메뉴 건너뛰기




Volumn 6, Issue 3, 2013, Pages 450-461

Genomic islands of divergence and their consequences for the resolution of spatial structure in an exploited marine fish

Author keywords

Atlantic cod; Divergent selection; Genome scan; Outlier loci; Population genomics; Single nucleotide polymorphism

Indexed keywords


EID: 84875647729     PISSN: 17524563     EISSN: 17524571     Source Type: Journal    
DOI: 10.1111/eva.12026     Document Type: Article
Times cited : (120)

References (62)
  • 2
    • 77954260692 scopus 로고    scopus 로고
    • Assessing the power of informative subsets of loci for population assignment: standard methods are upwardly biased
    • Anderson, E. C. 2010. Assessing the power of informative subsets of loci for population assignment: standard methods are upwardly biased. Molecular Ecology Resources 10:701-710.
    • (2010) Molecular Ecology Resources , vol.10 , pp. 701-710
    • Anderson, E.C.1
  • 3
    • 0030404875 scopus 로고    scopus 로고
    • Microsatellite polymorphism and the population structure of Atlantic cod (Gadus morhua) in the Northwest Atlantic
    • Bentzen, P., C. T. Taggart, D. E. Ruzzante, and D. Cook 1996. Microsatellite polymorphism and the population structure of Atlantic cod (Gadus morhua) in the Northwest Atlantic. Canadian Journal of Fisheries and Aquatic Sciences 53:2706-2721.
    • (1996) Canadian Journal of Fisheries and Aquatic Sciences , vol.53 , pp. 2706-2721
    • Bentzen, P.1    Taggart, C.T.2    Ruzzante, D.E.3    Cook, D.4
  • 4
    • 79955577378 scopus 로고    scopus 로고
    • The coupling hypothesis: why genome scans may fail to map local adaptation genes
    • Bierne, N., J. Welch, E. Loire, F. Bonhomme, and P. David 2011. The coupling hypothesis: why genome scans may fail to map local adaptation genes. Molecular Ecology 20:2044-2072.
    • (2011) Molecular Ecology , vol.20 , pp. 2044-2072
    • Bierne, N.1    Welch, J.2    Loire, E.3    Bonhomme, F.4    David, P.5
  • 5
    • 77957905500 scopus 로고    scopus 로고
    • Integrating the markers Pan I and haemoglobin with the genetic linkage map of Atlantic cod (Gadus morhua)
    • Borza, T., B. Higgins, G. Simpson, and S. Bowman 2010. Integrating the markers Pan I and haemoglobin with the genetic linkage map of Atlantic cod (Gadus morhua). BMC Research Notes 3:261.
    • (2010) BMC Research Notes , vol.3 , pp. 261
    • Borza, T.1    Higgins, B.2    Simpson, G.3    Bowman, S.4
  • 9
    • 56049094112 scopus 로고    scopus 로고
    • Intraspecific phylogeographic genomics from multiple complete mtDNA genomes in Atlantic Cod (Gadus morhua): origins of the "Codmother," trans-Atlantic vicariance, and mid-glacial population expansion
    • Carr, S. M., and H. D. Marshall 2008. Intraspecific phylogeographic genomics from multiple complete mtDNA genomes in Atlantic Cod (Gadus morhua): origins of the "Codmother, " trans-Atlantic vicariance, and mid-glacial population expansion. Genetics 108:381-389.
    • (2008) Genetics , vol.108 , pp. 381-389
    • Carr, S.M.1    Marshall, H.D.2
  • 10
    • 27744434905 scopus 로고    scopus 로고
    • Macro- and micro-geographic variation in pantophysin (Pan I) allele frequencies in NE Atlantic cod Gadus morhua
    • Case, R. A. J., W. F. Hutchinson, L. Hauser, C. Van Oosterhout, and G. R. Carvalho 2005. Macro- and micro-geographic variation in pantophysin (Pan I) allele frequencies in NE Atlantic cod Gadus morhua. Marine Ecology Progress Series 301:267-278.
    • (2005) Marine Ecology Progress Series , vol.301 , pp. 267-278
    • Case, R.A.J.1    Hutchinson, W.F.2    Hauser, L.3    Van Oosterhout, C.4    Carvalho, G.R.5
  • 11
    • 33747078134 scopus 로고    scopus 로고
    • Bayesian identification of admixture events using multi-locus molecular markers
    • Corander, J., and P. Marttinen 2006. Bayesian identification of admixture events using multi-locus molecular markers. Molecular Ecology 15:2833-2843.
    • (2006) Molecular Ecology , vol.15 , pp. 2833-2843
    • Corander, J.1    Marttinen, P.2
  • 14
    • 0037792156 scopus 로고    scopus 로고
    • An inexpensive and high-throughput procedure to extract and purify total genomic DNA for population studies
    • Elphinstone, M. S., G. N. Hinten, M. J. Anderson, and C. J. Nock 2003. An inexpensive and high-throughput procedure to extract and purify total genomic DNA for population studies. Molecular Ecology 3:317-320.
    • (2003) Molecular Ecology , vol.3 , pp. 317-320
    • Elphinstone, M.S.1    Hinten, G.N.2    Anderson, M.J.3    Nock, C.J.4
  • 15
    • 77953032930 scopus 로고    scopus 로고
    • Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows
    • Excoffier, L., and H. E. Lischer 2010. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources 10:546-567
    • (2010) Molecular Ecology Resources , vol.10 , pp. 546-567
    • Excoffier, L.1    Lischer, H.E.2
  • 16
    • 70349506039 scopus 로고    scopus 로고
    • Detecting loci under selection in a hierarchically structured population
    • Excoffier, L., T. Hofer, and M. Foll 2009. Detecting loci under selection in a hierarchically structured population. Heredity 103:285-298.
    • (2009) Heredity , vol.103 , pp. 285-298
    • Excoffier, L.1    Hofer, T.2    Foll, M.3
  • 17
    • 77952690357 scopus 로고    scopus 로고
    • The efficacy of divergence hitchhiking in generating genomic islands during ecological speciation
    • Feder, J. L., and P. Nosil 2010. The efficacy of divergence hitchhiking in generating genomic islands during ecological speciation. Evolution 64:1729-1747.
    • (2010) Evolution , vol.64 , pp. 1729-1747
    • Feder, J.L.1    Nosil, P.2
  • 18
    • 58149347836 scopus 로고    scopus 로고
    • A Genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective
    • Foll, M., and O. Gaggiotti 2008. A Genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective. Genetics 180:977-993.
    • (2008) Genetics , vol.180 , pp. 977-993
    • Foll, M.1    Gaggiotti, O.2
  • 20
    • 0035544509 scopus 로고    scopus 로고
    • Adaptive evolutionary conservation: towards a unified concept for defining conservation units
    • Fraser, D. J., and L. Bernatchez 2001. Adaptive evolutionary conservation: towards a unified concept for defining conservation units. Molecular Ecology 10:2741-2752.
    • (2001) Molecular Ecology , vol.10 , pp. 2741-2752
    • Fraser, D.J.1    Bernatchez, L.2
  • 24
    • 33744816190 scopus 로고    scopus 로고
    • Genomic islands of differentiation between house mouse subspecies
    • Harr, B. 2006. Genomic islands of differentiation between house mouse subspecies. Genome Research 16:730-737.
    • (2006) Genome Research , vol.16 , pp. 730-737
    • Harr, B.1
  • 25
    • 56549118386 scopus 로고    scopus 로고
    • Paradigm shifts in marine fisheries genetics: ugly hypotheses slain by beautiful facts
    • Hauser, L., and G. R. Carvalho 2008. Paradigm shifts in marine fisheries genetics: ugly hypotheses slain by beautiful facts. Fish and Fisheries 9:333-362.
    • (2008) Fish and Fisheries , vol.9 , pp. 333-362
    • Hauser, L.1    Carvalho, G.R.2
  • 27
    • 70249102114 scopus 로고    scopus 로고
    • Development of single nucleotide polymorphism markers for Atlantic cod (Gadus morhua) using expressed sequences
    • Hubert, S., J. Tarrant Bussey, B. Higgins, B. A. Curtis, and S. Bowman 2009. Development of single nucleotide polymorphism markers for Atlantic cod (Gadus morhua) using expressed sequences. Aquaculture 296:7-14.
    • (2009) Aquaculture , vol.296 , pp. 7-14
    • Hubert, S.1    Tarrant Bussey, J.2    Higgins, B.3    Curtis, B.A.4    Bowman, S.5
  • 28
    • 77951241851 scopus 로고    scopus 로고
    • Development of a SNP resource and a genetic linkage map for Atlantic cod (Gadus morhua)
    • Hubert, S., B. Higgins, T. Borza, and S. Bowman 2010. Development of a SNP resource and a genetic linkage map for Atlantic cod (Gadus morhua). BMC Genomics 11:191.
    • (2010) BMC Genomics , vol.11 , pp. 191
    • Hubert, S.1    Higgins, B.2    Borza, T.3    Bowman, S.4
  • 29
    • 79958833485 scopus 로고    scopus 로고
    • Historical changes in genotypic frequencies at the Pantophysin locus in Atlantic cod (Gadus morhua) in Icelandic waters: evidence of fisheries-induced selection?
    • Jakobsdóttir, K. B., H. Pardoe, Á. Magnússon, H. Björnsson, C. Pampoulie, D. E. Ruzzante, and G. Marteinsdóttir 2011. Historical changes in genotypic frequencies at the Pantophysin locus in Atlantic cod (Gadus morhua) in Icelandic waters: evidence of fisheries-induced selection? Evolutionary Applications 4:562-573.
    • (2011) Evolutionary Applications , vol.4 , pp. 562-573
    • Jakobsdóttir, K.B.1    Pardoe, H.2    Magnússon, A.3    Björnsson, H.4    Pampoulie, C.5    Ruzzante, D.E.6    Marteinsdóttir, G.7
  • 31
    • 33744466839 scopus 로고    scopus 로고
    • Chromosome inversions, local adaptation and speciation
    • Kirkpatrick, M., and N. H. Barton 2006. Chromosome inversions, local adaptation and speciation. Genetics 173:419-434.
    • (2006) Genetics , vol.173 , pp. 419-434
    • Kirkpatrick, M.1    Barton, N.H.2
  • 32
    • 84864288747 scopus 로고    scopus 로고
    • Environmental selection on transcriptome-derived SNPs in a high gene flow marine fish, the Atlantic herring (Clupea harengus)
    • Limborg, M. T., S. J. Helyar, M. De Bruyn, M. I. Taylor, E. E. Nielsen, R. Ogden, G. R. Carvalho et al. 2012. Environmental selection on transcriptome-derived SNPs in a high gene flow marine fish, the Atlantic herring (Clupea harengus). Molecular Ecology 21:3686-3703.
    • (2012) Molecular Ecology , vol.21 , pp. 3686-3703
    • Limborg, M.T.1    Helyar, S.J.2    De Bruyn, M.3    Taylor, M.I.4    Nielsen, E.E.5    Ogden, R.6    Carvalho, G.R.7
  • 33
    • 0016220238 scopus 로고
    • The hitch-hiking effect of a favorable gene
    • Maynard-Smith, J., and J. Haigh 1974. The hitch-hiking effect of a favorable gene. Genetical Research 23:23-35.
    • (1974) Genetical Research , vol.23 , pp. 23-35
    • Maynard-Smith, J.1    Haigh, J.2
  • 34
    • 77955012273 scopus 로고    scopus 로고
    • Phylogeography of 3 North Atlantic wolffish species (Anarhichas spp.) with phylogenetic relationships within the family Anarhichadidae
    • McCusker, M. R., and P. Bentzen 2010. Phylogeography of 3 North Atlantic wolffish species (Anarhichas spp.) with phylogenetic relationships within the family Anarhichadidae. Journal of Heredity 101:594-601.
    • (2010) Journal of Heredity , vol.101 , pp. 594-601
    • McCusker, M.R.1    Bentzen, P.2
  • 39
    • 79951750950 scopus 로고    scopus 로고
    • Comparison of FST outlier tests for SNP loci under selection
    • Narum, R., and J. E. Hess 2011. Comparison of FST outlier tests for SNP loci under selection. Molecular Ecology Resources 11:184-194.
    • (2011) Molecular Ecology Resources , vol.11 , pp. 184-194
    • Narum, R.1    Hess, J.E.2
  • 40
    • 0037432734 scopus 로고    scopus 로고
    • Chromosomal speciation and molecular divergence-accelerated evolution in rearranged chromosomes
    • Navarro, A., and N. H. Barton 2003. Chromosomal speciation and molecular divergence-accelerated evolution in rearranged chromosomes. Science 300:321-324.
    • (2003) Science , vol.300 , pp. 321-324
    • Navarro, A.1    Barton, N.H.2
  • 41
    • 68149105752 scopus 로고    scopus 로고
    • Population genomics of marine fishes: identifying adaptive variation in space and time
    • Nielsen, E. E., J. Hemmer-Hansen, P. F. Larsen, and D. Bekkevold 2009a. Population genomics of marine fishes: identifying adaptive variation in space and time. Molecular Ecology 18:3128-3150.
    • (2009) Molecular Ecology , vol.18 , pp. 3128-3150
    • Nielsen, E.E.1    Hemmer-Hansen, J.2    Larsen, P.F.3    Bekkevold, D.4
  • 45
    • 58749092473 scopus 로고    scopus 로고
    • Divergent selection and heterogeneous genomic divergence
    • Nosil, P., D. J. Funk, and D. Ortiz-Barrientos 2009. Divergent selection and heterogeneous genomic divergence. Molecular Ecology 18:375-402.
    • (2009) Molecular Ecology , vol.18 , pp. 375-402
    • Nosil, P.1    Funk, D.J.2    Ortiz-Barrientos, D.3
  • 46
    • 1642442709 scopus 로고    scopus 로고
    • Genetic assignment methods for the direct, real-time estimation of migration rate: a simulation-based exploration of accuracy and power
    • Paetkau, D., R. Slade, M. Burden, and A. Estoup 2004. Genetic assignment methods for the direct, real-time estimation of migration rate: a simulation-based exploration of accuracy and power. Molecular Ecology 13:55-65.
    • (2004) Molecular Ecology , vol.13 , pp. 55-65
    • Paetkau, D.1    Slade, R.2    Burden, M.3    Estoup, A.4
  • 47
    • 33644871292 scopus 로고    scopus 로고
    • Genalex 6: genetic analysis in Excel. Population genetic software for teaching and research
    • Peakall, R., and P. E. Smouse 2006. Genalex 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes 6:288-295.
    • (2006) Molecular Ecology Notes , vol.6 , pp. 288-295
    • Peakall, R.1    Smouse, P.E.2
  • 50
    • 34548089267 scopus 로고    scopus 로고
    • The genetic architecture of ecological speciation and the association with signatures of selection in natural lake whitefish (Coregonas sp. Salmonidae) species pairs
    • Rogers, S. M., and L. Bernatchez 2007. The genetic architecture of ecological speciation and the association with signatures of selection in natural lake whitefish (Coregonas sp. Salmonidae) species pairs. Molecular Biology and Evolution 24:1423-1438.
    • (2007) Molecular Biology and Evolution , vol.24 , pp. 1423-1438
    • Rogers, S.M.1    Bernatchez, L.2
  • 52
    • 33845599911 scopus 로고    scopus 로고
    • Genetic monitoring as a promising tool for conservation and management
    • (Personal edition)
    • Schwartz, M. K., G. Luikart, and R. S. Waples 2007. Genetic monitoring as a promising tool for conservation and management. Trends in Ecology & Evolution (Personal edition) 22:25-33.
    • (2007) Trends in Ecology & Evolution , vol.22 , pp. 25-33
    • Schwartz, M.K.1    Luikart, G.2    Waples, R.S.3
  • 55
    • 78650047970 scopus 로고    scopus 로고
    • Microsatellite genetic analysis of Baltic cod: a preliminary report
    • Dalhousie University, Halifax, NS.
    • Taggart, C. T., and D. Cook 1996. Microsatellite genetic analysis of Baltic cod: a preliminary report. Manuscript Report, Marine Gene Probe Laboratory. Dalhousie University, Halifax, NS.
    • (1996) Manuscript Report, Marine Gene Probe Laboratory
    • Taggart, C.T.1    Cook, D.2
  • 56
    • 24944471763 scopus 로고    scopus 로고
    • Genomic islands of speciation in Anopheles gambiae
    • Turner, T. L., M. W. Hahn, and S. V. Nuzhdin 2005. Genomic islands of speciation in Anopheles gambiae. PLoS Biology 3:e285.
    • (2005) PLoS Biology , vol.3
    • Turner, T.L.1    Hahn, M.W.2    Nuzhdin, S.V.3
  • 58
    • 16344384882 scopus 로고    scopus 로고
    • Expressed sequence tag (EST) linked microsatellites as a source of gene associated polymorphisms for detecting signatures of divergent selection in Atlantic salmon (Salmo salar L.)
    • Vasemägi, A., J. Nilsson, and C. R. Primmer 2005. Expressed sequence tag (EST) linked microsatellites as a source of gene associated polymorphisms for detecting signatures of divergent selection in Atlantic salmon (Salmo salar L.). Molecular Biology and Evolution 22:1067-1076.
    • (2005) Molecular Biology and Evolution , vol.22 , pp. 1067-1076
    • Vasemägi, A.1    Nilsson, J.2    Primmer, C.R.3
  • 59
    • 84255187761 scopus 로고    scopus 로고
    • Divergence hitchhiking and the spread of genomic isolation during ecological speciation-with-gene-flow
    • Via, S. 2012. Divergence hitchhiking and the spread of genomic isolation during ecological speciation-with-gene-flow. Philosophical Transactions of the Royal Society of London B: Biological Sciences 367:451-460.
    • (2012) Philosophical Transactions of the Royal Society of London B: Biological Sciences , vol.367 , pp. 451-460
    • Via, S.1
  • 60
    • 52649091697 scopus 로고    scopus 로고
    • The genetic mosaic suggests a new role for hitchhiking in ecological speciation
    • Via, S., and J. West 2008. The genetic mosaic suggests a new role for hitchhiking in ecological speciation. Molecular Ecology 17:4334-4345.
    • (2008) Molecular Ecology , vol.17 , pp. 4334-4345
    • Via, S.1    West, J.2
  • 61
    • 0002643007 scopus 로고
    • Evolutionarily significant units and the conservation of biological diversity under the Endangered Species Act
    • Waples, R. S. 1995. Evolutionarily significant units and the conservation of biological diversity under the Endangered Species Act. American Fisheries Society Symposium 17:8-27.
    • (1995) American Fisheries Society Symposium , vol.17 , pp. 8-27
    • Waples, R.S.1
  • 62
    • 0035677674 scopus 로고    scopus 로고
    • The genic view of the process of speciation
    • Wu, C. 2001. The genic view of the process of speciation. Journal of Evolutionary Biology 14:851-865.
    • (2001) Journal of Evolutionary Biology , vol.14 , pp. 851-865
    • Wu, C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.