Parallel genotypic adaptation: When evolution repeats itself

Genetica

Volumn 123, Issue 1-2, 2005, Pages 157-170

  Wood, Troy E ^a   Burke, John M ^b   Rieseberg, Loren H ^a  

^a INDIANA UNIVERSITY   (United States)

^b VANDERBILT UNIVERSITY   (United States)

Author keywords

Adaptation; Artificial selection; Convergent evolution; Experimental evolution; Homoplasy; Natural selection; Parallel evolution

Indexed keywords

ADAPTATION; CONFERENCE PAPER; DUPLICATE GENE; EVOLUTION; GENETICS; GENOTYPE; PHYLOGENY;

ADAPTATION, BIOLOGICAL; EVOLUTION; GENES, DUPLICATE; GENOTYPE; PHYLOGENY;

EID: 16344387924     PISSN: 00166707     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10709-003-2738-9     Document Type: Conference Paper

References (68)

1. D. Andreev M. Kreitman T.W. Phillips R.W. Beeman R.H. ffrench-Constant 1999 Multiple origins of cyclodiene insecticide resistance in Tribolium castaneum (Coleoptera: Tenbrionidae) J. Mol. Evol. 48 615 624
2. M. Barlow B.G. Hall 2002 Predicting evolutionary potential: in vitro evolution accurately reproduces natural evolution of the TEM β-lactamase Genetics 160 823 832
3. M. Barlow B.G. Hall 2003 Experimental prediction of the natural evolution of antibiotic resistance Genetics 163 1237 1241
4. P. Bernasconi A.R. Woodworth B.A. Rosen M.V. Subramanian D.L. Siehl 1995 A naturally occurring point mutation confers broad range tolerance to herbicides that target acetolactate synthase J. Biol. Chem. 270 17381 17385
5. E.G. Brown H. Liu L. Chang Kit S. Baird M. Nesrallah 2001 Pattern of mutation in the genome of influenza A virus on adaptation to increased virulence in the mouse lung: identification of functional themes Proc. Natl. Acad. Sci. U.S.A. 98 6883 6888
6. J.J. Bull M.R. Badgett H.A. Wichman J.P. Huelsenbeck D.M. Hillis A. Gulati C. Ho I.J. Molineux 1997 Exceptional convergent evolution in a virus Genetics 147 1497 1507
7. L. Chen A.L. DeVries C.-H.C. Cheng 1997 Convergent evolution of antifreeze glycoproteins in Antarctic notothenioid fish & Arctic cod Proc. Natl. Acad. Sci. U.S.A. 94 3817 3822
8. J.A. Coyne R. Lande 1985 The genetic basis of species differences in plants Am. Nat. 126 141 145
9. W.D. Crill H.A. Wichman J.J. Bull 2000 Evolutionary reversals during viral adaptation to alternating hosts Genetics 154 27 37
10. C.W. Cunningham K. Jeng J. Husti M. Badgett I.J. Molineux D.M. Hillis J.J. Bull 1997 Parallel molecular evolution of deletions & nonsense mutations in bacteriophage T7 Mol. Biol. Evol. 14 113 116
11. R.F. Doolittle 1994 Convergent evolution: the need to be explicit Trends Biochem. Sci. 19 15 18
12. S.R. Downie J.D. Palmer 1992 Use of chloroplast DNA rearrangements in reconstructing plant phylogeny P.S. Soltis D.E. Soltis J.J. Doyle Molecular Systematics of Plants Chapman & Hall N.Y
13. L. Elard A.M. Comes J.F. Humbert 1996 Sequences of B-tubulin cDNA from benzimidazole-susceptible and -resistant strains of Teladorsagia cirumcincta, a nematode parasite of small ruminants Mol. Biochem. Parasitol. 79 249 253
14. J.A. Endler 1986 Natural Seleciton in the Wild Princeton University Press Princeton
15. P.R. Ehrlich P.H. Raven 1969 Differentiation of populations Science 165 1228 1232
16. C.A. Fatokun D.I. Menancio-Hautea D. Danesh N.D. Young 1992 Evidence for orthologous seed weight genes in cowpea & mung bean based on RFLP mapping Genetics 132 841 846
17. R.H. ffrench-Constant 1994 The molecular & population genetics of cyclodiene insecticide resistance Insect Bicochem. Mol. Biol. 24 335 345
18. P.L. Forey C.J. Humphries I.L. Kitching R.W. Scotland D.J. Siebert D.M. Williams 1992 Cladistics Oxford University Press NY
19. C.J. Goodnight 2000 Quantitative trait loci & gene interaction: the quantitative genetics of metapopulations Heredity 84 587 598
20. L.D. Gottlieb 1984 Genetics & morphological evolution in plants Am. Nat. 123 681 709
21. V. Grant 1980 Gene flow and the homogeneity of species populations Biol. Zentralbl. 99 157 169
22. J.B.S. Haldane 1932 The Causes of Evolution Longmans Green London
23. K.W. Hilu 1983 The role of single-gene mutations in the evolution of flowering plants Evol. Biol. 36 97 128
24. F.Y. Hu D.Y. Tao E. Sacks B.Y. Fu P. Xu J. Li Y. Yang K. McNally G.S. Khush A.H. Paterson Z.-K. Li 2003 Convergent evolution of perenniality in rice & sorghum Proc. Natl. Acad. Sci. U.S.A. 100 4050 4054
25. U. Johanson J. West C. Lister S. Michaels R. Amasino C. Dean 2001 Molecular analysis of FRIGIDA, a major determinant of natural variation in Arabidopsis flowering time Science 290 344 347
26. E. Jouvin-Marche A. Cuddihy S. Butler J.N. Hansen W.M. Fitch S. Rudikoff 1988 Modern Evolution of a single-copy gene: the immunoglobulin Ck locus in wild mice Mol. Biol. Evol. 5 500 511
27. N. Kermarrec F. Roubinet P.-A. Apoil A. Blancher 1999 Comparison of allele O sequences of the human & non-human primate ABO system Immunogenetics 49 517 526
28. K. Kriener C. O'hUigin H. Tichy J. Klein 2000 Convergent evolution of major histocompatibility complex molecules in humans & New World monkeys Immunogenetics 51 169 178
29. R. Lande 1983 The response to selection on major & minor mutations affecting a metrical trait Heredity 50 47 65
30. B.R. Levin V. Perrot N. Walker 2000 Compensatory mutations, antibiotic resistance & the population genetics of adaptive evolution in bacteria Genetics 154 985 997
31. D.A. Levin 2000 The Origin, Expansion, & Demise of Plant Species Oxford University Press NY
32. D.A. Levin 2001 The recurrent origin of plant races & species Syst. Bot. 26 197 204
33. H. Liao T. McKenzie R. Hageman 1986 Isolation of a thermostable enzyme variant by cloning & selection in a thermophile Proc. Natl. Acad. Sci. U.S.A. 83 576 580
34. A.S. Low F.M. MacKenzie I.M. Gould I.R. Booth 2001 Protected environments allow parallel evolution of a bacterial pathogen in a patient subjected to long-term antibiotic therapy Mol. Microbiol. 42 619 630
35. M. Lynch J.S. Conery 2000 The evolutionary fate & consequences of duplicate genes Science 290 1151 1155
36. I. Malcuit W. De Jong D.C. Baulcombe D.C. Shields T.A. Kavanagh 2000 Acquisition of multiple virulence/avirulence determinants by potato virus X (PVX) has occurred through convergent evolution rather than through recombination Virus Genes 20 165 172
37. R. Mauricio 2001 Mapping quantitative trait loci in plants: uses & caveats for evolutionary biology Nat. Rev. Genet. 2 370 381
38. A. Molla M. Korneyeva Q. Gao S. Vasavanonda P.J. Schipper 1996 Ordered accumulation of mutations in HIV protease confers resistance to ritonavir Nat. Med. 2 760 766
39. A. Morris J.K. Bowmaker D.M. Hunt 1993 The molecular basis of a spectral shift in the rhodopsins of two species of squid from different photic environments Proc. R. Soc. Lond. Ser. B Biol. Sci. 254 233 240
40. S. Ohno 1970 Evolution by Gene Duplication Springer Berlin
41. C. O'hUigin A. Sato J. Klein 1997 Evidence for convergent evolution of A & B blood group antigens in primates Hum. Genet. 101 141 148
42. E. Palacios L. Digilio H.M. McClure Z. Chen P.A. Marx M.A. Goldsmith R.M. Grant 1998 Parallel evolution of CCR5-null phenotypes in humans & in a natural host of simian immunodeficiency virus Curr. Biol. 8 943 946
43. A.H. Paterson Y.-R. Lin Z. Li K.F. Schertz J.F. Doebley S.R.M. Pinson S.-C. Liu J.W. Stansel J.E. Irivine 1995 Convergent domestication of cereal crops by independent mutations at corresponding genetic loci Science 269 1714 1718
44. S.D. Reid C.J. Herbelin A.C. Bumbaugh R.K. Selander T.S. Whittam 2000 Parallel evolution of virulence in pathogenic Escherichia coli Nature 406 64 67
45. W.R. Rice E.E. Hostert 1993 Laboratory experiments on speciation: what have we learned in 40 years Evolution 47 1637 1653
46. M.M. Riehle A.F. Bennett A.D. Long 2001 Genetic architecture of thermal adaptation in Escherichia coli Proc. Natl. Acad. Sci. U.S.A. 98 525 530
47. L.H. Rieseberg B. Sinervo C.R. Linder M.C. Ungerer D.M. Arias 1996 Role of gene interactions in hybrid speciation: evidence from ancient & experimental hybrids Science 272 741 745
48. L.H. Rieseberg J.M. Burke 2001 The biological reality of species: gene flow, selection, & collective evolution Taxon 50 47 67
49. A.E. Romero-Herrera H. Lehmann K.A. Josey A.E. Friday 1978 On the evolution of myoglobin Philos. Trans. R Soc. Lond. Ser. B Biol. Sci. 283 61 163
50. H.D. Rundle L. Nagel J.W. Boughman D. Schluter 2000 Natural selection & parallel speciation in sympatric sticklebacks Science 287 306 308
51. N. Saitou F. Yamamoto 1997 Evolution of primate ABO blood group genes & their homologous genes Mol. Biol. Evol. 14 399 411
52. H. Schat R. Voous E. Kuiper 1996 Identical major gene loci for heavy metal tolerances that have independently evolved in different local populations & subspecies of Silene vulagaris Evolution 50 1888 1895
53. D. Schluter 1996 Adaptive radiation along genetic lines of least resistance Evolution 50 1766 1774
54. D. Schluter 2001 Ecology & the origin of species Trends Ecol. Evol. 16 372 380
55. J. Shafqat M. El-Ahmad O. Danielsson M.C. Martinez B. Persson X. Pares H. Jornvall 1996 Pea formaldehyde-active class III alcohol dehydrogenase: common derivation of the plant & animal forms but not of the corresponding ethanol-active forms (classes I & P) Proc. Natl. Acad. Sci. U.S.A. 93 5595 5599
56. S.-K. Shyue D. Hewett-Emmett H.G. Sperling D.M. Hunt J.K. Bowmaker J.D. Mollon W.-H. Li 1995 Adaptive evolution of color vision genes in higher primates Science 269 1265 1267
57. G.G. Simpson 1961 Principles of Animal Taxonomy Columbia University Press New York
58. P.S. Soltis D.S. Soltis 1991 Multiple origins of the allotetraploid Tragopogon mirus (Compositae): rDNA evidence Syst. Bot. 16 407 413
59. C.-B. Stewart J.W. Schilling A.C. Wilson 1987 Adaptive evolution in the stomach lysozymes of foregut fermenters Nature 330 401 404
60. E. Sucena I. Delon I. Jones F. Payre D.L. Stern 2003 Regulatory evolution of shavenbaby/ovo underlies multiple cases of morphological parallelism Nature 424 935 938
61. S.D. Tanksley 1993 Mapping polygenes Annual Rev. Genet. 27 205 233
62. A.R. Templeton 1989 The meaning of species & speciation: a genetic perspective D. Otte J.A. Endler Speciation & Its Consequences Sunderland MA 3 27
63. M. Ungerer 2000 Selection, genetic envrionment & adaptive evolution: an analysis of microevolutionary dynamics in experimental plant populations Indiana Univ. Bloomington Ph.D. dissert.
64. M.J. Wade C.J. Goodnight 1998 Perspective: the theories of Fisher & Wright in the context of metapopulations: when nature does many small experiments Evolution 52 1537 1553
65. R.S. Wells 1996 Excessive homoplasy in an evolutionarily constrained protein Proc. R. Soc. Lond. Ser. B Biol. Sci. 263 393 400
66. H.A. Wichman M.R. Badgett L.A. Scott C.M. Boulianne J.J. Bull 2001 Different trajectories of parallel evolution during viral adaptation Science 285 422 424
67. R. Yokoyama S. Yokoyama 1990 Convergent evolution of the red- & green-like visual pigment genes in fish, Astyanax fasciatus & human Proc. Natl. Acad. Sci. U.S.A. 87 9315 9318
68. J. Zhang S. Kumar 1997 Detection of convergent & parallel evolution at the amino acid sequence level Mol. Biol. Evol. 14 527 536