-
1
-
-
84969213492
-
Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls
-
10.1038/nature05911, 2719288, 17554300, WTCCC
-
WTCCC Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls. Nature 2007, 447:661-678. 10.1038/nature05911, 2719288, 17554300, WTCCC.
-
(2007)
Nature
, vol.447
, pp. 661-678
-
-
-
2
-
-
33745079199
-
The challenge for genetic epidemiologists: how to analyze large numbers of SNPs in relation to complex diseases
-
10.1186/1471-2156-7-23, 1479365, 16630340
-
Heidema AG, Boer JM, Nagelkerke N, Mariman EC, van der A DL, Feskens EJ. The challenge for genetic epidemiologists: how to analyze large numbers of SNPs in relation to complex diseases. BMC Genet 2006, 7:23. 10.1186/1471-2156-7-23, 1479365, 16630340.
-
(2006)
BMC Genet
, vol.7
, pp. 23
-
-
Heidema, A.G.1
Boer, J.M.2
Nagelkerke, N.3
Mariman, E.C.4
van der A, D.L.5
Feskens, E.J.6
-
3
-
-
12744269194
-
Identifying interacting SNPs using Monte Carlo logic regression
-
10.1002/gepi.20042, 15532037
-
Kooperberg C, Ruczinski I. Identifying interacting SNPs using Monte Carlo logic regression. Genet Epidemiol 2005, 28:157-170. 10.1002/gepi.20042, 15532037.
-
(2005)
Genet Epidemiol
, vol.28
, pp. 157-170
-
-
Kooperberg, C.1
Ruczinski, I.2
-
4
-
-
33645230600
-
Multifactor dimensionality reduction: an analysis strategy for modelling and detecting gene-gene interactions in human genetics and pharmacogenomics studies
-
Motsinger AA, Ritchie MD. Multifactor dimensionality reduction: an analysis strategy for modelling and detecting gene-gene interactions in human genetics and pharmacogenomics studies. Hum Genomics 2006, 2:318-328.
-
(2006)
Hum Genomics
, vol.2
, pp. 318-328
-
-
Motsinger, A.A.1
Ritchie, M.D.2
-
5
-
-
0038059014
-
Analysis of multiple single nucleotide polymorphisms of candidate genes related to coronary heart disease susceptibility by using support vector machines
-
10.1515/CCLM.2003.080, 12747598
-
Yoon Y, Song J, Hong S, Kim J. Analysis of multiple single nucleotide polymorphisms of candidate genes related to coronary heart disease susceptibility by using support vector machines. Clin Chem Lab Med 2003, 41:529-534. 10.1515/CCLM.2003.080, 12747598.
-
(2003)
Clin Chem Lab Med
, vol.41
, pp. 529-534
-
-
Yoon, Y.1
Song, J.2
Hong, S.3
Kim, J.4
-
6
-
-
12744259874
-
Identifying SNPs predictive of phenotype using random forests
-
10.1002/gepi.20041, 15593090
-
Bureau A, Dupuis J, Falls K, Lunetta KL, Hayward B, Keith TP, Van Eerdewegh P. Identifying SNPs predictive of phenotype using random forests. Genet Epidemiol 2005, 28:171-182. 10.1002/gepi.20041, 15593090.
-
(2005)
Genet Epidemiol
, vol.28
, pp. 171-182
-
-
Bureau, A.1
Dupuis, J.2
Falls, K.3
Lunetta, K.L.4
Hayward, B.5
Keith, T.P.6
Van Eerdewegh, P.7
-
7
-
-
30644464444
-
Gene selection and classification of microarray data using random forest
-
10.1186/1471-2105-7-3, 1363357, 16398926
-
Díaz-Uriarte R, de Andrés Alvarez S. Gene selection and classification of microarray data using random forest. BMC Bioinformatics 2006, 7:3. 10.1186/1471-2105-7-3, 1363357, 16398926.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 3
-
-
Díaz-Uriarte, R.1
de Andrés Alvarez, S.2
-
8
-
-
38049012281
-
Analyses of single marker and pairwise effects of candidate loci for rheumatoid arthritis using logistic regression and random forests
-
10.1186/1753-6561-1-s1-s54, 2367457, 18466554
-
Glaser B, Nikolov I, Chubb D, Hamshere ML, Segurado R, Moskvina V, Holmans P. Analyses of single marker and pairwise effects of candidate loci for rheumatoid arthritis using logistic regression and random forests. BMC Proc 2007, 1(Suppl 1):S54. 10.1186/1753-6561-1-s1-s54, 2367457, 18466554.
-
(2007)
BMC Proc
, vol.1
, Issue.SUPPL 1
-
-
Glaser, B.1
Nikolov, I.2
Chubb, D.3
Hamshere, M.L.4
Segurado, R.5
Moskvina, V.6
Holmans, P.7
-
9
-
-
25444453244
-
Screening large-scale association study data: exploiting interactions using random forests
-
10.1186/1471-2156-5-32, 545646, 15588316
-
Lunetta KL, Hayward LB, Segal J, Van Eerdewegh P. Screening large-scale association study data: exploiting interactions using random forests. BMC Genet 2004, 5:32. 10.1186/1471-2156-5-32, 545646, 15588316.
-
(2004)
BMC Genet
, vol.5
, pp. 32
-
-
Lunetta, K.L.1
Hayward, L.B.2
Segal, J.3
Van Eerdewegh, P.4
-
10
-
-
64549095229
-
Performance of random forest when SNPs are in linkage disequilibrium
-
10.1186/1471-2105-10-78, 2666661, 19265542
-
Meng YA, Yu Y, Cupples LA, Farrer LA, Lunetta KL. Performance of random forest when SNPs are in linkage disequilibrium. BMC Bioinformatics 2009, 10:78. 10.1186/1471-2105-10-78, 2666661, 19265542.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 78
-
-
Meng, Y.A.1
Yu, Y.2
Cupples, L.A.3
Farrer, L.A.4
Lunetta, K.L.5
-
11
-
-
58149343568
-
Application of two machine learning algorithms to genetic association studies in the presence of covariates
-
10.1186/1471-2156-9-71, 2620353, 19014573
-
Nonyane B, Foulkes A. Application of two machine learning algorithms to genetic association studies in the presence of covariates. BMC Genetics 2008, 9:71. 10.1186/1471-2156-9-71, 2620353, 19014573.
-
(2008)
BMC Genetics
, vol.9
, pp. 71
-
-
Nonyane, B.1
Foulkes, A.2
-
12
-
-
38049048625
-
Classification of rheumatoid arthritis status with candidate gene and genome-wide single-nucleotide polymorphisms using random forests
-
10.1186/1753-6561-1-s1-s62, 2367463, 18466563
-
Sun YV, Cai Z, Desai K, Lawrance R, Leff R, Jawaid A, Kardia SL, Yang H. Classification of rheumatoid arthritis status with candidate gene and genome-wide single-nucleotide polymorphisms using random forests. BMC Proc 2007, 1(Suppl 1):S62. 10.1186/1753-6561-1-s1-s62, 2367463, 18466563.
-
(2007)
BMC Proc
, vol.1
, Issue.SUPPL 1
-
-
Sun, Y.V.1
Cai, Z.2
Desai, K.3
Lawrance, R.4
Leff, R.5
Jawaid, A.6
Kardia, S.L.7
Yang, H.8
-
13
-
-
0035478854
-
Random Forests
-
Breiman L. Random Forests. Machine Learning 2001, 45:5-32.
-
(2001)
Machine Learning
, vol.45
, pp. 5-32
-
-
Breiman, L.1
-
14
-
-
0003802343
-
Classification and Regression Trees
-
New York: Chapman and Hall
-
Breiman L, Friedman J, Olshen R, Stone C. Classification and Regression Trees. 1984, New York: Chapman and Hall.
-
(1984)
-
-
Breiman, L.1
Friedman, J.2
Olshen, R.3
Stone, C.4
-
15
-
-
0030211964
-
Bagging Predictors
-
Breiman L. Bagging Predictors. Machine Learning 1996, 24:123-140.
-
(1996)
Machine Learning
, vol.24
, pp. 123-140
-
-
Breiman, L.1
-
16
-
-
0004140497
-
Out-Of-Bag Estimation
-
Tech. rep., UC Berkeley
-
Breiman L. Out-Of-Bag Estimation. 1996, Tech. rep., UC Berkeley.
-
(1996)
-
-
Breiman, L.1
-
17
-
-
0003684449
-
Elements of Statistical Learning
-
New York: Springer, 2
-
Hastie T, Tibshirani R, Friedman J. Elements of Statistical Learning. 2009, New York: Springer, 2.
-
(2009)
-
-
Hastie, T.1
Tibshirani, R.2
Friedman, J.3
-
18
-
-
70350623143
-
Random Forests: some methodological insights
-
Genuer R, Poggi JM, Tuleau C. Random Forests: some methodological insights. Tech rep, INRIA 2008, , http://hal.inria.fr/inria-00340725/en/
-
(2008)
Tech rep, INRIA
-
-
Genuer, R.1
Poggi, J.M.2
Tuleau, C.3
-
19
-
-
34548299105
-
Risk alleles for multiple sclerosis identified by a genomewide study
-
10.1056/NEJMoa073493, 17660530
-
Hafler DA, Compston A, Sawcer S, Lander ES, Daly MJ, De Jager PL, de Bakker PI, Gabriel SB, Mirel DB, Ivinson AJ, Pericak-Vance MA, Gregory SG, Rioux JD, McCauley JL, Haines JL, Barcellos LF, Cree B, Oksenberg JR, Hauser SL. Risk alleles for multiple sclerosis identified by a genomewide study. N Engl J Med 2007, 357:851-862. 10.1056/NEJMoa073493, 17660530.
-
(2007)
N Engl J Med
, vol.357
, pp. 851-862
-
-
Hafler, D.A.1
Compston, A.2
Sawcer, S.3
Lander, E.S.4
Daly, M.J.5
De Jager, P.L.6
de Bakker, P.I.7
Gabriel, S.B.8
Mirel, D.B.9
Ivinson, A.J.10
Pericak-Vance, M.A.11
Gregory, S.G.12
Rioux, J.D.13
McCauley, J.L.14
Haines, J.L.15
Barcellos, L.F.16
Cree, B.17
Oksenberg, J.R.18
Hauser, S.L.19
-
20
-
-
35348817330
-
Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering
-
10.1086/521987, 2265661, 17924348
-
Browning SR, Browning BL. Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering. Am J Hum Genet 2007, 81:1084-1097. 10.1086/521987, 2265661, 17924348.
-
(2007)
Am J Hum Genet
, vol.81
, pp. 1084-1097
-
-
Browning, S.R.1
Browning, B.L.2
-
21
-
-
34548292504
-
PLINK: a tool set for whole-genome association and population-based linkage analyses
-
10.1086/519795, 1950838, 17701901
-
Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MA, Bender D, Maller J, Sklar P, de Bakker PI, Daly MJ, Sham PC. PLINK: a tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet 2007, 81:559-575. 10.1086/519795, 1950838, 17701901.
-
(2007)
Am J Hum Genet
, vol.81
, pp. 559-575
-
-
Purcell, S.1
Neale, B.2
Todd-Brown, K.3
Thomas, L.4
Ferreira, M.A.5
Bender, D.6
Maller, J.7
Sklar, P.8
de Bakker, P.I.9
Daly, M.J.10
Sham, P.C.11
-
22
-
-
0345040873
-
Classification and regression by randomForest
-
Liaw A, Wiener M. Classification and regression by randomForest. Rnews 2002, 2:18-22.
-
(2002)
Rnews
, vol.2
, pp. 18-22
-
-
Liaw, A.1
Wiener, M.2
-
23
-
-
84883344956
-
Salford Systems
-
Salford Systems. , http://salford-systems.com/
-
-
-
-
25
-
-
28444460187
-
Multiple sclerosis genetics: leaving no stone unturned
-
10.1038/sj.gene.6364237, 15973459
-
Oksenberg JR, Barcellos LF. Multiple sclerosis genetics: leaving no stone unturned. Genes Immun 2005, 6:375-387. 10.1038/sj.gene.6364237, 15973459.
-
(2005)
Genes Immun
, vol.6
, pp. 375-387
-
-
Oksenberg, J.R.1
Barcellos, L.F.2
-
26
-
-
33847096395
-
Bias in random forest variable importance measures: illustrations, sources and a solution
-
10.1186/1471-2105-8-25, 1796903, 17254353
-
Strobl C, Boulesteix AL, Zeileis A, Hothorn T. Bias in random forest variable importance measures: illustrations, sources and a solution. BMC Bioinformatics 2007, 8:25. 10.1186/1471-2105-8-25, 1796903, 17254353.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 25
-
-
Strobl, C.1
Boulesteix, A.L.2
Zeileis, A.3
Hothorn, T.4
-
27
-
-
40949127393
-
How to interpret a genome-wide association study
-
10.1001/jama.299.11.1335, 18349094
-
Pearson TA, Manolio TA. How to interpret a genome-wide association study. JAMA 2008, 299:1335-1344. 10.1001/jama.299.11.1335, 18349094.
-
(2008)
JAMA
, vol.299
, pp. 1335-1344
-
-
Pearson, T.A.1
Manolio, T.A.2
-
28
-
-
67649881102
-
Genome-wide association study identifies new multiple sclerosis susceptibility loci on chromosomes 12 and 20
-
10.1038/ng.396, 19525955, Australia, Consortium NZMSG
-
Australia, Consortium NZMSG Genome-wide association study identifies new multiple sclerosis susceptibility loci on chromosomes 12 and 20. Nature Genetics 2009, 41:824-828. 10.1038/ng.396, 19525955, Australia, Consortium NZMSG.
-
(2009)
Nature Genetics
, vol.41
, pp. 824-828
-
-
-
29
-
-
34447121889
-
Glucocorticoids plus opioids up-regulate genes that influence neuronal function
-
10.1007/s10571-007-9151-3, 17554624
-
Ward GR, Franklin SO, Gerald TM, Dempsey KT, Clodfelter DE, Krissinger DJ, Patel KM, Vrana KE, Howlett AC. Glucocorticoids plus opioids up-regulate genes that influence neuronal function. Cell Mol Neurobiol 2007, 27:651-660. 10.1007/s10571-007-9151-3, 17554624.
-
(2007)
Cell Mol Neurobiol
, vol.27
, pp. 651-660
-
-
Ward, G.R.1
Franklin, S.O.2
Gerald, T.M.3
Dempsey, K.T.4
Clodfelter, D.E.5
Krissinger, D.J.6
Patel, K.M.7
Vrana, K.E.8
Howlett, A.C.9
-
30
-
-
67649876123
-
Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci
-
10.1038/ng.401, 2757648, 19525953
-
deJager PL, Jia X, Wang J, deBakker PIQ, Ottoboni L, Aggarwal NT, Piccio L, Raychaudhuri S, Tran D, Aubin C, Briskin R, Romano S, IMSGC. Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci. Nature Genetics 2009, 41:776-782. 10.1038/ng.401, 2757648, 19525953.
-
(2009)
Nature Genetics
, vol.41
, pp. 776-782
-
-
deJager, P.L.1
Jia, X.2
Wang, J.3
deBakker, P.I.Q.4
Ottoboni, L.5
Aggarwal, N.T.6
Piccio, L.7
Raychaudhuri, S.8
Tran, D.9
Aubin, C.10
Briskin, R.11
Romano, S.12
IMSGC13
-
31
-
-
51449109314
-
Association analysis of 528 intra-genic SNPs in a region of chromosome 10 linked to late onset Alzheimer's disease
-
10.1002/ajmg.b.30670, 18163421, B
-
Morgan AR, Hamilton G, Turic D, Jehu L, Harold D, Abraham R, Hollingworth P, Moskvina V, Brayne C, Rubinsztein DC, Lynch A, Lawlor B, Gill M, O'Donovan M, Powell J, Lovestone S, Williams J, Owen MJ. Association analysis of 528 intra-genic SNPs in a region of chromosome 10 linked to late onset Alzheimer's disease. Am J Med Genet B Neuropsychiatr Genet 2008, 147B:727-731. 10.1002/ajmg.b.30670, 18163421.
-
(2008)
Am J Med Genet B Neuropsychiatr Genet
, vol.147
, pp. 727-731
-
-
Morgan, A.R.1
Hamilton, G.2
Turic, D.3
Jehu, L.4
Harold, D.5
Abraham, R.6
Hollingworth, P.7
Moskvina, V.8
Brayne, C.9
Rubinsztein, D.C.10
Lynch, A.11
Lawlor, B.12
Gill, M.13
O'Donovan, M.14
Powell, J.15
Lovestone, S.16
Williams, J.17
Owen, M.J.18
-
32
-
-
60949108166
-
Phactr2 and Parkinson's disease
-
10.1016/j.neulet.2009.02.009, 2684848, 19429005
-
Wider C, Lincoln SJ, Heckman MG, Diehl NN, Stone JT, Haugarvoll K, Aasly JO, Gibson JM, Lynch T, Rajput A, Rajput ML, Uitti RJ, Wszolek ZK, Farrer MJ, Ross OA. Phactr2 and Parkinson's disease. Neurosci Lett 2009, 453:9-11. 10.1016/j.neulet.2009.02.009, 2684848, 19429005.
-
(2009)
Neurosci Lett
, vol.453
, pp. 9-11
-
-
Wider, C.1
Lincoln, S.J.2
Heckman, M.G.3
Diehl, N.N.4
Stone, J.T.5
Haugarvoll, K.6
Aasly, J.O.7
Gibson, J.M.8
Lynch, T.9
Rajput, A.10
Rajput, M.L.11
Uitti, R.J.12
Wszolek, Z.K.13
Farrer, M.J.14
Ross, O.A.15
-
33
-
-
42949137526
-
Role of interleukin-7 in degenerative and inflammatory joint diseases
-
10.1186/ar2395, 2453758, 18466642
-
van Roon JA, Lafeber FP. Role of interleukin-7 in degenerative and inflammatory joint diseases. Arthritis Res Ther 2008, 10:107. 10.1186/ar2395, 2453758, 18466642.
-
(2008)
Arthritis Res Ther
, vol.10
, pp. 107
-
-
van Roon, J.A.1
Lafeber, F.P.2
|