메뉴 건너뛰기




Volumn 5, Issue , 2015, Pages

Comprehensive DNA methylation analysis of hepatitis B virus genome in infected liver tissues

Author keywords

[No Author keywords available]

Indexed keywords

APC PROTEIN; APC PROTEIN, HUMAN; GLUTATHIONE TRANSFERASE P1; GSTP1 PROTEIN, HUMAN; RASSF1 PROTEIN, HUMAN; TUMOR SUPPRESSOR PROTEIN; VIRUS DNA;

EID: 84930227190     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep10478     Document Type: Article
Times cited : (41)

References (48)
  • 1
    • 79952231921 scopus 로고    scopus 로고
    • Management of hepatocellular carcinoma: An update
    • Bruix, J. & Sherman, M. Management of hepatocellular carcinoma: An update. Hepatology 53, 1020-1022 (2011).
    • (2011) Hepatology , vol.53 , pp. 1020-1022
    • Bruix, J.1    Sherman, M.2
  • 2
    • 84858658381 scopus 로고    scopus 로고
    • Management of hepatocellular carcinoma
    • European Association for the Study of the, L., European Organisation for, R. & Treatment of, C. EASL-EORTC Clinical Practice Guidelines: Management of hepatocellular carcinoma. J. Hepatol 56, 908-943 (2012).
    • (2012) J. Hepatol , vol.56 , pp. 908-943
  • 3
    • 70349240414 scopus 로고    scopus 로고
    • Chronic hepatitis B: Update 2009
    • Lok, A. S. F. & McMahon, B. J. Chronic hepatitis B: Update 2009. Hepatology 50, 661-662 (2009).
    • (2009) Hepatology , vol.50 , pp. 661-662
    • Lok, A.S.F.1    McMahon, B.J.2
  • 5
    • 84905387224 scopus 로고    scopus 로고
    • Fact sheet No. 204 Available at: (Accessed: 1st December 2015).
    • World Health Organization. Hepatitis B (Fact sheet No. 204). (2013) Available at: http://www.who.int/mediacentre/factsheets/fs204/en/. (Accessed: 1st December 2015).
    • (2013) Hepatitis B
    • World Health Organization1
  • 7
    • 84984549253 scopus 로고    scopus 로고
    • Basal core promoter mutations of hepatitis b virus increase the risk of hepatocellular carcinoma in hepatitis b carriers
    • Kao, J. H., Chen, P. J., Lai, M. Y. & Chen, D. S. Basal core promoter mutations of hepatitis B virus increase the risk of hepatocellular carcinoma in hepatitis B carriers. Gastroenterology 124, 327-334 (2003).
    • (2003) Gastroenterology , vol.124 , pp. 327-334
    • Kao, J.H.1    Chen, P.J.2    Lai, M.Y.3    Chen, D.S.4
  • 8
    • 34248635952 scopus 로고    scopus 로고
    • Hepatitis b virus (hbv) genotypes/subgenotypes in china: Mutations in core promoter and precore/core and their clinical implications
    • Yuan, J. et al. Hepatitis B virus (HBV) genotypes/subgenotypes in China: mutations in core promoter and precore/core and their clinical implications. J. Clin Virol. 39, 87-93 (2007).
    • (2007) J. Clin Virol. , vol.39 , pp. 87-93
    • Yuan, J.1
  • 9
    • 0032959493 scopus 로고    scopus 로고
    • Core promoter mutations and genotypes in relation to viral replication and liver damage in East Asian hepatitis B virus carriers
    • Lindh, M., Hannoun, C., Dhillon, A. P., Norkrans, G. & Horal, P. Core promoter mutations and genotypes in relation to viral replication and liver damage in East Asian hepatitis B virus carriers. J. Infect. Dis. 179, 775-782 (1999).
    • (1999) J. Infect. Dis. , vol.179 , pp. 775-782
    • Lindh, M.1    Hannoun, C.2    Dhillon, A.P.3    Norkrans, G.4    Horal, P.5
  • 10
    • 77958090656 scopus 로고    scopus 로고
    • A case-control study on sequence variations in the enhancer II/core promoter/precore and X genes of hepatitis B virus in patients with hepatocellular carcinoma
    • Tangkijvanich, P., Sa-nguanmoo, P., Mahachai, V., Theamboonlers, A. & Poovorawan, Y. A case-control study on sequence variations in the enhancer II/core promoter/precore and X genes of hepatitis B virus in patients with hepatocellular carcinoma. Hepatol. Int. 4, 577-584 (2010).
    • (2010) Hepatol. Int. , vol.4 , pp. 577-584
    • Tangkijvanich, P.1    Sa-Nguanmoo, P.2    Mahachai, V.3    Theamboonlers, A.4    Poovorawan, Y.5
  • 11
    • 0038384418 scopus 로고    scopus 로고
    • Influence of hepatitis B virus genotypes on the development of preS deletions and advanced liver disease
    • Sugauchi, F. et al. Influence of hepatitis B virus genotypes on the development of preS deletions and advanced liver disease. J. Med. Virol. 70, 537-544 (2003).
    • (2003) J. Med. Virol. , vol.70 , pp. 537-544
    • Sugauchi, F.1
  • 12
    • 56349099754 scopus 로고    scopus 로고
    • Hepatitis B virus pre-S deletion mutations are a risk factor for hepatocellular carcinoma: A matched nested case-control study
    • Fang, Z.-L. et al. Hepatitis B virus pre-S deletion mutations are a risk factor for hepatocellular carcinoma: a matched nested case-control study. J. Gen. Virol. 89, 2882-2890 (2008).
    • (2008) J. Gen. Virol. , vol.89 , pp. 2882-2890
    • Fang, Z.-L.1
  • 13
    • 35649014367 scopus 로고    scopus 로고
    • Pre-S deletion and complex mutations of hepatitis B virus related to advanced liver disease in HBeAg-negative patients
    • Chen, C. H. et al. Pre-S deletion and complex mutations of hepatitis B virus related to advanced liver disease in HBeAg-negative patients. Gastroenterology 133, 1466-1474 (2007).
    • (2007) Gastroenterology , vol.133 , pp. 1466-1474
    • Chen, C.H.1
  • 14
    • 68249152595 scopus 로고    scopus 로고
    • Associations between hepatitis B virus mutations and the risk of hepatocellular carcinoma: A meta-analysis
    • Liu, S. et al. Associations between hepatitis B virus mutations and the risk of hepatocellular carcinoma: a meta-analysis. J. Natl. Cancer Inst. 101, 1066-1082 (2009).
    • (2009) J. Natl. Cancer Inst. , vol.101 , pp. 1066-1082
    • Liu, S.1
  • 15
    • 61849085358 scopus 로고    scopus 로고
    • The dynamic DNA methylomes of double-stranded DNA viruses associated with human cancer
    • Fernandez, A. F. et al. The dynamic DNA methylomes of double-stranded DNA viruses associated with human cancer. Genome Res. 19, 438-451 (2009).
    • (2009) Genome Res. , vol.19 , pp. 438-451
    • Fernandez, A.F.1
  • 16
    • 77955693084 scopus 로고    scopus 로고
    • DNA Methylation of Hepatitis B Virus (HBV) Genome Associated with the Development of Hepatocellular Carcinoma and Occult HBV Infection
    • Kaur, P. et al. DNA Methylation of Hepatitis B Virus (HBV) Genome Associated with the Development of Hepatocellular Carcinoma and Occult HBV Infection. J. Infect. Dis. 202, 700-704 (2010).
    • (2010) J. Infect. Dis. , vol.202 , pp. 700-704
    • Kaur, P.1
  • 17
    • 37649007673 scopus 로고    scopus 로고
    • Hepatitis B viral DNA is methylated in liver tissues
    • Vivekanandan, P., Thomas, D. & Torbenson, M. Hepatitis B viral DNA is methylated in liver tissues. J. Viral. Hepat. 15, 103-107 (2008).
    • (2008) J. Viral. Hepat. , vol.15 , pp. 103-107
    • Vivekanandan, P.1    Thomas, D.2    Torbenson, M.3
  • 18
    • 1642580790 scopus 로고    scopus 로고
    • Hepatitis B virus genotypes: Comparison of genotyping methods
    • Bartholomeusz, A. & Schaefer, S. Hepatitis B virus genotypes: comparison of genotyping methods. Rev. Med. Virol. 14, 3-16 (2004).
    • (2004) Rev. Med. Virol. , vol.14 , pp. 3-16
    • Bartholomeusz, A.1    Schaefer, S.2
  • 19
    • 0027184227 scopus 로고
    • Hepatitis B virus: Significance of naturally occurring mutants
    • HE, B. Hepatitis B virus: significance of naturally occurring mutants. Intervirology 35, 40-50 (1993).
    • (1993) Intervirology , vol.35 , pp. 40-50
    • He, B.1
  • 20
    • 36649015602 scopus 로고    scopus 로고
    • Universal primers for HBV genome DNA amplification across subtypes: A case study for designing more effective viral primers
    • Zhang, Q., Wu, G., Richards, E., Jia, S. g. & Zeng, C. Universal primers for HBV genome DNA amplification across subtypes: a case study for designing more effective viral primers. Virol. J. 4, 92 (2007).
    • (2007) Virol. J. , vol.4 , pp. 92
    • Zhang, Q.1    Wu, G.2    Richards, E.3    Jia, S.G.4    Zeng, C.5
  • 21
    • 35548983363 scopus 로고    scopus 로고
    • Molecular virology of hepatitis b virus for clinicians
    • Block, T. M., Guo, H. & Guo, J.-T. Molecular Virology of Hepatitis B Virus for Clinicians. Clin. Liver. Dis. 11, 685-706 (2007).
    • (2007) Clin. Liver. Dis. , vol.11 , pp. 685-706
    • Block, T.M.1    Guo, H.2    Guo, J.-T.3
  • 22
    • 84874326995 scopus 로고    scopus 로고
    • Comparative analysis of cpg islands among hbv genotypes
    • Zhang, Y. et al. Comparative Analysis of CpG Islands among HBV Genotypes. PLoS ONE 8, e56711, doi:10.1371/journal. pone.0056711 (2013).
    • (2013) PLoS ONE , vol.8
    • Zhang, Y.1
  • 23
    • 0036380904 scopus 로고    scopus 로고
    • Regulatory elements of hepatitis b virus transcription
    • Moolla, N., Kew, M. & Arbuthnot, P. Regulatory elements of hepatitis B virus transcription. J. Viral. Hepat. 9, 323-331 (2002).
    • (2002) J. Viral. Hepat. , vol.9 , pp. 323-331
    • Moolla, N.1    Kew, M.2    Arbuthnot, P.3
  • 24
    • 80053994925 scopus 로고    scopus 로고
    • Replicative activity of hepatitis b virus is negatively associated with methylation of covalently closed circular dna in advanced hepatitis b virus infection
    • Kim, J. W. et al. Replicative Activity of Hepatitis B Virus Is Negatively Associated with Methylation of Covalently Closed Circular DNA in Advanced Hepatitis B Virus Infection. Intervirology 54, 316-325 (2011).
    • (2011) Intervirology , vol.54 , pp. 316-325
    • Kim, J.W.1
  • 25
    • 67649989072 scopus 로고    scopus 로고
    • Evidence that methylation of hepatitis b virus covalently closed circular dna in liver tissues of patients with chronic hepatitis b modulates hbv replication
    • Guo, Y., Li, Y., Mu, S., Zhang, J. & Yan, Z. Evidence that methylation of hepatitis B virus covalently closed circular DNA in liver tissues of patients with chronic hepatitis B modulates HBV replication. J Med Virol. 81, 1177-1183 (2009).
    • (2009) J Med Virol. , vol.81 , pp. 1177-1183
    • Guo, Y.1    Li, Y.2    Mu, S.3    Zhang, J.4    Yan, Z.5
  • 26
    • 84891166169 scopus 로고    scopus 로고
    • Regulation of hepatitis b virus replication by epigenetic mechanisms and micrornas
    • Zhang, X., Hou, J. & Lu, M. Regulation of Hepatitis B virus Replication by Epigenetic Mechanisms and MicroRNAs. Front Genet. 4, doi:10.3389/fgene.2013.00202 (2013).
    • (2013) Front Genet. , vol.4
    • Zhang, X.1    Hou, J.2    Lu, M.3
  • 27
    • 0029147933 scopus 로고
    • Characterization of cell lines established from human hepatocellular carcinoma
    • Park, J. G. et al. Characterization of cell lines established from human hepatocellular carcinoma. Int J Cancer. 62, 276-282 (1995).
    • (1995) Int J Cancer. , vol.62 , pp. 276-282
    • Park, J.G.1
  • 28
    • 0022535482 scopus 로고
    • Hepatitis B virus transcripts in a human hepatoma cell line, hep 3B
    • Su, T.-S. et al. Hepatitis B virus transcripts in a human hepatoma cell line, hep 3B. Biochem. Biophys. Res. Commun. 138, 131-138 (1986).
    • (1986) Biochem. Biophys. Res. Commun. , vol.138 , pp. 131-138
    • Su, T.-S.1
  • 29
    • 80355131962 scopus 로고    scopus 로고
    • Methylation of the CpG Sites only on the Sense Strand of the APC Gene is Specific for Hepatocellular Carcinoma
    • Jain, S. et al. Methylation of the CpG Sites Only on the Sense Strand of the APC Gene Is Specific for Hepatocellular Carcinoma. PLoS ONE 6, e26799, doi: 10.1371/journal.pone.0026799 (2011).
    • (2011) PLoS ONE , vol.6
    • Jain, S.1
  • 31
    • 84859942963 scopus 로고    scopus 로고
    • Impact of the Location of CpG Methylation within the GSTP1 Gene on Its Specificity as a DNA Marker for Hepatocellular Carcinoma
    • Jain, S. et al. Impact of the Location of CpG Methylation within the GSTP1 Gene on Its Specificity as a DNA Marker for Hepatocellular Carcinoma. PLoS ONE 7, e35789, doi:10.1371/journal.pone.0035789 (2012).
    • (2012) PLoS ONE , vol.7
    • Jain, S.1
  • 32
    • 67449090372 scopus 로고    scopus 로고
    • Methylation of multiple genes as molecular markers for diagnosis of a small, well-differentiated hepatocellular carcinoma
    • Moribe, T. et al. Methylation of multiple genes as molecular markers for diagnosis of a small, well-differentiated hepatocellular carcinoma. Int. J. Cancer 125, 388-397 (2009).
    • (2009) Int. J. Cancer , vol.125 , pp. 388-397
    • Moribe, T.1
  • 33
    • 52149102033 scopus 로고    scopus 로고
    • Methylation of tumor associated genes in tissue and plasma samples from liver disease patients
    • Chang, H. et al. Methylation of tumor associated genes in tissue and plasma samples from liver disease patients. Exp. Mol. Pathol. 85, 96-100 (2008).
    • (2008) Exp. Mol. Pathol. , vol.85 , pp. 96-100
    • Chang, H.1
  • 34
    • 0034625064 scopus 로고    scopus 로고
    • Non-CpG methylation is prevalent in embryonic stem cells and may be mediated by DNA methyltransferase 3a
    • Ramsahoye, B. H. et al. Non-CpG methylation is prevalent in embryonic stem cells and may be mediated by DNA methyltransferase 3a. Proc. Natl. Acad. Sci. U S A. 97, 5237-5242 (2000).
    • (2000) Proc. Natl. Acad. Sci. U S A. , vol.97 , pp. 5237-5242
    • Ramsahoye, B.H.1
  • 35
    • 84893740377 scopus 로고    scopus 로고
    • Distribution, recognition and regulation of non-CpG methylation in the adult mammalian brain
    • Guo, J. U. et al. Distribution, recognition and regulation of non-CpG methylation in the adult mammalian brain. Nat. Neurosci. 17, 215-222 (2014).
    • (2014) Nat. Neurosci. , vol.17 , pp. 215-222
    • Guo, J.U.1
  • 36
    • 84857331867 scopus 로고    scopus 로고
    • Base-resolution analyses of sequence and parent-of-origin dependent dna methylation in the mouse genome
    • Xie, W. et al. Base-Resolution Analyses of Sequence and Parent-of-Origin Dependent DNA Methylation in the Mouse Genome. Cell 148, 816-831 (2012).
    • (2012) Cell , vol.148 , pp. 816-831
    • Xie, W.1
  • 37
    • 84879663784 scopus 로고    scopus 로고
    • Global epigenomic reconfiguration during mammalian brain development
    • Lister, R. et al. Global Epigenomic Reconfiguration During Mammalian Brain Development. Science 341 (2013).
    • (2013) Science , vol.341
    • Lister, R.1
  • 38
    • 84891766375 scopus 로고    scopus 로고
    • Differences in dna methylation between human neuronal and glial cells are concentrated in enhancers and non-cpg sites
    • Kozlenkov, A. et al. Differences in DNA methylation between human neuronal and glial cells are concentrated in enhancers and non-CpG sites. Nucleic Acids Res. 42, 109-127 (2014).
    • (2014) Nucleic Acids Res. , vol.42 , pp. 109-127
    • Kozlenkov, A.1
  • 39
    • 84874624739 scopus 로고    scopus 로고
    • Dynamic dna methylation across diverse human cell lines and tissues
    • Varley, K. E. et al. Dynamic DNA methylation across diverse human cell lines and tissues. Genome Res. 23, 555-567 (2013).
    • (2013) Genome Res. , vol.23 , pp. 555-567
    • Varley, K.E.1
  • 40
    • 13644267108 scopus 로고    scopus 로고
    • Transcriptional silencing is associated with extensive methylation of the cmv promoter following adenoviral gene delivery to muscle
    • Brooks, A. R. et al. Transcriptional silencing is associated with extensive methylation of the CMV promoter following adenoviral gene delivery to muscle. J. Gene. Med. 6, 395-404 (2004).
    • (2004) J. Gene. Med. , vol.6 , pp. 395-404
    • Brooks, A.R.1
  • 41
    • 0036572179 scopus 로고    scopus 로고
    • De novo methylation of mmlv provirus in embryonic stem cells: CPG versus non-cpg methylation
    • Dodge, J. E., Ramsahoye, B. H., Wo, Z. G., Okano, M. & Li, E. De novo methylation of MMLV provirus in embryonic stem cells: CpG versus non-CpG methylation. Gene. 289, 41-48 (2002).
    • (2002) Gene. , vol.289 , pp. 41-48
    • Dodge, J.E.1    Ramsahoye, B.H.2    Wo, Z.G.3    Okano, M.4    Li, E.5
  • 42
    • 0242661842 scopus 로고    scopus 로고
    • Methylation patterns of papillomavirus dna, its influence on e2 function, and implications in viral infection
    • Kim, K., Garner-Hamrick, P. A., Fisher C., Lee, D. & Lambert, P. F. Methylation Patterns of Papillomavirus DNA, Its Influence on E2 Function, and Implications in Viral Infection. J. Virol. 77, 12450-12459 (2003).
    • (2003) J. Virol. , vol.77 , pp. 12450-12459
    • Kim, K.1    Garner-Hamrick, P.A.2    Fisher, C.3    Lee, D.4    Lambert, P.F.5
  • 43
    • 8644243891 scopus 로고    scopus 로고
    • Conserved methylation patterns of human papillomavirus type 16 dna in asymptomatic infection and cervical neoplasia
    • Kalantari, M. et al. Conserved Methylation Patterns of Human Papillomavirus Type 16 DNA in Asymptomatic Infection and Cervical Neoplasia. J. Virol. 78, 12762-12772 (2004).
    • (2004) J. Virol. , vol.78 , pp. 12762-12772
    • Kalantari, M.1
  • 44
    • 84901796479 scopus 로고    scopus 로고
    • The evidence for functional non-cpg methylation in mammalian cells
    • Patil, V., Ward, R. L. & Hesson, L. B. The evidence for functional non-CpG methylation in mammalian cells. Epigenetics 9, 823-828 (2014).
    • (2014) Epigenetics , vol.9 , pp. 823-828
    • Patil, V.1    Ward, R.L.2    Hesson, L.B.3
  • 45
    • 3342946559 scopus 로고    scopus 로고
    • Genomic dna double-strand breaks are targets for hepadnaviral dna integration
    • Bill, C. A. & Summers, J. Genomic DNA double-strand breaks are targets for hepadnaviral DNA integration. Proc. Natl. Acad. Sci. U S A. 101, 11135-11140 (2004).
    • (2004) Proc. Natl. Acad. Sci. U S A. , vol.101 , pp. 11135-11140
    • Bill, C.A.1    Summers, J.2
  • 46
    • 84864378861 scopus 로고    scopus 로고
    • Identification of disubstituted sulfonamide compounds as specific inhibitors of hepatitis b virus covalently closed circular dna formation
    • Cai, D. et al. Identification of Disubstituted Sulfonamide Compounds as Specific Inhibitors of Hepatitis B Virus Covalently Closed Circular DNA Formation. Antimicrob Agents Chemother. 56, 4277-4288 (2012).
    • (2012) Antimicrob Agents Chemother. , vol.56 , pp. 4277-4288
    • Cai, D.1
  • 47
    • 82755191709 scopus 로고    scopus 로고
    • A locked nucleic acid clamp-mediated pcr assay for detection of a p53 codon 249 hotspot mutation in urine
    • Lin, S. Y. et al. A locked nucleic acid clamp-mediated PCR assay for detection of a p53 codon 249 hotspot mutation in urine. J. Mol. Diagn. 13, 474-484 (2011).
    • (2011) J. Mol. Diagn. , vol.13 , pp. 474-484
    • Lin, S.Y.1
  • 48
    • 84958847120 scopus 로고    scopus 로고
    • Differential methylation of the promoter and first exon of the rassf1a gene in hepatocarcinogenesis
    • Jain, S. et al. Differential methylation of the promoter and first exon of the RASSF1A gene in hepatocarcinogenesis. Hepatol Res. doi:10.1111/hepr.12449 (2014).
    • (2014) Hepatol Res.
    • Jain, S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.