Genetic diversity in recent elite faba bean lines using AFLP markers

Theoretical and Applied Genetics

Volumn 107, Issue 7, 2003, Pages 1304-1314

  Zeid, Mahmoud ^a   Schön, Chris Carolin ^b   Link, Wolfgang ^a  

^a UNIVERSITY OF GÖTTINGEN   (Germany)

^b UNIVERSITY OF HOHENHEIM   (Germany)

Author keywords

AFLP; Bootstrap; Genetic diversity; Similarity coefficients; Vicia faba

Indexed keywords

BIODIVERSITY; BIOMARKERS; CULTIVATION; GELS; GENES;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM (AFLP); GENETIC DIVERSITY;

PLANTS (BOTANY);

DNA, PLANT; GENETIC MARKERS; INBREEDING; PHYLOGENY; POLYMORPHISM, GENETIC; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE; VARIATION (GENETICS); VICIA FABA;

EMBRYOPHYTA; PHASEOLUS (ANGIOSPERM); VICIA; VICIA FABA;

EID: 0242457370     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-003-1350-9     Document Type: Article

References (42)

1. Ajmone Marsan P, Negrini R, Crepalde P, Milanesi E, Gorni C, Valentini A, Cicogna M (2001) Assessing genetic diversity in Italian goat populations using AFLP markers. Int Soc Animal Genet 32:281-288
2. Becker HC, Engquvist GM, Karlsson B (1995) Comparison of rapeseed cultivars and re-synthesized lines based on allozyme and RFLP markers. Theor Appl Genet 91:62-67
3. Bond DA (1976) Field bean, Vicia faba. In: Simmonds NW (ed) Evolution of crop plants. Longman, London, pp 179-182
4. Castiglioni P, Ajmone Marsan P, van Wijk R (1999) AFLP markers in a molecular linkage map of maize: codominant scoring and linkage group distribution. Theor Appl Genet 99:425-431
5. Cubero JI (1974) On the evolution of Vicia faba L. Theor Appl Genet 45:47-51
6. Doyle JJ, Doyle JL (1990) Isolation of plant DNA from fresh tissue. Focus 12:13-15
7. Efron B, Tibshirani R (1986) Bootstrap methods for standard errors, confidence intervals, and other measures of statistical accuracy. Stat Sci 1:54-77
8. Ellis RP, Mc Nicol JW, Baird E, Booth A, Lawrence P, Thomas B, Powell W (1997) The use of AFLPs to examine genetic relatedness in barley. Mol Breed 3:359-369
9. Engqvist GM, Becker HC (1994) Genetic diversity for allozymes, RFLPs and RAPDs in re-synthesied rape. In: van Ooijen JW, Jansen J (eds) Biometrics in plant breeding: application of molecular markers. Proc 9th meeting of the EUCARPIA Section Biometrics in Plant Breeding, 6-8 July 1994, Wageningen, pp 85-90
10. Excoffier L (1994) The statistical analysis of molecular data for inferring population genetic structure: the AMOVA framework. In: Perrin N, Keller L, Goudet J (eds) Evolution of structured populations. Bull Soc Vaud Sci Natl 83:159-160
11. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
12. Finkeldey R (1994) A simple derivation of the partitioning of genetic differentiation within subdivided populations. Theor Appl Genet 89:198-200
13. Gower JC (1966) Some distance properties of latent root and vector methods used in multivariate analysis. Biometrika 53:325-338
14. Hanelt P (1972) Die infraspezifische Variabilität von Vicia faba L. und ihre Gliederung. Die Kulturpflanze 20:75-128
15. Hansen M, Kraft T, Christiansson M, Nilsson NO (1999) Evaluation of AFLP in Beta. Theor Appl Genet 98:845-852
16. Jaccard P (1908) Nouvelles researches sur la distribution florale. Bull Soc Vaud Sci Natl 44:223-270
17. Jones CJ, Edwards KJ, Castaglione S, Winfield MO, Sala F, van de Wiel C, Bredemeijer G, Vosman B, Matthes M, Daly A, Brettschneider R, Bettini P, Buiatti M, Maestri E, Malcevschi A, Marmiroli N, Aert R, Volckaert G, Rueda J, Linacero R, Vazquez A, Karp A (1997) Reproducibility testing of RAPD, AFLP and SSR markers in plants by a network of European laboratories. Mol Breed 3:381-390
18. Käser HR, Steiner AM (1983) Subspecific classification of Vicia faba L. by protein and isozyme patterns. Fabis Newslett 7:19-20
19. Lamboy W (1994) Computing genetic similarity coefficients from RAPD data: the effects of PCR artefacts. PCR Methods Appl 4:31-37
20. Lawes DA, Bond DA, Poulsen MH (1983) Classification, origin, breeding methods and objectives. In: Hebblethwaite PD (ed) The faba bean (Vicia faba L.). A basis for improvement. Butterworths, London, England, pp 23-67
21. Link W, Dixkens C, Singh M, Schwall M, Melchinger AE (1995) Genetic diversity in European and Mediterranean faba bean germplasm revealed by RAPD markers. Theor Appl Genet 90:27-32
22. Lübberstedt T, Melchinger AE, Dußle C, Vuylsteke M, Kuiper M (2000) Relationships among early European maize inbreds. IV. Genetic diversity revealed with AFLP markers and comparison with RFLP, RAPD and pedigree data. Crop Sci 40:783-791
23. Messmer MM, Melchinger AE, Boppenmaier J, Brunklaus-Jung E, Herrmann RG (1992) Relationships among early European maize (Zea mays L.) inbreds. I. Genetic diversity among flint and dent lines revealed by RFLPs. Crop Sci 32:1301-1309
24. Muratova V (1931) Common beans, Vicia faba L. Suppl Bull Appl Bot Genet Plant Breed, Leningrad
25. Nei M, Li WH (1979) Mathematical models for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci USA 76:5269-5273
26. Piepho HP, Laidig F (1997) A review of methods for cluster analysis of marker data. UPOV document BMT/47/7. UPOV, Genf
27. Robinson J, Harris SA (1999) Which DNA marker for which purpose? In: Gillet EM (ed) Final compendium of the research project development, optimisation and validation of molecular tools for assessment of biodiversity in forest trees in the European Union. DGXII Biotechnology FW IV-Research Programme of Molecular Tools for Biodiversity
28. Rohlf FJ (1993) NTSYS-PC. Numerical taxonomy and multivariate analysis system. Exeter Software, New York
29. Rohlf FJ (2000) NTSYS-pc. Numerical taxonomy and multivariate analysis system Exeter Software, New York
30. Satovic Z, Torres AM, Cubero JI (1996) Genetic mapping of new morphological, isozyme and RAPD markers in Vicia faba L. using trisomics. Theor Appl Genet 93:1130-1138
31. Schwarz G, Herz M, Huang XQ, Michalek W, Jahoor A, Wenzel G, Mohler V (2000) Application of fluorescence-based semi-automated AFLP analysis in barley and wheat. Theor Appl Genet 100:545-551
32. Smith JSC, Smith OS (1992) Fingerprinting crop varieties. Adv Agron 47:85-140
33. Sneath PH, Sokal RR (1973) Numerical taxonomy. WH Freeman and Company, San Francisco, USA
34. Sokal RR, Rohlf J (1981) Biometry. WH Freeman and Company, New York, USA
35. Stelling D, von Kittlitz E, Ebmeyer E, Sass O, Jaiser H, Link W (1994) Erfolge und Perspektiven der züchterischen Verbesserung von Körnererbsen und Ackerbohnen in der EU. Bericht über die 45. Arbeitstagung der Arbeitsgemeinschaft der Saatzuchtleiter im Rahmen der "Vereinigung österreischer Pflanzenzüchter", BAL Gumpenstein, Nov 1994, pp 22-24
36. Tao ZX (1981) Faba bean production and research in China. FABIS 3:24-25
37. Tivang JG, Nienhuis J, Smith OS (1994) Estimation of sampling variance of molecular-marker data using the bootstrap procedure. Theor Appl Genet 89:259-264
38. Vos P, Hogers R, Bleeker M, van de Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23:4407-4414
39. Winfield MO, Arnold GM, Cooper F, Le Ray M, White J, Karp A, Edwards KJ (1998) A study of genetic diversity in Populus nigra subsp. betulifolia in the Upper Severn area of the UK using AFLP markers. Mol Ecol 7:3-10
40. Yamamoto K (1973) Karyotaxonomical studies on Vicia. 1. On the karyotype and character of some annual species of Vicia. Jpn J Genet 48:315-327
41. Yap IV, Nelson RJ (1996) WINBOOT: a program for performing bootstrap analysis of binary data to determine the confidence limits of UPGMA-based dendrograms. IRRI Disc Paper Ser 14
42. Zeid M, Schön CC, Link W (2001) Genetic diversity in a group of recent elite faba bean lines. Czech J Genet Plant Breed 37:34-40