메뉴 건너뛰기




Volumn 11, Issue 4, 2015, Pages

Host Genetic Variation Influences Gene Expression Response to Rhinovirus Infection

Author keywords

[No Author keywords available]

Indexed keywords

GLUTATHIONE TRANSFERASE M3; INTERFERON REGULATORY FACTOR 5; STAT2 PROTEIN; 2',5' OLIGOADENYLATE SYNTHETASE; ALPHA2 INTEGRIN; GLUTATHIONE TRANSFERASE; GSTM3 PROTEIN, HUMAN; INTERFERON REGULATORY FACTOR; IRF5 PROTEIN, HUMAN; ITGA2B PROTEIN, HUMAN; MSR1 PROTEIN, HUMAN; OAS1 PROTEIN, HUMAN; SCAVENGER RECEPTOR A; STAT2 PROTEIN, HUMAN; TRANSCRIPTOME;

EID: 84930336482     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1005111     Document Type: Article
Times cited : (52)

References (54)
  • 1
    • 1842292104 scopus 로고    scopus 로고
    • Frequency and natural history of rhinovirus infections in adults during autumn
    • Arruda E, Pitkaranta A, Witek TJ, Jr.Doyle CA, Hayden FG, (1997) Frequency and natural history of rhinovirus infections in adults during autumn. J Clin Microbiol 35: 2864–2868. 9350748
    • (1997) J Clin Microbiol , vol.35 , pp. 2864-2868
    • Arruda, E.1    Pitkaranta, A.2    Witek, T.J.3    Doyle, C.A.4    Hayden, F.G.5
  • 3
    • 0016669801 scopus 로고
    • The Seattle virus watch. V. Epidemiologic observations of rhinovirus infections, 1965–1969, in families with young children
    • Fox JP, Cooney MK, Hall CE, (1975) The Seattle virus watch. V. Epidemiologic observations of rhinovirus infections, 1965–1969, in families with young children. Am J Epidemiol 101: 122–143. 164769
    • (1975) Am J Epidemiol , vol.101 , pp. 122-143
    • Fox, J.P.1    Cooney, M.K.2    Hall, C.E.3
  • 4
    • 33645902896 scopus 로고    scopus 로고
    • Picornavirus infections in children diagnosed by RT-PCR during longitudinal surveillance with weekly sampling: Association with symptomatic illness and effect of season
    • Winther B, Hayden FG, Hendley JO, (2006) Picornavirus infections in children diagnosed by RT-PCR during longitudinal surveillance with weekly sampling: Association with symptomatic illness and effect of season. J Med Virol 78: 644–650. 16555289
    • (2006) J Med Virol , vol.78 , pp. 644-650
    • Winther, B.1    Hayden, F.G.2    Hendley, J.O.3
  • 5
    • 79960620797 scopus 로고    scopus 로고
    • Rhinovirus infections in the upper airway
    • Winther B, (2011) Rhinovirus infections in the upper airway. Proc Am Thorac Soc 8: 79–89. doi: 10.1513/pats.201006-039RN 21364225
    • (2011) Proc Am Thorac Soc , vol.8 , pp. 79-89
    • Winther, B.1
  • 6
    • 77954524570 scopus 로고    scopus 로고
    • The ABCs of rhinoviruses, wheezing, and asthma
    • Gern JE, (2010) The ABCs of rhinoviruses, wheezing, and asthma. J Virol 84: 7418–7426. doi: 10.1128/JVI.02290-09 20375160
    • (2010) J Virol , vol.84 , pp. 7418-7426
    • Gern, J.E.1
  • 7
    • 42149093868 scopus 로고    scopus 로고
    • IL-10 gene polymorphism at -1082 A/G is associated with severe rhinovirus bronchiolitis in infants
    • Helminen M, Nuolivirta K, Virta M, Halkosalo A, Korppi M, et al. (2008) IL-10 gene polymorphism at -1082 A/G is associated with severe rhinovirus bronchiolitis in infants. Pediatr Pulmonol 43: 391–395. doi: 10.1002/ppul.20793 18286551
    • (2008) Pediatr Pulmonol , vol.43 , pp. 391-395
    • Helminen, M.1    Nuolivirta, K.2    Virta, M.3    Halkosalo, A.4    Korppi, M.5
  • 8
    • 84875932548 scopus 로고    scopus 로고
    • Rhinovirus wheezing illness and genetic risk of childhood-onset asthma
    • Caliskan M, Bochkov YA, Kreiner-Moller E, Bonnelykke K, Stein MM, et al. (2013) Rhinovirus wheezing illness and genetic risk of childhood-onset asthma. N Engl J Med 368: 1398–1407. doi: 10.1056/NEJMoa1211592 23534543
    • (2013) N Engl J Med , vol.368 , pp. 1398-1407
    • Caliskan, M.1    Bochkov, Y.A.2    Kreiner-Moller, E.3    Bonnelykke, K.4    Stein, M.M.5
  • 9
    • 53049100006 scopus 로고    scopus 로고
    • Host immune responses to rhinovirus: mechanisms in asthma
    • Kelly JT, Busse WW, (2008) Host immune responses to rhinovirus: mechanisms in asthma. J Allergy Clin Immunol 122: 671–682; quiz 683–674. doi: 10.1016/j.jaci.2008.08.013 19014757
    • (2008) J Allergy Clin Immunol , vol.122 , pp. 671-682
    • Kelly, J.T.1    Busse, W.W.2
  • 10
    • 77249119309 scopus 로고    scopus 로고
    • Rhinovirus-induced modulation of gene expression in bronchial epithelial cells from subjects with asthma
    • Bochkov YA, Hanson KM, Keles S, Brockman-Schneider RA, Jarjour NN, et al. (2010) Rhinovirus-induced modulation of gene expression in bronchial epithelial cells from subjects with asthma. Mucosal Immunol 3: 69–80. doi: 10.1038/mi.2009.109 19710636
    • (2010) Mucosal Immunol , vol.3 , pp. 69-80
    • Bochkov, Y.A.1    Hanson, K.M.2    Keles, S.3    Brockman-Schneider, R.A.4    Jarjour, N.N.5
  • 11
    • 32044440119 scopus 로고    scopus 로고
    • Rhinovirus induces airway epithelial gene expression through double-stranded RNA and IFN-dependent pathways
    • Chen Y, Hamati E, Lee PK, Lee WM, Wachi S, et al. (2006) Rhinovirus induces airway epithelial gene expression through double-stranded RNA and IFN-dependent pathways. Am J Respir Cell Mol Biol 34: 192–203. 16210696
    • (2006) Am J Respir Cell Mol Biol , vol.34 , pp. 192-203
    • Chen, Y.1    Hamati, E.2    Lee, P.K.3    Lee, W.M.4    Wachi, S.5
  • 12
    • 55549094831 scopus 로고    scopus 로고
    • Gene expression profiles during in vivo human rhinovirus infection: insights into the host response
    • Proud D, Turner RB, Winther B, Wiehler S, Tiesman JP, et al. (2008) Gene expression profiles during in vivo human rhinovirus infection: insights into the host response. Am J Respir Crit Care Med 178: 962–968. doi: 10.1164/rccm.200805-670OC 18658112
    • (2008) Am J Respir Crit Care Med , vol.178 , pp. 962-968
    • Proud, D.1    Turner, R.B.2    Winther, B.3    Wiehler, S.4    Tiesman, J.P.5
  • 13
    • 84959804774 scopus 로고
    • Localization of human rhinovirus replication in the upper respiratory tract by in situ hybridization
    • Arruda E, Boyle TR, Winther B, Pevear DC, Gwaltney JM, Jr.et al. (1995) Localization of human rhinovirus replication in the upper respiratory tract by in situ hybridization. J Infect Dis 171: 1329–1333. 7751712
    • (1995) J Infect Dis , vol.171 , pp. 1329-1333
    • Arruda, E.1    Boyle, T.R.2    Winther, B.3    Pevear, D.C.4    Gwaltney, J.M.5
  • 14
    • 79953738807 scopus 로고    scopus 로고
    • Human rhinovirus C—associated severe pneumonia in a neonate
    • Broberg E, Niemela J, Lahti E, Hyypia T, Ruuskanen O, et al. (2011) Human rhinovirus C—associated severe pneumonia in a neonate. J Clin Virol 51: 79–82. doi: 10.1016/j.jcv.2011.01.018 21342784
    • (2011) J Clin Virol , vol.51 , pp. 79-82
    • Broberg, E.1    Niemela, J.2    Lahti, E.3    Hyypia, T.4    Ruuskanen, O.5
  • 15
    • 80555154308 scopus 로고    scopus 로고
    • Detection of human rhinovirus C viral genome in blood among children with severe respiratory infections in the Philippines
    • Fuji N, Suzuki A, Lupisan S, Sombrero L, Galang H, et al. (2011) Detection of human rhinovirus C viral genome in blood among children with severe respiratory infections in the Philippines. PLoS One 6: e27247. doi: 10.1371/journal.pone.0027247 22087272
    • (2011) PLoS One , vol.6 , pp. e27247
    • Fuji, N.1    Suzuki, A.2    Lupisan, S.3    Sombrero, L.4    Galang, H.5
  • 17
    • 0030586559 scopus 로고    scopus 로고
    • Rhinovirus produces nonspecific activation of lymphocytes through a monocyte-dependent mechanism
    • Gern JE, Vrtis R, Kelly EA, Dick EC, Busse WW, (1996) Rhinovirus produces nonspecific activation of lymphocytes through a monocyte-dependent mechanism. J Immunol 157: 1605–1612. 8759745
    • (1996) J Immunol , vol.157 , pp. 1605-1612
    • Gern, J.E.1    Vrtis, R.2    Kelly, E.A.3    Dick, E.C.4    Busse, W.W.5
  • 18
    • 0038043469 scopus 로고    scopus 로고
    • Rhinovirus and asthma
    • Yamaya M, Sasaki H, (2003) Rhinovirus and asthma. Viral Immunol 16: 99–109. 12828863
    • (2003) Viral Immunol , vol.16 , pp. 99-109
    • Yamaya, M.1    Sasaki, H.2
  • 19
    • 58149502576 scopus 로고    scopus 로고
    • Mice lacking the ISG15 E1 enzyme UbE1L demonstrate increased susceptibility to both mouse-adapted and non-mouse-adapted influenza B virus infection
    • Lai C, Struckhoff JJ, Schneider J, Martinez-Sobrido L, Wolff T, et al. (2009) Mice lacking the ISG15 E1 enzyme UbE1L demonstrate increased susceptibility to both mouse-adapted and non-mouse-adapted influenza B virus infection. J Virol 83: 1147–1151. doi: 10.1128/JVI.00105-08 19004958
    • (2009) J Virol , vol.83 , pp. 1147-1151
    • Lai, C.1    Struckhoff, J.J.2    Schneider, J.3    Martinez-Sobrido, L.4    Wolff, T.5
  • 20
    • 0035253852 scopus 로고    scopus 로고
    • Influenza B virus NS1 protein inhibits conjugation of the interferon (IFN)-induced ubiquitin-like ISG15 protein
    • Yuan W, Krug RM, (2001) Influenza B virus NS1 protein inhibits conjugation of the interferon (IFN)-induced ubiquitin-like ISG15 protein. EMBO J 20: 362–371. 11157743
    • (2001) EMBO J , vol.20 , pp. 362-371
    • Yuan, W.1    Krug, R.M.2
  • 21
    • 26844496280 scopus 로고    scopus 로고
    • A transcriptional signaling pathway in the IFN system mediated by 2'-5'-oligoadenylate activation of RNase L
    • Malathi K, Paranjape JM, Bulanova E, Shim M, Guenther-Johnson JM, et al. (2005) A transcriptional signaling pathway in the IFN system mediated by 2'-5'-oligoadenylate activation of RNase L. Proc Natl Acad Sci U S A 102: 14533–14538. 16203993
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 14533-14538
    • Malathi, K.1    Paranjape, J.M.2    Bulanova, E.3    Shim, M.4    Guenther-Johnson, J.M.5
  • 22
    • 36348987303 scopus 로고    scopus 로고
    • Viral encounters with 2',5'-oligoadenylate synthetase and RNase L during the interferon antiviral response
    • Silverman RH, (2007) Viral encounters with 2',5'-oligoadenylate synthetase and RNase L during the interferon antiviral response. J Virol 81: 12720–12729. 17804500
    • (2007) J Virol , vol.81 , pp. 12720-12729
    • Silverman, R.H.1
  • 23
    • 0035968246 scopus 로고    scopus 로고
    • Virus-specific activation of a novel interferon regulatory factor, IRF-5, results in the induction of distinct interferon alpha genes
    • Barnes BJ, Moore PA, Pitha PM, (2001) Virus-specific activation of a novel interferon regulatory factor, IRF-5, results in the induction of distinct interferon alpha genes. J Biol Chem 276: 23382–23390. 11303025
    • (2001) J Biol Chem , vol.276 , pp. 23382-23390
    • Barnes, B.J.1    Moore, P.A.2    Pitha, P.M.3
  • 26
    • 52749097463 scopus 로고    scopus 로고
    • ARG1 is a novel bronchodilator response gene: screening and replication in four asthma cohorts
    • Litonjua AA, Lasky-Su J, Schneiter K, Tantisira KG, Lazarus R, et al. (2008) ARG1 is a novel bronchodilator response gene: screening and replication in four asthma cohorts. Am J Respir Crit Care Med 178: 688–694. doi: 10.1164/rccm.200709-1363OC 18617639
    • (2008) Am J Respir Crit Care Med , vol.178 , pp. 688-694
    • Litonjua, A.A.1    Lasky-Su, J.2    Schneiter, K.3    Tantisira, K.G.4    Lazarus, R.5
  • 27
    • 77952888586 scopus 로고    scopus 로고
    • Association analysis of 3p21 with Crohn's disease in a New Zealand population
    • Morgan AR, Han DY, Lam WJ, Fraser AG, Ferguson LR, (2010) Association analysis of 3p21 with Crohn's disease in a New Zealand population. Hum Immunol 71: 602–609. doi: 10.1016/j.humimm.2010.03.003 20307617
    • (2010) Hum Immunol , vol.71 , pp. 602-609
    • Morgan, A.R.1    Han, D.Y.2    Lam, W.J.3    Fraser, A.G.4    Ferguson, L.R.5
  • 28
    • 13844292408 scopus 로고    scopus 로고
    • Polymorphisms in the tyrosine kinase 2 and interferon regulatory factor 5 genes are associated with systemic lupus erythematosus
    • Sigurdsson S, Nordmark G, Goring HH, Lindroos K, Wiman AC, et al. (2005) Polymorphisms in the tyrosine kinase 2 and interferon regulatory factor 5 genes are associated with systemic lupus erythematosus. Am J Hum Genet 76: 528–537. 15657875
    • (2005) Am J Hum Genet , vol.76 , pp. 528-537
    • Sigurdsson, S.1    Nordmark, G.2    Goring, H.H.3    Lindroos, K.4    Wiman, A.C.5
  • 29
    • 0036263947 scopus 로고    scopus 로고
    • N-Acetyltransferase genotypes as modifiers of diisocyanate exposure-associated asthma risk
    • Wikman H, Piirila P, Rosenberg C, Luukkonen R, Kaaria K, et al. (2002) N-Acetyltransferase genotypes as modifiers of diisocyanate exposure-associated asthma risk. Pharmacogenetics 12: 227–233. 11927838
    • (2002) Pharmacogenetics , vol.12 , pp. 227-233
    • Wikman, H.1    Piirila, P.2    Rosenberg, C.3    Luukkonen, R.4    Kaaria, K.5
  • 30
    • 44149087089 scopus 로고    scopus 로고
    • Genome-wide screen for asthma in Puerto Ricans: evidence for association with 5q23 region
    • Choudhry S, Taub M, Mei R, Rodriguez-Santana J, Rodriguez-Cintron W, et al. (2008) Genome-wide screen for asthma in Puerto Ricans: evidence for association with 5q23 region. Hum Genet 123: 455–468. doi: 10.1007/s00439-008-0495-7 18401594
    • (2008) Hum Genet , vol.123 , pp. 455-468
    • Choudhry, S.1    Taub, M.2    Mei, R.3    Rodriguez-Santana, J.4    Rodriguez-Cintron, W.5
  • 31
    • 34548475750 scopus 로고    scopus 로고
    • Genetic susceptibility to respiratory syncytial virus bronchiolitis is predominantly associated with innate immune genes
    • Janssen R, Bont L, Siezen CL, Hodemaekers HM, Ermers MJ, et al. (2007) Genetic susceptibility to respiratory syncytial virus bronchiolitis is predominantly associated with innate immune genes. J Infect Dis 196: 826–834. 17703412
    • (2007) J Infect Dis , vol.196 , pp. 826-834
    • Janssen, R.1    Bont, L.2    Siezen, C.L.3    Hodemaekers, H.M.4    Ermers, M.J.5
  • 32
    • 77951789159 scopus 로고    scopus 로고
    • COPD is associated with a macrophage scavenger receptor-1 gene sequence variation
    • Ohar JA, Hamilton RF, Jr.Zheng S, Sadeghnejad A, Sterling DA, et al. (2010) COPD is associated with a macrophage scavenger receptor-1 gene sequence variation. Chest 137: 1098–1107. doi: 10.1378/chest.09-1655 20081102
    • (2010) Chest , vol.137 , pp. 1098-1107
    • Ohar, J.A.1    Hamilton, R.F.2    Zheng, S.3    Sadeghnejad, A.4    Sterling, D.A.5
  • 33
    • 70349682910 scopus 로고    scopus 로고
    • A gene-based risk score for lung cancer susceptibility in smokers and ex-smokers
    • Young RP, Hopkins RJ, Hay BA, Epton MJ, Mills GD, et al. (2009) A gene-based risk score for lung cancer susceptibility in smokers and ex-smokers. Postgrad Med J 85: 515–524. doi: 10.1136/pgmj.2008.077107 19789190
    • (2009) Postgrad Med J , vol.85 , pp. 515-524
    • Young, R.P.1    Hopkins, R.J.2    Hay, B.A.3    Epton, M.J.4    Mills, G.D.5
  • 34
    • 2442591807 scopus 로고    scopus 로고
    • Glutathione-S-transferase M1, M3, P1 and T1 polymorphisms and severity of lung disease in children with cystic fibrosis
    • Flamant C, Henrion-Caude A, Boelle PY, Bremont F, Brouard J, et al. (2004) Glutathione-S-transferase M1, M3, P1 and T1 polymorphisms and severity of lung disease in children with cystic fibrosis. Pharmacogenetics 14: 295–301. 15115915
    • (2004) Pharmacogenetics , vol.14 , pp. 295-301
    • Flamant, C.1    Henrion-Caude, A.2    Boelle, P.Y.3    Bremont, F.4    Brouard, J.5
  • 35
    • 84896759364 scopus 로고    scopus 로고
    • Common genetic variants modulate pathogen-sensing responses in human dendritic cells
    • Lee MN, Ye C, Villani AC, Raj T, Li W, et al. (2014) Common genetic variants modulate pathogen-sensing responses in human dendritic cells. Science 343: 1246980. doi: 10.1126/science.1246980 24604203
    • (2014) Science , vol.343 , pp. 1246980
    • Lee, M.N.1    Ye, C.2    Villani, A.C.3    Raj, T.4    Li, W.5
  • 36
    • 79960967243 scopus 로고    scopus 로고
    • Interactions between glucocorticoid treatment and cis-regulatory polymorphisms contribute to cellular response phenotypes
    • Maranville JC, Luca F, Richards AL, Wen X, Witonsky DB, et al. (2011) Interactions between glucocorticoid treatment and cis-regulatory polymorphisms contribute to cellular response phenotypes. PLoS Genet 7: e1002162. doi: 10.1371/journal.pgen.1002162 21750684
    • (2011) PLoS Genet , vol.7 , pp. e1002162
    • Maranville, J.C.1    Luca, F.2    Richards, A.L.3    Wen, X.4    Witonsky, D.B.5
  • 37
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of DNA elements in the human genome
    • Consortium EP, Bernstein BE, Birney E, Dunham I, Green ED, et al. (2012) An integrated encyclopedia of DNA elements in the human genome. Nature 489: 57–74. doi: 10.1038/nature11247 22955616
    • (2012) Nature , vol.489 , pp. 57-74
    • Consortium, E.P.1    Bernstein, B.E.2    Birney, E.3    Dunham, I.4    Green, E.D.5
  • 38
    • 0034515268 scopus 로고    scopus 로고
    • Immune response in Stat2 knockout mice
    • Park C, Li S, Cha E, Schindler C, (2000) Immune response in Stat2 knockout mice. Immunity 13: 795–804. 11163195
    • (2000) Immunity , vol.13 , pp. 795-804
    • Park, C.1    Li, S.2    Cha, E.3    Schindler, C.4
  • 39
    • 67049159825 scopus 로고    scopus 로고
    • SHRiMP: accurate mapping of short color-space reads
    • Rumble SM, Lacroute P, Dalca AV, Fiume M, Sidow A, et al. (2009) SHRiMP: accurate mapping of short color-space reads. PLoS Comput Biol 5: e1000386. doi: 10.1371/journal.pcbi.1000386 19461883
    • (2009) PLoS Comput Biol , vol.5 , pp. e1000386
    • Rumble, S.M.1    Lacroute, P.2    Dalca, A.V.3    Fiume, M.4    Sidow, A.5
  • 40
    • 80052322958 scopus 로고    scopus 로고
    • Trans-eQTLs reveal that independent genetic variants associated with a complex phenotype converge on intermediate genes, with a major role for the HLA
    • Fehrmann RS, Jansen RC, Veldink JH, Westra HJ, Arends D, et al. (2011) Trans-eQTLs reveal that independent genetic variants associated with a complex phenotype converge on intermediate genes, with a major role for the HLA. PLoS Genet 7: e1002197. doi: 10.1371/journal.pgen.1002197 21829388
    • (2011) PLoS Genet , vol.7 , pp. e1002197
    • Fehrmann, R.S.1    Jansen, R.C.2    Veldink, J.H.3    Westra, H.J.4    Arends, D.5
  • 41
    • 84856387609 scopus 로고    scopus 로고
    • Deciphering the genetic architecture of variation in the immune response to Mycobacterium tuberculosis infection
    • Barreiro LB, Tailleux L, Pai AA, Gicquel B, Marioni JC, et al. (2012) Deciphering the genetic architecture of variation in the immune response to Mycobacterium tuberculosis infection. Proc Natl Acad Sci U S A 109: 1204–1209. doi: 10.1073/pnas.1115761109 22233810
    • (2012) Proc Natl Acad Sci U S A , vol.109 , pp. 1204-1209
    • Barreiro, L.B.1    Tailleux, L.2    Pai, A.A.3    Gicquel, B.4    Marioni, J.C.5
  • 42
    • 84867634945 scopus 로고    scopus 로고
    • Evidence for additive and interaction effects of host genotype and infection in malaria
    • Idaghdour Y, Quinlan J, Goulet JP, Berghout J, Gbeha E, et al. (2012) Evidence for additive and interaction effects of host genotype and infection in malaria. Proc Natl Acad Sci U S A 109: 16786–16793. doi: 10.1073/pnas.1204945109 22949651
    • (2012) Proc Natl Acad Sci U S A , vol.109 , pp. 16786-16793
    • Idaghdour, Y.1    Quinlan, J.2    Goulet, J.P.3    Berghout, J.4    Gbeha, E.5
  • 43
    • 84896742056 scopus 로고    scopus 로고
    • Innate immune activity conditions the effect of regulatory variants upon monocyte gene expression
    • Fairfax BP, Humburg P, Makino S, Naranbhai V, Wong D, et al. (2014) Innate immune activity conditions the effect of regulatory variants upon monocyte gene expression. Science 343: 1246949. doi: 10.1126/science.1246949 24604202
    • (2014) Science , vol.343 , pp. 1246949
    • Fairfax, B.P.1    Humburg, P.2    Makino, S.3    Naranbhai, V.4    Wong, D.5
  • 45
    • 69749099417 scopus 로고    scopus 로고
    • Fast model-based estimation of ancestry in unrelated individuals
    • Alexander DH, Novembre J, Lange K, (2009) Fast model-based estimation of ancestry in unrelated individuals. Genome Res 19: 1655–1664. doi: 10.1101/gr.094052.109 19648217
    • (2009) Genome Res , vol.19 , pp. 1655-1664
    • Alexander, D.H.1    Novembre, J.2    Lange, K.3
  • 46
    • 84856478855 scopus 로고    scopus 로고
    • A linear complexity phasing method for thousands of genomes
    • Delaneau O, Marchini J, Zagury JF, (2012) A linear complexity phasing method for thousands of genomes. Nat Methods 9: 179–181. doi: 10.1038/nmeth.1785 22138821
    • (2012) Nat Methods , vol.9 , pp. 179-181
    • Delaneau, O.1    Marchini, J.2    Zagury, J.F.3
  • 47
    • 67651222400 scopus 로고    scopus 로고
    • A flexible and accurate genotype imputation method for the next generation of genome-wide association studies
    • Howie BN, Donnelly P, Marchini J, (2009) A flexible and accurate genotype imputation method for the next generation of genome-wide association studies. PLoS Genet 5: e1000529. doi: 10.1371/journal.pgen.1000529 19543373
    • (2009) PLoS Genet , vol.5 , pp. e1000529
    • Howie, B.N.1    Donnelly, P.2    Marchini, J.3
  • 48
    • 46249088370 scopus 로고    scopus 로고
    • lumi: a pipeline for processing Illumina microarray
    • Du P, Kibbe WA, Lin SM, (2008) lumi: a pipeline for processing Illumina microarray. Bioinformatics 24: 1547–1548. doi: 10.1093/bioinformatics/btn224 18467348
    • (2008) Bioinformatics , vol.24 , pp. 1547-1548
    • Du, P.1    Kibbe, W.A.2    Lin, S.M.3
  • 49
    • 84859098571 scopus 로고    scopus 로고
    • The sva package for removing batch effects and other unwanted variation in high-throughput experiments
    • Leek JT, Johnson WE, Parker HS, Jaffe AE, Storey JD, (2012) The sva package for removing batch effects and other unwanted variation in high-throughput experiments. Bioinformatics 28: 882–883. doi: 10.1093/bioinformatics/bts034 22257669
    • (2012) Bioinformatics , vol.28 , pp. 882-883
    • Leek, J.T.1    Johnson, W.E.2    Parker, H.S.3    Jaffe, A.E.4    Storey, J.D.5
  • 50
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang da W, Sherman BT, Lempicki RA, (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4: 44–57. doi: 10.1038/nprot.2008.211 19131956
    • (2009) Nat Protoc , vol.4 , pp. 44-57
    • Huang da, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 51
    • 84861153094 scopus 로고    scopus 로고
    • Matrix eQTL: ultra fast eQTL analysis via large matrix operations
    • Shabalin AA, (2012) Matrix eQTL: ultra fast eQTL analysis via large matrix operations. Bioinformatics 28: 1353–1358. doi: 10.1093/bioinformatics/bts163 22492648
    • (2012) Bioinformatics , vol.28 , pp. 1353-1358
    • Shabalin, A.A.1
  • 52
    • 84930337867 scopus 로고    scopus 로고
    • Millstein J (2013) fdrci: Permutation-based FDR Point and Confidence Interval Estimation. R package version 20.
  • 53
    • 84858779229 scopus 로고    scopus 로고
    • HaploReg: a resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants
    • Ward LD, Kellis M, (2012) HaploReg: a resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants. Nucleic Acids Res 40: D930–934. doi: 10.1093/nar/gkr917 22064851
    • (2012) Nucleic Acids Res , vol.40 , pp. 930-934
    • Ward, L.D.1    Kellis, M.2
  • 54
    • 84930329248 scopus 로고    scopus 로고
    • SNPsnap: a Web-based tool for identification and annotation of matched SNPs
    • Pers TH, Timshel P, Hirschhorn JN (2014) SNPsnap: a Web-based tool for identification and annotation of matched SNPs. Bioinformatics.
    • (2014)
    • Pers, T.H.1    Timshel, P.2    Hirschhorn, J.N.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.