Molecular characterization of GATA/GACA microsatellite repeats in tomato

Genome

Volumn 40, Issue 1, 1997, Pages 25-33

  Vosman, B ^a   Arens, P ^a  

^a WAGENINGEN UNIVERSITY   (Netherlands)

Author keywords

Cultivar identification; Lycopersicon esculentum; Repetitive DNA; Simple sequence repeats

Indexed keywords

DNA STRUCTURE; MICROSATELLITE DNA; OLIGONUCLEOTIDE PROBE; PLANT GENOME; POINT MUTATION; REPETITIVE DNA;

EMBRYOPHYTA; LILIUM HENRYI; LYCOPERSICON ESCULENTUM; SOLANUM TUBEROSUM;

EID: 0031062308     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/g97-004     Document Type: Article

References (22)

1. Aggarwal, R.K., Majumdar, K.C., Lang, J.W., and Singh, L. 1994. Generic affinities among crocodilians as revealed by DNA fingerprinting with a Bkm-derived probe. Proc. Natl. Acad. Sci. U.S.A. 91: 10 601-10 605.
2. Arens, P., Odinot, P., van Heusden, A.W., Lindhout, P., and Vosman, B. 1995. GATA and GACA repeats are not evenly distributed throughout the tomato genome. Genome, 38: 84-90.
3. Broun, P., and Tanksley, S.D. 1996. Characterization and genetic mapping of simple repeat sequences in the tomato genome. Mol. Gen. Genet. 250: 39-49.
4. Del, Sal G., Manfioletti, G., and Schneider, C. 1988. A one-tube plasmid DNA mini-preparation suitable for sequencing. Nucleic Acids Res. 16: 9878.
5. Erickson, R.P., Ross, C.E., Gorski, J.L., Stalvey, J.R.D., and Drumm, M.M. 1988. Bkm sequences from the human X chromosome contain large clusters of GATA/GACA repeats. Ann. Hum. Genet. 52: 167-176.
6. Hamada, H., Petrino, M.G., and Kakunaga, T. 1982. A novel repeated element with Z-DNA-forming potential is widely found in evolutionarily diverse eukaryotic genomes. Proc. Natl. Acad. Sci. U.S.A. 79: 6465-6469.
7. Ji, H., Moore, D.P., Blomberg, M.A., Braiterman, L.T., Voytas, D.F., Natsoulis, G., and Boeke, J.D. 1993. Hotspots for unselected Ty1 transposition events on yeast chromosome III are near tRNA genes and LTR sequences. Cell, 73: 1007-1018.
8. Kaemmer, D., Weising, K., Beyermann, B., Börner, T., Epplen, J.T., and Kahl, G. 1995. Oligonucleotide fingerprinting of tomato DNA. Plant Breed. 114: 12-17.
9. Nap, J.P., Dirkse, W.G., Louwerse, J., Onstenk, J., Visser, R., Loonen, A., Heidekamp, F., and Stiekema, W.J. 1992. Analysis of the region in between two closely linked patatin genes: class II promoter activity in tuber, root and leaf. Plant. Mol. Biol. 20: 683-694.
10. Phillips, W.J., Chapman, C.G.D., and Jack, P.L. 1994. Molecular cloning and analysis of one member of a polymorphic family of GACA-hybridizing DNA repeats in tomato. Theor. Appl. Genet. 88: 845-851.
11. ™ DNA sequencing system. Technical manual.
12. Sambrook, J., Fritsch, E.F., and Maniatis, T. 1989. Molecular cloning: a laboratory manual. 2nd Ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
13. Schlötterer, C., and Tautz, D. 1992. Slippage synthesis of simple sequence DNA. Nucleic Acids Res. 20: 211-215.
14. n sequences in Drosophila melanogaster. Genome. 33: 750-754.
15. Singh, L., Phillips, C., and Jones, K.W. 1984. The conserved nucleotide sequences of Bkm, which define Sxr in the mouse, are transcribed. Cell, 36: 111-120.
16. Smyth, D.R., Kalitsis, P., Joseph, J.L., and Sentry, J.W. 1989. Plant retrotransposon from Lilium henryi is related to Ty3 of yeast and the gypsy group of Drosophila. Proc. Natl. Acad. Sci. U.S.A. 86: 5015-5019.
17. Tanksley, S.D., Ganal, M.W., Prince, J.P., Devicente, M.C., Bonierbale, M.W., Broun, P., Fulton, T.M., Giovannoni, J.J., Grandillo, S., Martin, G.B., Messeguer, R., Miller, J.C., Miller, L., Paterson, A.H., Pineda, O., Röder, M.S., Wing, R.A., Wu, W., and Young, N.D. 1992. High density molecular linkage maps of the tomato and potato genomes. Genetics, 132: 1141-1160.
18. Tautz, D., and Renz, M. 1984. Simple sequences are ubiquitous repetitive components of eukaryotic genomes. Nucleic Acids Res. 12: 4127-4138.
19. Traut, W. 1987. Hypervariable Bkm DNA loci in moth, Ephestia kuelniella: does transposition cause restriction fragment length polymorphism? Genetics, 115: 493-498.
20. Vosman, B., Arens, P., Rus-Kortekaas, W., and Smulders, M.J.M. 1992. Identification of highly polymorphic DNA regions in tomato. Theor. Appl. Genet. 85: 239-244.
21. Weising, K., Nybom, H., Wolff, K., and Meyer, W. 1995. DNA finger-printing in plants and fungi. CRC Press, Boca Raton, Fla.
22. Yanisch-Perron, C., Vieira, J., and Messing, J. 1985. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene, 33: 103-119.