological sequence banks
    • Perriere, G. and M. Gouy. 1996. WWW-query: An online retrieval system for biological sequence banks. Biochimie 78: 364-369.
    • (1996) Biochimie , vol.78 , pp. 364-369
    • Perriere, G.1    Gouy, M.2
  • 46
    • 0030338878 scopus 로고    scopus 로고
    • Rice cDNAs as a model for expressed genes of plants
    • Sasaki, T. 1996. Rice cDNAs as a model for expressed genes of plants. Symp. Soc. Exp. Biol. 50: 11-15.
    • (1996) Symp. Soc. Exp. Biol. , vol.50 , pp. 11-15
    • Sasaki, T.1
  • 47
    • 0001360986 scopus 로고
    • Periclinal chimeras in Datura stramonium in relation to development of leaf and flower
    • Satina, S. and A. Blakeslee. 1941. Periclinal chimeras in Datura stramonium in relation to development of leaf and flower. Am J. Bot. 28: 862-871.
    • (1941) Am J. Bot. , vol.28 , pp. 862-871
    • Satina, S.1    Blakeslee, A.2
  • 48
    • 0028806048 scopus 로고
    • Quantitative monitoring of gene expression patterns with a complementary DNA microarray
    • Schena, M., D. Shalon, R.W. Davis, and P.O. Brown. 1995. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270: 467-470.
    • (1995) Science , vol.270 , pp. 467-470
    • Schena, M.1    Shalon, D.2    Davis, R.W.3    Brown, P.O.4
  • 49
    • 0029748326 scopus 로고    scopus 로고
    • Parallel human genome analysis: Microarray-based expression monitoring of 1000 genes
    • Schena, M., D. Shalon, R. Heller, A. Chai, P. Brown, and R. Davis. 1996. Parallel human genome analysis: Microarray-based expression monitoring of 1000 genes. Proc. Natl. Acad. Sci. 93: 10614-10619.
    • (1996) Proc. Natl. Acad. Sci. , vol.93 , pp. 10614-10619
    • Schena, M.1    Shalon, D.2    Heller, R.3    Chai, A.4    Brown, P.5    Davis, R.6
  • 51
    • 0000825481 scopus 로고
    • A statistical method for evaluating systematic relationships
    • Sokal, R. and C. Michener. 1958. A statistical method for evaluating systematic relationships. Univ. Kansas Sci. Bull. 28: 1409-1438.
    • (1958) Univ. Kansas Sci. Bull. , vol.28 , pp. 1409-1438
    • Sokal, R.1    Michener, C.2
  • 53
    • 0031917364 scopus 로고    scopus 로고
    • Isolation of genes identified in mouse renal proximal tubule by comparing different gene expression profiles
    • Takenaka, M., E. Imai, T. Kaneko, T. Ito, T. Moriyama, A. Yamauchi, M. Hori, S. Kawamoto, and K. Okubo. 1998. Isolation of genes identified in mouse renal proximal tubule by comparing different gene expression profiles. Kidney Int. 53: 562-572.
    • (1998) Kidney Int. , vol.53 , pp. 562-572
    • Takenaka, M.1    Imai, E.2    Kaneko, T.3    Ito, T.4    Moriyama, T.5    Yamauchi, A.6    Hori, M.7    Kawamoto, S.8    Okubo, K.9
  • 55
    • 0028445313 scopus 로고
    • Expressed sequence tags from cultured-cells of rice (Oryza sativa) under stressed conditions - Analysis of transcripts of genes engaged in ATP-generating pathways
    • Umeda, M., C. Hara, Y. Matsubayashi, H. Li, Q. Liu, F. Tadokoro, S. Aotsuka, and H. Uchimiya. 1994. Expressed sequence tags from cultured-cells of rice (Oryza sativa) under stressed conditions - analysis of transcripts of genes engaged in ATP-generating pathways. Plant Mol. Biol. 25: 469-478.
    • (1994) Plant Mol. Biol. , vol.25 , pp. 469-478
    • Umeda, M.1    Hara, C.2    Matsubayashi, Y.3    Li, H.4    Liu, Q.5    Tadokoro, F.6    Aotsuka, S.7    Uchimiya, H.8
  • 62
    • 0030753285 scopus 로고    scopus 로고
    • A comparison of expressed sequence tags (ESTs) to human genomic sequences
    • Wolfsberg, T. and D. Landsman. 1997. A comparison of expressed sequence tags (ESTs) to human genomic sequences. Nucleic Acids Res. 25: 1626-1632.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 1626-1632
    • Wolfsberg, T.1    Landsman, D.2
  • 63
    • 0031239046 scopus 로고    scopus 로고
    • Large scale EST sequencing in rice
    • Yamamoto, K. and T. Sasaki. 1997. Large scale EST sequencing in rice. Plant Mol. Biol. 35: 135-144.
    • (1997) Plant Mol. Biol. , vol.35 , pp. 135-144
    • Yamamoto, K.1    Sasaki, T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.