-
1
-
-
37749032917
-
The genetics of adaptive shape shift in stickleback: pleiotropy and effect size
-
Albert AYK, Sawaya S, Vines TH, et al,. (2008) The genetics of adaptive shape shift in stickleback: pleiotropy and effect size. Evolution, 62, 76-85.
-
(2008)
Evolution
, vol.62
, pp. 76-85
-
-
Albert, A.Y.K.1
Sawaya, S.2
Vines, T.H.3
-
2
-
-
0002590589
-
Tetraploidy and the evolution of salmonid fishes
-
(ed. Tuner B.J.), Plenum Press, New York
-
Allendorf FW, Thorgaard GH, (1984) Tetraploidy and the evolution of salmonid fishes. In: Evolutionary Genetics of Fishes (ed., Tuner BJ,), pp. 1-53. Plenum Press, New York.
-
(1984)
Evolutionary Genetics of Fishes
, pp. 1-53
-
-
Allendorf, F.W.1
Thorgaard, G.H.2
-
3
-
-
0000433702
-
Conservation and genetics of salmonid fishes
-
(eds Avise J.C. Hamrick J.L.), Chapman and Hall, New York
-
Allendorf FW, Waples RS, (1996) Conservation and genetics of salmonid fishes. In: Conservation Genetics: Case Histories from Nature (eds, Avise JC, Hamrick JL,), pp. 238-239. Chapman and Hall, New York.
-
(1996)
Conservation Genetics: Case Histories from Nature
, pp. 238-239
-
-
Allendorf, F.W.1
Waples, R.S.2
-
4
-
-
71549151643
-
Oceanic, riverine, and genetic influences on spring chinook salmon migration timing
-
Anderson JJ, Beer WN, (2009) Oceanic, riverine, and genetic influences on spring chinook salmon migration timing. Ecological Applications, 19, 1989-2003.
-
(2009)
Ecological Applications
, vol.19
, pp. 1989-2003
-
-
Anderson, J.J.1
Beer, W.N.2
-
5
-
-
54449098752
-
Rapid SNP discovery and genetic mapping using sequenced RAD markers
-
Baird NA, Etter PD, Atwood TS, et al,. (2008) Rapid SNP discovery and genetic mapping using sequenced RAD markers. PLoS ONE, 3, e3376.
-
(2008)
PLoS ONE
, vol.3
-
-
Baird, N.A.1
Etter, P.D.2
Atwood, T.S.3
-
6
-
-
34247597511
-
Pacific Rim population structure of Chinook salmon as determined from microsatellite analysis
-
Beacham TD, Jonsen KL, Supernault J, et al,. (2006) Pacific Rim population structure of Chinook salmon as determined from microsatellite analysis. Transactions of the American Fisheries Society, 135, 1604-1621.
-
(2006)
Transactions of the American Fisheries Society
, vol.135
, pp. 1604-1621
-
-
Beacham, T.D.1
Jonsen, K.L.2
Supernault, J.3
-
7
-
-
84879612427
-
Contemporary evolution, allelic recycling, and adaptive radiation of the threespine stickleback
-
Bell MA, Aguirre WE, (2013) Contemporary evolution, allelic recycling, and adaptive radiation of the threespine stickleback. Evolutionary Ecology Research, 15, 377-411.
-
(2013)
Evolutionary Ecology Research
, vol.15
, pp. 377-411
-
-
Bell, M.A.1
Aguirre, W.E.2
-
8
-
-
84899099281
-
The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates
-
Berthelot C, Brunet F, Chalopin D, et al,. (2014) The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates. Nature Communications, 5, 3657.
-
(2014)
Nature Communications
, vol.5
, pp. 3657
-
-
Berthelot, C.1
Brunet, F.2
Chalopin, D.3
-
9
-
-
79955577378
-
The coupling hypothesis: why genome scans may fail to map local adaptation genes
-
Bierne N, Welch J, Loire E, Bonhomme F, David P, (2011) The coupling hypothesis: why genome scans may fail to map local adaptation genes. Molecular Ecology, 20, 2044-2072.
-
(2011)
Molecular Ecology
, vol.20
, pp. 2044-2072
-
-
Bierne, N.1
Welch, J.2
Loire, E.3
Bonhomme, F.4
David, P.5
-
10
-
-
84908121405
-
Detecting genotypic changes associated with selective mortality at sea in Atlantic salmon: polygenic multi-locus analysis surpasses genome scan
-
Bourret V, Dionne M, Bernatchez L, (2014) Detecting genotypic changes associated with selective mortality at sea in Atlantic salmon: polygenic multi-locus analysis surpasses genome scan. Molecular Ecology, 18, 4444-4457.
-
(2014)
Molecular Ecology
, vol.18
, pp. 4444-4457
-
-
Bourret, V.1
Dionne, M.2
Bernatchez, L.3
-
11
-
-
84875647729
-
Genomic islands of divergence and their consequences for the resolution of spatial structure in an exploited marine fish
-
Bradbury IR, Hubert S, Higgins B, et al,. (2013) Genomic islands of divergence and their consequences for the resolution of spatial structure in an exploited marine fish. Evolutionary Applications, 6, 450-461.
-
(2013)
Evolutionary Applications
, vol.6
, pp. 450-461
-
-
Bradbury, I.R.1
Hubert, S.2
Higgins, B.3
-
12
-
-
84896922993
-
A dense linkage map for Chinook salmon (Oncorhynchus tshawytscha) reveals variable chromosomal divergence after an ancestral whole genome duplication event
-
Brieuc MS, Waters CD, Seeb JE, Naish KA, (2014) A dense linkage map for Chinook salmon (Oncorhynchus tshawytscha) reveals variable chromosomal divergence after an ancestral whole genome duplication event. G3 (Bethesda), 4, 447-460.
-
(2014)
G3 (Bethesda)
, vol.4
, pp. 447-460
-
-
Brieuc, M.S.1
Waters, C.D.2
Seeb, J.E.3
Naish, K.A.4
-
13
-
-
84884299558
-
Stacks: building and genotyping loci de novo from short-read sequences
-
Catchen JM, Amores A, Hohenlohe P, Cresko W, Postlethwait JH, (2011) Stacks: building and genotyping loci de novo from short-read sequences. G3: Genes, Genomes, Genetics, 1, 171-182.
-
(2011)
G3: Genes, Genomes, Genetics
, vol.1
, pp. 171-182
-
-
Catchen, J.M.1
Amores, A.2
Hohenlohe, P.3
Cresko, W.4
Postlethwait, J.H.5
-
14
-
-
0000156374
-
Phylogenetic analysis - models and estimation procedure
-
Cavalli-Sforza LL, Edwards AWF, (1967) Phylogenetic analysis-models and estimation procedure. Evolution, 21, 550-570.
-
(1967)
Evolution
, vol.21
, pp. 550-570
-
-
Cavalli-Sforza, L.L.1
Edwards, A.W.F.2
-
15
-
-
20144371089
-
Widespread parallel evolution in sticklebacks by repeated fixation of ectodysplasin alleles
-
Colosimo PF, Hosemann KE, Balabhadra S, et al,. (2005) Widespread parallel evolution in sticklebacks by repeated fixation of ectodysplasin alleles. Science, 307, 1928-1933.
-
(2005)
Science
, vol.307
, pp. 1928-1933
-
-
Colosimo, P.F.1
Hosemann, K.E.2
Balabhadra, S.3
-
16
-
-
19344367109
-
The genetic architecture of parallel armor plate reduction in threespine sticklebacks
-
Colosimo PF, Peichel CL, Nereng K, et al,. (2004) The genetic architecture of parallel armor plate reduction in threespine sticklebacks. Plos Biology, 2, 635-641.
-
(2004)
Plos Biology
, vol.2
, pp. 635-641
-
-
Colosimo, P.F.1
Peichel, C.L.2
Nereng, K.3
-
17
-
-
84869116803
-
The probability of genetic parallelism and convergence in natural populations
-
Conte GL, Arnegard ME, Peichel CL, Schluter D, (2012) The probability of genetic parallelism and convergence in natural populations. Proceedings of the Royal Society B-Biological Sciences, 279, 5039-5047.
-
(2012)
Proceedings of the Royal Society B-Biological Sciences
, vol.279
, pp. 5039-5047
-
-
Conte, G.L.1
Arnegard, M.E.2
Peichel, C.L.3
Schluter, D.4
-
18
-
-
77956491134
-
Using environmental correlations to identify loci underlying local adaptation
-
Coop G, Witonsky D, Di Rienzo A, Pritchard JK, (2010) Using environmental correlations to identify loci underlying local adaptation. Genetics, 185, 1411-1423.
-
(2010)
Genetics
, vol.185
, pp. 1411-1423
-
-
Coop, G.1
Witonsky, D.2
Di Rienzo, A.3
Pritchard, J.K.4
-
19
-
-
7244224987
-
BAPS 2: enhanced possibilities for the analysis of genetic population structure
-
Corander J, Waldmann P, Marttinen P, Sillanpaa MJ, (2004) BAPS 2: enhanced possibilities for the analysis of genetic population structure. Bioinformatics, 20, 2363-2369.
-
(2004)
Bioinformatics
, vol.20
, pp. 2363-2369
-
-
Corander, J.1
Waldmann, P.2
Marttinen, P.3
Sillanpaa, M.J.4
-
20
-
-
1942469390
-
Parallel genetic basis for repeated evolution of armor loss in Alaskan threespine stickleback populations
-
Cresko WA, Amores A, Wilson C, et al,. (2004) Parallel genetic basis for repeated evolution of armor loss in Alaskan threespine stickleback populations. Proceedings of the National Academy of Sciences, USA, 101, 6050-6055.
-
(2004)
Proceedings of the National Academy of Sciences, USA
, vol.101
, pp. 6050-6055
-
-
Cresko, W.A.1
Amores, A.2
Wilson, C.3
-
21
-
-
38449114584
-
Random forests for classification in ecology
-
Cutler DR, Edwards TC, Beard KH, Cutler A, Hess KT, (2007) Random forests for classification in ecology. Ecology, 88, 2783-2792.
-
(2007)
Ecology
, vol.88
, pp. 2783-2792
-
-
Cutler, D.R.1
Edwards, T.C.2
Beard, K.H.3
Cutler, A.4
Hess, K.T.5
-
22
-
-
77958150590
-
Sequencing the genome of the Atlantic salmon (Salmo salar)
-
Davidson WS, Koop BF, Jones SJM, et al,. (2010) Sequencing the genome of the Atlantic salmon (Salmo salar). Genome Biology, 11, 403.
-
(2010)
Genome Biology
, vol.11
, pp. 403
-
-
Davidson, W.S.1
Koop, B.F.2
Jones, S.J.M.3
-
23
-
-
30444433255
-
The power of allele frequency comparisons to detect the footprint of selection in natural and experimental situations
-
De Kovel CGF, (2006) The power of allele frequency comparisons to detect the footprint of selection in natural and experimental situations. Genetics Selection Evolution, 38, 3-23.
-
(2006)
Genetics Selection Evolution
, vol.38
, pp. 3-23
-
-
De Kovel, C.G.F.1
-
24
-
-
84874409839
-
Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations
-
De Mita S, Thuillet AC, Gay L, et al,. (2013) Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations. Molecular Ecology, 22, 1383-1399.
-
(2013)
Molecular Ecology
, vol.22
, pp. 1383-1399
-
-
De Mita, S.1
Thuillet, A.C.2
Gay, L.3
-
25
-
-
79956051868
-
Adaptation in the age of ecological genomics: insights from parallelism and convergence
-
Elmer KR, Meyer A, (2011) Adaptation in the age of ecological genomics: insights from parallelism and convergence. Trends in Ecology & Evolution, 26, 298-306.
-
(2011)
Trends in Ecology & Evolution
, vol.26
, pp. 298-306
-
-
Elmer, K.R.1
Meyer, A.2
-
26
-
-
84857207047
-
SNP discovery and genotyping for evolutionary genetics using RAD sequencing
-
Etter PD, Bassham S, Hohenlohe PA, Johnson EA, Cresko WA, (2011) SNP discovery and genotyping for evolutionary genetics using RAD sequencing. Molecular Methods for Evolutionary Genetics Book Series-Methods in Molecular Biology, 772, 157-178.
-
(2011)
Molecular Methods for Evolutionary Genetics Book Series - Methods in Molecular Biology
, vol.772
, pp. 157-178
-
-
Etter, P.D.1
Bassham, S.2
Hohenlohe, P.A.3
Johnson, E.A.4
Cresko, W.A.5
-
27
-
-
77953032930
-
Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows
-
Excoffier L, Lischer HEL, (2010) Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources, 10, 564-567.
-
(2010)
Molecular Ecology Resources
, vol.10
, pp. 564-567
-
-
Excoffier, L.1
Lischer, H.E.L.2
-
28
-
-
0026681074
-
Analysis of molecular variance inferred from metric distances amon DNA haplotypes - application to human mitochondrial-DNA restriction data
-
Excoffier L, Smouse PE, Quattro JM, (1992) Analysis of molecular variance inferred from metric distances amon DNA haplotypes-application to human mitochondrial-DNA restriction data. Genetics, 131, 479-491.
-
(1992)
Genetics
, vol.131
, pp. 479-491
-
-
Excoffier, L.1
Smouse, P.E.2
Quattro, J.M.3
-
30
-
-
58149347836
-
A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective
-
Foll M, Gaggiotti O, (2008) A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective. Genetics, 180, 977-993.
-
(2008)
Genetics
, vol.180
, pp. 977-993
-
-
Foll, M.1
Gaggiotti, O.2
-
31
-
-
1642324974
-
Conservation Units and preserving diversity
-
(eds Hendry A.P. Stearns S.C.), Oxford University Press, Oxford
-
Ford M, (2004) Conservation Units and preserving diversity. In: Evolution Illuminated: Salmon and their Relatives (eds, Hendry AP, Stearns SC,), pp. 339-357. Oxford University Press, Oxford.
-
(2004)
Evolution Illuminated: Salmon and their Relatives
, pp. 339-357
-
-
Ford, M.1
-
32
-
-
0035544509
-
Adaptive evolutionary conservation: towards a unified concept for defining conservation units
-
Fraser DJ, Bernatchez L, (2001) Adaptive evolutionary conservation: towards a unified concept for defining conservation units. Molecular Ecology, 10, 2741-2752.
-
(2001)
Molecular Ecology
, vol.10
, pp. 2741-2752
-
-
Fraser, D.J.1
Bernatchez, L.2
-
33
-
-
79951946915
-
Extent and scale of local adaptation in salmonid fishes: review and meta-analysis
-
Fraser DJ, Weir LK, Bernatchez L, Hansen MM, Taylor EB, (2011) Extent and scale of local adaptation in salmonid fishes: review and meta-analysis. Heredity, 106, 404-420.
-
(2011)
Heredity
, vol.106
, pp. 404-420
-
-
Fraser, D.J.1
Weir, L.K.2
Bernatchez, L.3
Hansen, M.M.4
Taylor, E.B.5
-
34
-
-
84865552514
-
Harnessing genomics for delineating conservation units
-
Funk WC, McKay JK, Hohenlohe PA, Allendorf FW, (2012) Harnessing genomics for delineating conservation units. Trends in Ecology & Evolution, 27, 489-496.
-
(2012)
Trends in Ecology & Evolution
, vol.27
, pp. 489-496
-
-
Funk, W.C.1
McKay, J.K.2
Hohenlohe, P.A.3
Allendorf, F.W.4
-
35
-
-
77953351710
-
An application of Random Forests to a genome-wide association dataset: methodological considerations & new findings
-
Goldstein BA, Hubbard AE, Cutler A, Barcellos LF, (2010) An application of Random Forests to a genome-wide association dataset: methodological considerations & new findings. BMC Genetics, 11, 49.
-
(2010)
BMC Genetics
, vol.11
, pp. 49
-
-
Goldstein, B.A.1
Hubbard, A.E.2
Cutler, A.3
Barcellos, L.F.4
-
36
-
-
14844359279
-
HIERFSTAT, a package for R to compute and test hierarchical F-statistics
-
Goudet J, (2005) HIERFSTAT, a package for R to compute and test hierarchical F-statistics. Molecular Ecology Notes, 5, 184-186.
-
(2005)
Molecular Ecology Notes
, vol.5
, pp. 184-186
-
-
Goudet, J.1
-
37
-
-
79951810475
-
Leadership, social capital and incentives promote successful fisheries
-
Gutierrez NL, Hilborn R, Defeo O, (2011) Leadership, social capital and incentives promote successful fisheries. Nature, 470, 386-389.
-
(2011)
Nature
, vol.470
, pp. 386-389
-
-
Gutierrez, N.L.1
Hilborn, R.2
Defeo, O.3
-
38
-
-
84883236704
-
Evaluating adaptive divergence between migratory and nonmigratory ecotypes of a salmonid fish, Oncorhynchus mykiss
-
Hale MC, Thrower FP, Berntson EA, Miller MR, Nichols KM, (2013) Evaluating adaptive divergence between migratory and nonmigratory ecotypes of a salmonid fish, Oncorhynchus mykiss. G3: Genes, Genomes, Genetics, 3, 1273-1285.
-
(2013)
G3: Genes, Genomes, Genetics
, vol.3
, pp. 1273-1285
-
-
Hale, M.C.1
Thrower, F.P.2
Berntson, E.A.3
Miller, M.R.4
Nichols, K.M.5
-
39
-
-
77952383023
-
Adaptations to new environments in humans: the role of subtle allele frequency shifts
-
Hancock AM, Alkorta-Aranburu G, Witonsky DB, Di Rienzo A, (2010) Adaptations to new environments in humans: the role of subtle allele frequency shifts. Philosophical Transactions of the Royal Society B-Biological Sciences, 365, 2459-2468.
-
(2010)
Philosophical Transactions of the Royal Society B-Biological Sciences
, vol.365
, pp. 2459-2468
-
-
Hancock, A.M.1
Alkorta-Aranburu, G.2
Witonsky, D.B.3
Di Rienzo, A.4
-
40
-
-
0001794786
-
Life history of Chinook salmon (Oncorhynchus tshawystscha)
-
(eds Groot C. Margolis L.), UBC Press, Vancouver
-
Healey MC, (1991) Life history of Chinook salmon (Oncorhynchus tshawystscha). In: Pacific Salmon Life Histories (eds, Groot C, Margolis L,), pp. 311-393. UBC Press, Vancouver.
-
(1991)
Pacific Salmon Life Histories
, pp. 311-393
-
-
Healey, M.C.1
-
41
-
-
0033427707
-
The pace of modern life: measuring rates of contemporary microevolution
-
Hendry AP, Kinnison MT, (1999) The pace of modern life: measuring rates of contemporary microevolution. Evolution, 53, 1637-1653.
-
(1999)
Evolution
, vol.53
, pp. 1637-1653
-
-
Hendry, A.P.1
Kinnison, M.T.2
-
42
-
-
84857071059
-
Single-Nucleotide Polymorphism (SNP) Loci Correlated with Run Timing in Adult Chinook Salmon from the Columbia River Basin
-
Hess JE, Narum SR, (2011) Single-Nucleotide Polymorphism (SNP) Loci Correlated with Run Timing in Adult Chinook Salmon from the Columbia River Basin. Transactions of the American Fisheries Society, 140, 855-864.
-
(2011)
Transactions of the American Fisheries Society
, vol.140
, pp. 855-864
-
-
Hess, J.E.1
Narum, S.R.2
-
43
-
-
77649219524
-
Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags
-
Hohenlohe PA, Bassham S, Etter PD, et al,. (2010) Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags. Plos Genetics, 6, e1000862.
-
(2010)
Plos Genetics
, vol.6
-
-
Hohenlohe, P.A.1
Bassham, S.2
Etter, P.D.3
-
44
-
-
84883172296
-
Predicting adaptive phenotypes from multilocus genotypes in Sitka ppruce (Picea sitchensis) using Random Forest
-
Holliday JA, Wang T, Aitken S, (2012) Predicting adaptive phenotypes from multilocus genotypes in Sitka ppruce (Picea sitchensis) using Random Forest. G3: Genes, Genomes, Genetics, 2, 1085-1093.
-
(2012)
G3: Genes, Genomes, Genetics
, vol.2
, pp. 1085-1093
-
-
Holliday, J.A.1
Wang, T.2
Aitken, S.3
-
45
-
-
15944395957
-
Norms of reaction and phenotypic plasticity in salmonid life histories
-
(eds Hendry A.P. Stearns S.C.), Oxford University Press, New York
-
Hutchings JA, (2004) Norms of reaction and phenotypic plasticity in salmonid life histories. In: Evolution Illuminated: Salmon and Their Relatives (eds, Hendry AP, Stearns SC,), pp. 154-174. Oxford University Press, New York.
-
(2004)
Evolution Illuminated: Salmon and Their Relatives
, pp. 154-174
-
-
Hutchings, J.A.1
-
46
-
-
84903956923
-
Genome-wide SNP analysis reveals a genetic basis for sea-age variation in a wild population of Atlantic salmon (Salmo salar)
-
Johnston SE, Orell P, Pritchard VL, et al,. (2014) Genome-wide SNP analysis reveals a genetic basis for sea-age variation in a wild population of Atlantic salmon (Salmo salar). Molecular Ecology, 23, 3452-3468.
-
(2014)
Molecular Ecology
, vol.23
, pp. 3452-3468
-
-
Johnston, S.E.1
Orell, P.2
Pritchard, V.L.3
-
47
-
-
44349095887
-
adegenet: a R package for the multivariate analysis of genetic markers
-
Jombart T, (2008) adegenet: a R package for the multivariate analysis of genetic markers. Bioinformatics, 24, 1403-1405.
-
(2008)
Bioinformatics
, vol.24
, pp. 1403-1405
-
-
Jombart, T.1
-
48
-
-
84859462157
-
The genomic basis of adaptive evolution in threespine sticklebacks
-
Jones FC, Grabherr MG, Chan YF, et al,. (2012) The genomic basis of adaptive evolution in threespine sticklebacks. Nature, 484, 55-61.
-
(2012)
Nature
, vol.484
, pp. 55-61
-
-
Jones, F.C.1
Grabherr, M.G.2
Chan, Y.F.3
-
49
-
-
17644375490
-
Evolution and development of facial bone morphology in threespine sticklebacks
-
Kimmel CB, Ullmann B, Walker C, et al,. (2005) Evolution and development of facial bone morphology in threespine sticklebacks. Proceedings of the National Academy of Sciences, USA, 102, 5791-5796.
-
(2005)
Proceedings of the National Academy of Sciences, USA
, vol.102
, pp. 5791-5796
-
-
Kimmel, C.B.1
Ullmann, B.2
Walker, C.3
-
50
-
-
84907439758
-
Comparative mapping between coho salmon (Oncorhynchus kisutch) and three other salmonids suggests a role for chromosomal rearrangements in the retention of duplicated regions following a Whole Genome Duplication event
-
Kodama M, Brieuc MSO, Devlin RH, Hard JJ, Naish KA, (2014) Comparative mapping between coho salmon (Oncorhynchus kisutch) and three other salmonids suggests a role for chromosomal rearrangements in the retention of duplicated regions following a Whole Genome Duplication event. G3: Genes, Genomes, Genetics, 4, 1717-1730.
-
(2014)
G3: Genes, Genomes, Genetics
, vol.4
, pp. 1717-1730
-
-
Kodama, M.1
Brieuc, M.S.O.2
Devlin, R.H.3
Hard, J.J.4
Naish, K.A.5
-
51
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg SL, (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biology, 10, R25.
-
(2009)
Genome Biology
, vol.10
, pp. R25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
52
-
-
84897881322
-
Genotyping by sequencing resolves shallow population structure to inform conservation of Chinook salmon (Oncorhynchus tshawytscha)
-
Larson WA, Seeb LW, Everett MV, et al,. (2014) Genotyping by sequencing resolves shallow population structure to inform conservation of Chinook salmon (Oncorhynchus tshawytscha). Evolutionary Applications, 7, 355-369.
-
(2014)
Evolutionary Applications
, vol.7
, pp. 355-369
-
-
Larson, W.A.1
Seeb, L.W.2
Everett, M.V.3
-
53
-
-
84859104219
-
The genetic differentiation at quantitative trait loci under local adaptation
-
Le Corre V, Kremer A, (2012) The genetic differentiation at quantitative trait loci under local adaptation. Molecular Ecology, 21, 1548-1566.
-
(2012)
Molecular Ecology
, vol.21
, pp. 1548-1566
-
-
Le Corre, V.1
Kremer, A.2
-
55
-
-
0345040873
-
Classification and regression by randomForest
-
Liaw A, Wiener M, (2002) Classification and regression by randomForest. R News, 2, 18-20.
-
(2002)
R News
, vol.2
, pp. 18-20
-
-
Liaw, A.1
Wiener, M.2
-
56
-
-
18744382780
-
PowerMarker: an integrated analysis environment for genetic marker analysis
-
Liu KJ, Muse SV, (2005) PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics, 21, 2128-2129.
-
(2005)
Bioinformatics
, vol.21
, pp. 2128-2129
-
-
Liu, K.J.1
Muse, S.V.2
-
57
-
-
84899624756
-
Evaluation of demographic history and neutral parameterization on the performance of F-ST outlier tests
-
Lotterhos KE, Whitlock MC, (2014) Evaluation of demographic history and neutral parameterization on the performance of F-ST outlier tests. Molecular Ecology, 23, 2178-2192.
-
(2014)
Molecular Ecology
, vol.23
, pp. 2178-2192
-
-
Lotterhos, K.E.1
Whitlock, M.C.2
-
58
-
-
84873720043
-
Do marine substrates 'look' and 'sound' the same? Supervised classification of multibeam acoustic data using autonomous underwater vehicle images
-
Lucieer V, Hill NA, Barrett NS, Nichol S, (2013) Do marine substrates 'look' and 'sound' the same? Supervised classification of multibeam acoustic data using autonomous underwater vehicle images. Estuarine Coastal and Shelf Science, 117, 94-106.
-
(2013)
Estuarine Coastal and Shelf Science
, vol.117
, pp. 94-106
-
-
Lucieer, V.1
Hill, N.A.2
Barrett, N.S.3
Nichol, S.4
-
59
-
-
0345304399
-
The power and promise of population genomics; from genotyping to genome typing
-
Luikart G, England PR, Tallmon D, Jordan S, Taberlet P, (2003) The power and promise of population genomics; from genotyping to genome typing. Nature Reviews Genetics, 4, 981-994.
-
(2003)
Nature Reviews Genetics
, vol.4
, pp. 981-994
-
-
Luikart, G.1
England, P.R.2
Tallmon, D.3
Jordan, S.4
Taberlet, P.5
-
60
-
-
78650974550
-
Genetic differentiation, clinal variation and phenotypic associations with growth cessation across the Populus tremula photoperiodic pathway
-
Ma XF, Hall D, St Onge KR, Jansson S, Ingvarsson PK, (2010) Genetic differentiation, clinal variation and phenotypic associations with growth cessation across the Populus tremula photoperiodic pathway. Genetics, 186, 1033-1044.
-
(2010)
Genetics
, vol.186
, pp. 1033-1044
-
-
Ma, X.F.1
Hall, D.2
St Onge, K.R.3
Jansson, S.4
Ingvarsson, P.K.5
-
61
-
-
84900525383
-
A well-constrained estimate for the timing of the salmonid whole genome duplication reveals major decoupling from species diversification
-
Macqueen DJ, Johnston IA, (2014) A well-constrained estimate for the timing of the salmonid whole genome duplication reveals major decoupling from species diversification. Proceedings of the Royal Society B-Biological Sciences, 281, 20132881.
-
(2014)
Proceedings of the Royal Society B-Biological Sciences
, vol.281
, pp. 20132881
-
-
Macqueen, D.J.1
Johnston, I.A.2
-
62
-
-
47649114360
-
Identifying footprints of directional and balancing selection in marine and freshwater three-spined stickleback (Gasterosteus aculeatus) populations
-
Makinen HS, Cano M, Merila J, (2008) Identifying footprints of directional and balancing selection in marine and freshwater three-spined stickleback (Gasterosteus aculeatus) populations. Molecular Ecology, 17, 3565-3582.
-
(2008)
Molecular Ecology
, vol.17
, pp. 3565-3582
-
-
Makinen, H.S.1
Cano, M.2
Merila, J.3
-
63
-
-
84891961350
-
Climate change, adaptation, and phenotypic plasticity: the problem and the evidence
-
Merilä J, Hendry AP, (2014) Climate change, adaptation, and phenotypic plasticity: the problem and the evidence. Evolutionary Applications, 7, 1-14.
-
(2014)
Evolutionary Applications
, vol.7
, pp. 1-14
-
-
Merilä, J.1
Hendry, A.P.2
-
64
-
-
36849071407
-
cis-regulatory changes in kit ligand expression and parallel evolution of pigmentation in sticklebacks and humans
-
Miller CT, Beleza S, Pollen AA, et al,. (2007a) cis-regulatory changes in kit ligand expression and parallel evolution of pigmentation in sticklebacks and humans. Cell, 131, 1179-1189.
-
(2007)
Cell
, vol.131
, pp. 1179-1189
-
-
Miller, C.T.1
Beleza, S.2
Pollen, A.A.3
-
65
-
-
33846874137
-
Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers
-
Miller MR, Dunham JP, Amores A, Cresko WA, Johnson EA, (2007b) Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers. Genome Research, 17, 240-248.
-
(2007)
Genome Research
, vol.17
, pp. 240-248
-
-
Miller, M.R.1
Dunham, J.P.2
Amores, A.3
Cresko, W.A.4
Johnson, E.A.5
-
66
-
-
84878424253
-
Genome-wide association study for backfat thickness in Canchim beef cattle using Random Forest approach
-
Mokry FB, Higa RH, Mudadu MD, et al,. (2013) Genome-wide association study for backfat thickness in Canchim beef cattle using Random Forest approach. BMC Genetics, 14, 47.
-
(2013)
BMC Genetics
, vol.14
, pp. 47
-
-
Mokry, F.B.1
Higa, R.H.2
Mudadu, M.D.3
-
67
-
-
80155172601
-
Power of data mining methods to detect genetic associations and interactions
-
Molinaro AM, Carriero N, Bjornson R, et al,. (2011) Power of data mining methods to detect genetic associations and interactions. Human Heredity, 72, 85-97.
-
(2011)
Human Heredity
, vol.72
, pp. 85-97
-
-
Molinaro, A.M.1
Carriero, N.2
Bjornson, R.3
-
68
-
-
84875950564
-
Divergent life-history races do not represent Chinook salmon coast-wide: the importance of scale in Quaternary biogeography
-
Moran P, Teel DJ, Banks MA, et al,. (2012) Divergent life-history races do not represent Chinook salmon coast-wide: the importance of scale in Quaternary biogeography. Canadian Journal of Fisheries and Aquatic Sciences, 70, 415-435.
-
(2012)
Canadian Journal of Fisheries and Aquatic Sciences
, vol.70
, pp. 415-435
-
-
Moran, P.1
Teel, D.J.2
Banks, M.A.3
-
69
-
-
56549114818
-
Bridging the gap between the phenotype and the genotype: linking genetic variation, selection, and adaptation in fishes
-
Naish KA, Hard JJ, (2008) Bridging the gap between the phenotype and the genotype: linking genetic variation, selection, and adaptation in fishes. Fish and Fisheries, 9, 396-422.
-
(2008)
Fish and Fisheries
, vol.9
, pp. 396-422
-
-
Naish, K.A.1
Hard, J.J.2
-
70
-
-
79951750950
-
Comparison of F-ST outlier tests for SNP loci under selection
-
Narum SR, Hess JE, (2011) Comparison of F-ST outlier tests for SNP loci under selection. Molecular Ecology Resources, 11, 184-194.
-
(2011)
Molecular Ecology Resources
, vol.11
, pp. 184-194
-
-
Narum, S.R.1
Hess, J.E.2
-
71
-
-
79951735330
-
Examining genetic lineages of Chinook salmon in the Columbia River Basin
-
Narum SR, Hess JE, Matala AP, (2010) Examining genetic lineages of Chinook salmon in the Columbia River Basin. Transactions of the American Fisheries Society, 139, 1465-1477.
-
(2010)
Transactions of the American Fisheries Society
, vol.139
, pp. 1465-1477
-
-
Narum, S.R.1
Hess, J.E.2
Matala, A.P.3
-
72
-
-
34547433021
-
Reproductive isolation following reintroduction of Chinook salmon with alternative life histories
-
Narum SR, William DA, Talbot AJ, Powell MS, (2007) Reproductive isolation following reintroduction of Chinook salmon with alternative life histories. Conservation Genetics, 8, 1123-1132.
-
(2007)
Conservation Genetics
, vol.8
, pp. 1123-1132
-
-
Narum, S.R.1
William, D.A.2
Talbot, A.J.3
Powell, M.S.4
-
73
-
-
29444452921
-
Molecular signatures of natural selection
-
Nielsen R, (2005) Molecular signatures of natural selection. Annual Review of Genetics, 39, 197-218.
-
(2005)
Annual Review of Genetics
, vol.39
, pp. 197-218
-
-
Nielsen, R.1
-
74
-
-
57349139399
-
A latitudinal cline in the Chinook salmon (Oncorhynchus tshawytscha) Clock gene: evidence for selection on PolyQ length variants
-
O'Malley KG, Banks MA, (2008) A latitudinal cline in the Chinook salmon (Oncorhynchus tshawytscha) Clock gene: evidence for selection on PolyQ length variants. Proceedings of the Royal Society B-Biological Sciences, 275, 2813-2821.
-
(2008)
Proceedings of the Royal Society B-Biological Sciences
, vol.275
, pp. 2813-2821
-
-
O'Malley, K.G.1
Banks, M.A.2
-
75
-
-
84889640369
-
Adaptive genetic markers discriminate migratory runs of Chinook salmon (Oncorhynchus tshawytscha) amid continued gene flow
-
O'Malley KG, Jacobson DP, Kurth R, Dill AJ, Banks MA, (2013) Adaptive genetic markers discriminate migratory runs of Chinook salmon (Oncorhynchus tshawytscha) amid continued gene flow. Evolutionary Applications, 6, 1184-1194.
-
(2013)
Evolutionary Applications
, vol.6
, pp. 1184-1194
-
-
O'Malley, K.G.1
Jacobson, D.P.2
Kurth, R.3
Dill, A.J.4
Banks, M.A.5
-
76
-
-
84869453241
-
Adaptive evolution: evaluating empirical support for theoretical predictions
-
Olson-Manning CF, Wagner MR, Mitchell-Olds T, (2012) Adaptive evolution: evaluating empirical support for theoretical predictions. Nature Reviews: Genetics, 13, 867-877.
-
(2012)
Nature Reviews: Genetics
, vol.13
, pp. 867-877
-
-
Olson-Manning, C.F.1
Wagner, M.R.2
Mitchell-Olds, T.3
-
77
-
-
0030203863
-
TreeView: an application to display phylogenetic trees on personal computers
-
Page RDM, (1996) TreeView: an application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences, 12, 357-358.
-
(1996)
Computer Applications in the Biosciences
, vol.12
, pp. 357-358
-
-
Page, R.D.M.1
-
78
-
-
0035924332
-
The genetic architecture of divergence between threespine stickleback species
-
Peichel CL, Nereng KS, Ohgi KA, et al,. (2001) The genetic architecture of divergence between threespine stickleback species. Nature, 414, 901-905.
-
(2001)
Nature
, vol.414
, pp. 901-905
-
-
Peichel, C.L.1
Nereng, K.S.2
Ohgi, K.A.3
-
79
-
-
84887318015
-
Parallel and nonparallel genome-wide divergence among replicate population pairs of freshwater and anadromous Atlantic salmon
-
Perrier C, Bourret V, Kent MP, Bernatchez L, (2013) Parallel and nonparallel genome-wide divergence among replicate population pairs of freshwater and anadromous Atlantic salmon. Molecular Ecology, 22, 5577-5593.
-
(2013)
Molecular Ecology
, vol.22
, pp. 5577-5593
-
-
Perrier, C.1
Bourret, V.2
Kent, M.P.3
Bernatchez, L.4
-
80
-
-
84964315866
-
Evolutionary rates for multivariate traits: the role of selection and genetic variation
-
Pitchers W, Wolf JB, Tregenza T, Hunt J, Dworkin I, (2014) Evolutionary rates for multivariate traits: the role of selection and genetic variation. Philosophical Transactions of the Royal Society B-Biological Sciences, 369, 20130252.
-
(2014)
Philosophical Transactions of the Royal Society B-Biological Sciences
, vol.369
, pp. 20130252
-
-
Pitchers, W.1
Wolf, J.B.2
Tregenza, T.3
Hunt, J.4
Dworkin, I.5
-
83
-
-
0035706528
-
Evolution of chinook salmon (Oncorhynchus tshawytscha) populations in New Zealand: pattern, rate, and process
-
Quinn TP, Kinnison MT, Unwin MJ, (2001) Evolution of chinook salmon (Oncorhynchus tshawytscha) populations in New Zealand: pattern, rate, and process. Genetica, 112, 493-513.
-
(2001)
Genetica
, vol.112
, pp. 493-513
-
-
Quinn, T.P.1
Kinnison, M.T.2
Unwin, M.J.3
-
85
-
-
84863436698
-
Method selection for species distribution modelling: are temporally or spatially independent evaluations necessary?
-
Roberts DR, Hamann A, (2012) Method selection for species distribution modelling: are temporally or spatially independent evaluations necessary? Ecography, 35, 792-802.
-
(2012)
Ecography
, vol.35
, pp. 792-802
-
-
Roberts, D.R.1
Hamann, A.2
-
86
-
-
84862564389
-
Uninformative polymorphisms bias genome scans for signatures of selection
-
Roesti M, Salzburger W, Berner D, (2012) Uninformative polymorphisms bias genome scans for signatures of selection. Bmc Evolutionary Biology, 12, 94.
-
(2012)
Bmc Evolutionary Biology
, vol.12
, pp. 94
-
-
Roesti, M.1
Salzburger, W.2
Berner, D.3
-
87
-
-
34248222284
-
A centennial celebration for quantitative genetics
-
Roff DA, (2007a) A centennial celebration for quantitative genetics. Evolution, 61, 1017-1032.
-
(2007)
Evolution
, vol.61
, pp. 1017-1032
-
-
Roff, D.A.1
-
88
-
-
33846269639
-
Contributions of genomics to life-history theory
-
Roff DA, (2007b) Contributions of genomics to life-history theory. Nature Reviews Genetics, 8, 116-125.
-
(2007)
Nature Reviews Genetics
, vol.8
, pp. 116-125
-
-
Roff, D.A.1
-
89
-
-
84885976815
-
Ecological genomics of local adaptation
-
Savolainen O, Lascoux M, Merila J, (2013) Ecological genomics of local adaptation. Nature Reviews Genetics, 14, 807-820.
-
(2013)
Nature Reviews Genetics
, vol.14
, pp. 807-820
-
-
Savolainen, O.1
Lascoux, M.2
Merila, J.3
-
90
-
-
33644974019
-
A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase
-
Scheet P, Stephens M, (2006) A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase. American Journal of Human Genetics, 78, 629-644.
-
(2006)
American Journal of Human Genetics
, vol.78
, pp. 629-644
-
-
Scheet, P.1
Stephens, M.2
-
91
-
-
38049125551
-
Development of a standardized DNA database for Chinook salmon
-
Seeb LW, Antonovich A, Banks AA, et al,. (2007) Development of a standardized DNA database for Chinook salmon. Fisheries, 32, 540-552.
-
(2007)
Fisheries
, vol.32
, pp. 540-552
-
-
Seeb, L.W.1
Antonovich, A.2
Banks, A.A.3
-
92
-
-
84921878509
-
Genomics and the challenging translation into conservation practice
-
Shafer ABA, Wolf JBW, Alves PC, et al,. (2015) Genomics and the challenging translation into conservation practice. Trends in Ecology & Evolution, 30, 78-87.
-
(2015)
Trends in Ecology & Evolution
, vol.30
, pp. 78-87
-
-
Shafer, A.B.A.1
Wolf, J.B.W.2
Alves, P.C.3
-
93
-
-
1942455815
-
Genetic and developmental basis of evolutionary pelvic reduction in threespine sticklebacks
-
Shapiro MD, Marks ME, Peichel CL, et al,. (2004) Genetic and developmental basis of evolutionary pelvic reduction in threespine sticklebacks. Nature, 428, 717-723.
-
(2004)
Nature
, vol.428
, pp. 717-723
-
-
Shapiro, M.D.1
Marks, M.E.2
Peichel, C.L.3
-
94
-
-
78149359895
-
Adaptation genomics: the next generation
-
Stapley J, Reger J, Feulner PGD, et al,. (2010) Adaptation genomics: the next generation. Trends in Ecology & Evolution, 25, 705-712.
-
(2010)
Trends in Ecology & Evolution
, vol.25
, pp. 705-712
-
-
Stapley, J.1
Reger, J.2
Feulner, P.G.D.3
-
95
-
-
0026339605
-
A review of local adaptation in Salmonidae, with particular reference to Pacific and Atlantic salmon
-
Taylor EB, (1991) A review of local adaptation in Salmonidae, with particular reference to Pacific and Atlantic salmon. Aquaculture, 98, 185-207.
-
(1991)
Aquaculture
, vol.98
, pp. 185-207
-
-
Taylor, E.B.1
-
96
-
-
0000262904
-
Genetic population-structure of Chinook salmon, Oncorhynchus tshawytscha, in the Pacific Northwest
-
Utter F, Milner G, Stahl G, Teel D, (1989) Genetic population-structure of Chinook salmon, Oncorhynchus tshawytscha, in the Pacific Northwest. Fishery Bulletin, 87, 239-264.
-
(1989)
Fishery Bulletin
, vol.87
, pp. 239-264
-
-
Utter, F.1
Milner, G.2
Stahl, G.3
Teel, D.4
-
97
-
-
0026364289
-
Pacific salmon, Oncorhynchus spp., and the definition of "species" under the Endangered Species Act
-
Waples RS, (1991) Pacific salmon, Oncorhynchus spp., and the definition of "species" under the Endangered Species Act. Marine Fisheries Review, 53, 11-22.
-
(1991)
Marine Fisheries Review
, vol.53
, pp. 11-22
-
-
Waples, R.S.1
-
98
-
-
0035709016
-
Characterizing diversity in salmon from the Pacific Northwest
-
Waples RS, Gustafson RG, Weitkamp LA, et al,. (2001) Characterizing diversity in salmon from the Pacific Northwest. Journal of Fish Biology, 59, 1-41.
-
(2001)
Journal of Fish Biology
, vol.59
, pp. 1-41
-
-
Waples, R.S.1
Gustafson, R.G.2
Weitkamp, L.A.3
-
99
-
-
1642354425
-
Life-history divergence in Chinook salmon: historic contingency and parallel evolution
-
Waples RS, Teel DJ, Myers JM, Marshall AR, (2004) Life-history divergence in Chinook salmon: historic contingency and parallel evolution. Evolution, 58, 386-403.
-
(2004)
Evolution
, vol.58
, pp. 386-403
-
-
Waples, R.S.1
Teel, D.J.2
Myers, J.M.3
Marshall, A.R.4
-
100
-
-
0021566877
-
Estimating F-statistics for the analysis of population-structure
-
Weir BS, Cockerham CC, (1984) Estimating F-statistics for the analysis of population-structure. Evolution, 38, 1358-1370.
-
(1984)
Evolution
, vol.38
, pp. 1358-1370
-
-
Weir, B.S.1
Cockerham, C.C.2
-
101
-
-
16344387924
-
Parallel genotypic adaptation: when evolution repeats itself
-
Wood TE, Burke JM, Rieseberg LH, (2005) Parallel genotypic adaptation: when evolution repeats itself. Genetica, 123, 157-170.
-
(2005)
Genetica
, vol.123
, pp. 157-170
-
-
Wood, T.E.1
Burke, J.M.2
Rieseberg, L.H.3
-
102
-
-
84872122626
-
Correction for population stratification in random forest analysis
-
Zhao Y, Chen F, Zhai RH, et al,. (2012) Correction for population stratification in random forest analysis. International Journal of Epidemiology, 41, 1798-1806.
-
(2012)
International Journal of Epidemiology
, vol.41
, pp. 1798-1806
-
-
Zhao, Y.1
Chen, F.2
Zhai, R.H.3
|