-
1
-
-
84857089653
-
Single-nucleotide polymorphisms (SNPs) under diversifying selection provide increased accuracy and precision in mixed-stock analyses of sockeye salmon from the Copper River, Alaska
-
Ackerman, M. W., C. Habicht, and L. W. Seeb 2011. Single-nucleotide polymorphisms (SNPs) under diversifying selection provide increased accuracy and precision in mixed-stock analyses of sockeye salmon from the Copper River, Alaska. Transactions of the American Fisheries Society 140:865-881.
-
(2011)
Transactions of the American Fisheries Society
, vol.140
, pp. 865-881
-
-
Ackerman, M.W.1
Habicht, C.2
Seeb, L.W.3
-
2
-
-
84897828824
-
-
ADF&G. Chinook salmon stock assessment and research plan [online]. Alaska Department of Fish and Game, Special Publication No. 13-01. Available from
-
ADF&G. 2013. Chinook salmon stock assessment and research plan [online]. Alaska Department of Fish and Game, Special Publication No. 13-01. Available from http://www.adfg.alaska.gov/static/home/news/hottopics/pdfs/chinook_research_plan.pdf (accessed on 7 March 2013).
-
(2013)
-
-
-
3
-
-
0002590589
-
Polyploidy and the evolution of salmonid fishes
-
In B. J. Turner, eds. Plenum Press, New York.
-
Allendorf, F., and G. H. Thorgaard 1984. Polyploidy and the evolution of salmonid fishes. In B. J. Turner, eds. The Evolutionary Genetics of Fishes, pp. 1-53. Plenum Press, New York.
-
(1984)
The Evolutionary Genetics of Fishes
, pp. 1-53
-
-
Allendorf, F.1
Thorgaard, G.H.2
-
5
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman 1990. Basic local alignment search tool. Journal of Molecular Biology 215:403-410.
-
(1990)
Journal of Molecular Biology
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
6
-
-
77954260692
-
Assessing the power of informative subsets of loci for population assignment: standard methods are upwardly biased
-
Anderson, E. C. 2010. Assessing the power of informative subsets of loci for population assignment: standard methods are upwardly biased. Molecular Ecology Resources 10:701-710.
-
(2010)
Molecular Ecology Resources
, vol.10
, pp. 701-710
-
-
Anderson, E.C.1
-
7
-
-
84857508494
-
Genomic toolboxes for conservation biologists
-
Angeloni, F., N. Wagemaker, P. Vergeer, and J. Ouborg 2012. Genomic toolboxes for conservation biologists. Evolutionary Applications 5:130-143.
-
(2012)
Evolutionary Applications
, vol.5
, pp. 130-143
-
-
Angeloni, F.1
Wagemaker, N.2
Vergeer, P.3
Ouborg, J.4
-
8
-
-
77952096515
-
Perspective: conservation genetics enters the genomics era
-
Avise, J. C. 2010. Perspective: conservation genetics enters the genomics era. Conservation Genetics 11:665-669.
-
(2010)
Conservation Genetics
, vol.11
, pp. 665-669
-
-
Avise, J.C.1
-
9
-
-
54449098752
-
Rapid SNP discovery and genetic mapping using sequenced RAD markers
-
Baird, N. A., P. D. Etter, T. S. Atwood, M. C. Currey, A. L. Shiver, Z. A. Lewis, E. U. Selker et al. 2008. Rapid SNP discovery and genetic mapping using sequenced RAD markers. PLoS ONE 3:e3376.
-
(2008)
PLoS ONE
, vol.3
-
-
Baird, N.A.1
Etter, P.D.2
Atwood, T.S.3
Currey, M.C.4
Shiver, A.L.5
Lewis, Z.A.6
Selker, E.U.7
-
10
-
-
84897854308
-
-
and. 2005 Annual management report for Norton Sound, Port Clarence, and Kotzebue [online]. Alaska Department of Fish and Game, Fishery Management Report No. 07-32.
-
Banducci, A., T. Kohler, J. Soong, and J. Menard 2007. 2005 Annual management report for Norton Sound, Port Clarence, and Kotzebue [online]. Alaska Department of Fish and Game, Fishery Management Report No. 07-32. http://www.adfg.alaska.gov/FedAidPDFs/fmr07-32.pdf (accessed on 30 January 2013).
-
(2007)
-
-
Banducci, A.1
Kohler, T.2
Soong, J.3
Menard, J.4
-
11
-
-
79955609628
-
Linkage mapping and comparative genomics using next-generation RAD sequencing of a non-model organism
-
Baxter, S. W., J. W. Davey, J. S. Johnston, A. M. Shelton, D. G. Heckel, C. D. Jiggins, and M. L. Blaxter 2011. Linkage mapping and comparative genomics using next-generation RAD sequencing of a non-model organism. PLoS ONE 6:e19315.
-
(2011)
PLoS ONE
, vol.6
-
-
Baxter, S.W.1
Davey, J.W.2
Johnston, J.S.3
Shelton, A.M.4
Heckel, D.G.5
Jiggins, C.D.6
Blaxter, M.L.7
-
12
-
-
84872457205
-
SNP-array reveals genome-wide patterns of geographical and potential adaptive divergence across the natural range of Atlantic salmon (Salmo salar)
-
Bourret, V., M. P. Kent, C. R. Primmer, A. Vasemägi, S. Karlsson, K. Hindar, P. McGinnity et al. 2013. SNP-array reveals genome-wide patterns of geographical and potential adaptive divergence across the natural range of Atlantic salmon (Salmo salar). Molecular Ecology 22:532-551.
-
(2013)
Molecular Ecology
, vol.22
, pp. 532-551
-
-
Bourret, V.1
Kent, M.P.2
Primmer, C.R.3
Vasemägi, A.4
Karlsson, S.5
Hindar, K.6
McGinnity, P.7
-
13
-
-
84875647729
-
Genomic islands of divergence and their consequences for the resolution of spatial structure in an exploited marine fish
-
Bradbury, I. R., S. Hubert, B. Higgins, S. Bowman, T. Borza, I. G. Paterson, P. V. R. Snelgrove et al. 2013. Genomic islands of divergence and their consequences for the resolution of spatial structure in an exploited marine fish. Evolutionary Applications 6:450-461.
-
(2013)
Evolutionary Applications
, vol.6
, pp. 450-461
-
-
Bradbury, I.R.1
Hubert, S.2
Higgins, B.3
Bowman, S.4
Borza, T.5
Paterson, I.G.6
Snelgrove, P.V.R.7
-
14
-
-
84875231446
-
The impact of transposable elements in environmental adaptation
-
Casacuberta, E., and J. González 2013. The impact of transposable elements in environmental adaptation. Molecular Ecology 22:1503-1517.
-
(2013)
Molecular Ecology
, vol.22
, pp. 1503-1517
-
-
Casacuberta, E.1
González, J.2
-
15
-
-
77957666629
-
A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus)
-
Castano-Sanchez, C., K. Fuji, A. Ozaki, O. Hasegawa, T. Sakamoto, K. Morishima, I. Nakayama et al. 2010. A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus). BMC Genomics 11:554.
-
(2010)
BMC Genomics
, vol.11
, pp. 554
-
-
Castano-Sanchez, C.1
Fuji, K.2
Ozaki, A.3
Hasegawa, O.4
Sakamoto, T.5
Morishima, K.6
Nakayama, I.7
-
16
-
-
84884299558
-
Stacks: building and genotyping loci de novo from short-read sequences
-
Catchen, J. M., A. H. Amores, P. W. Cresko, and J. H. Postlethwait 2011. Stacks: building and genotyping loci de novo from short-read sequences. G3 Genes Genomes Genetics 1:171-182.
-
(2011)
G3 Genes Genomes Genetics
, vol.1
, pp. 171-182
-
-
Catchen, J.M.1
Amores, A.H.2
Cresko, P.W.3
Postlethwait, J.H.4
-
17
-
-
84877794253
-
Exploiting genetic diversity to balance conservation and harvest of migratory salmon
-
Dann, T. H., C. Habicht, T. T. Baker, and J. E. Seeb 2013. Exploiting genetic diversity to balance conservation and harvest of migratory salmon. Canadian Journal of Fisheries and Aquatic Sciences 70:785-793.
-
(2013)
Canadian Journal of Fisheries and Aquatic Sciences
, vol.70
, pp. 785-793
-
-
Dann, T.H.1
Habicht, C.2
Baker, T.T.3
Seeb, J.E.4
-
18
-
-
84890151430
-
NeEstimator v2.0: re-implementation of software for the estimation of contemporary effective population size (Ne) from genetic data
-
Do, C., R. S. Waples, D. Peel, G. M. Macbeth, B. J. Tillett, and J. R. Ovenden 2014. NeEstimator v2.0: re-implementation of software for the estimation of contemporary effective population size (Ne) from genetic data. Molecular Ecology Resources 41:209-214.
-
(2014)
Molecular Ecology Resources
, vol.41
, pp. 209-214
-
-
Do, C.1
Waples, R.S.2
Peel, D.3
Macbeth, G.M.4
Tillett, B.J.5
Ovenden, J.R.6
-
19
-
-
77952057524
-
A gene-based SNP linkage map for Pacific white shrimp, Litopenaeus vannamei
-
Du, Z. Q., D. C. Ciobanu, S. K. Onteru, D. Gorbach, A. J. Mileham, G. Jaramillo, and M. F. Rothschild 2010. A gene-based SNP linkage map for Pacific white shrimp, Litopenaeus vannamei. Animal Genetics 41:286-294.
-
(2010)
Animal Genetics
, vol.41
, pp. 286-294
-
-
Du, Z.Q.1
Ciobanu, D.C.2
Onteru, S.K.3
Gorbach, D.4
Mileham, A.J.5
Jaramillo, G.6
Rothschild, M.F.7
-
20
-
-
79954584270
-
Local de novo assembly of RAD paired-end contigs using short sequencing reads
-
Etter, P. D., J. L. Preston, S. Bassham, W. A. Cresko, and E. A. Johnson 2011. Local de novo assembly of RAD paired-end contigs using short sequencing reads. PLoS ONE 6:e18561.
-
(2011)
PLoS ONE
, vol.6
-
-
Etter, P.D.1
Preston, J.L.2
Bassham, S.3
Cresko, W.A.4
Johnson, E.A.5
-
21
-
-
79751509492
-
Short reads and nonmodel species: exploring the complexities of next-generation sequence assembly and SNP discovery in the absence of a reference genome
-
Everett, M. V., E. D. Grau, and J. E. Seeb 2011. Short reads and nonmodel species: exploring the complexities of next-generation sequence assembly and SNP discovery in the absence of a reference genome. Molecular Ecology Resources 11:93-108.
-
(2011)
Molecular Ecology Resources
, vol.11
, pp. 93-108
-
-
Everett, M.V.1
Grau, E.D.2
Seeb, J.E.3
-
22
-
-
84866840599
-
Meiotic maps of sockeye salmon derived from massively parallel DNA sequencing
-
Everett, M. V., M. R. Miller, and J. E. Seeb 2012. Meiotic maps of sockeye salmon derived from massively parallel DNA sequencing. BMC Genomics 13:521.
-
(2012)
BMC Genomics
, vol.13
, pp. 521
-
-
Everett, M.V.1
Miller, M.R.2
Seeb, J.E.3
-
23
-
-
84897872674
-
Detection and mapping of QTL for temperature tolerance and body size in Chinook salmon (Oncorhynchus tshawytscha) using genotyping by sequencing
-
DOI: 10.1111/eva.12147.
-
Everett, M. V., and J. E. Seeb 2014. Detection and mapping of QTL for temperature tolerance and body size in Chinook salmon (Oncorhynchus tshawytscha) using genotyping by sequencing. Evolutionary Applications DOI: 10.1111/eva.12147.
-
(2014)
Evolutionary Applications
-
-
Everett, M.V.1
Seeb, J.E.2
-
24
-
-
77953032930
-
Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows
-
Excoffier, L., and H. E. L. Lischer 2010. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources 10:564-567.
-
(2010)
Molecular Ecology Resources
, vol.10
, pp. 564-567
-
-
Excoffier, L.1
Lischer, H.E.L.2
-
25
-
-
70349506039
-
Detecting loci under selection in a hierarchically structured population
-
Excoffier, L., T. Hofer, and M. Foll 2009. Detecting loci under selection in a hierarchically structured population. Heredity 103:285-298.
-
(2009)
Heredity
, vol.103
, pp. 285-298
-
-
Excoffier, L.1
Hofer, T.2
Foll, M.3
-
26
-
-
27844452150
-
Distribution, migration pathways, and size of western Alaska juvenile salmon along the eastern Bering Sea Shelf
-
Farley, E. V., J. M. Murphy, B. W. Wing, J. H. Moss, and A. Middleton 2005. Distribution, migration pathways, and size of western Alaska juvenile salmon along the eastern Bering Sea Shelf. Alaska Fishery Research Bulletin 11:15-26.
-
(2005)
Alaska Fishery Research Bulletin
, vol.11
, pp. 15-26
-
-
Farley, E.V.1
Murphy, J.M.2
Wing, B.W.3
Moss, J.H.4
Middleton, A.5
-
27
-
-
23444437361
-
Genetics and extinction
-
Frankham, R. 2005. Genetics and extinction. Biological Conservation 126:131-140.
-
(2005)
Biological Conservation
, vol.126
, pp. 131-140
-
-
Frankham, R.1
-
28
-
-
84865552514
-
Harnessing genomics for delineating conservation units
-
Funk, W. C., J. K. McKay, P. A. Hohenlohe, and F. W. Allendorf 2012. Harnessing genomics for delineating conservation units. Trends in Ecology & Evolution 27:489-496.
-
(2012)
Trends in Ecology & Evolution
, vol.27
, pp. 489-496
-
-
Funk, W.C.1
McKay, J.K.2
Hohenlohe, P.A.3
Allendorf, F.W.4
-
29
-
-
84878438280
-
Mapping phenotypic, expression and transmission ratio distortion QTL using RAD markers in the Lake Whitefish (Coregonus clupeaformis)
-
Gagnaire, P.-A., E. Normandeau, S. A. Pavey, and L. Bernatchez 2013. Mapping phenotypic, expression and transmission ratio distortion QTL using RAD markers in the Lake Whitefish (Coregonus clupeaformis). Molecular Ecology 22:3036-3048.
-
(2013)
Molecular Ecology
, vol.22
, pp. 3036-3048
-
-
Gagnaire, P.-A.1
Normandeau, E.2
Pavey, S.A.3
Bernatchez, L.4
-
30
-
-
84886310513
-
Recent physical connections may explain weak genetic structure in western Alaskan chum salmon (Oncorhynchus keta) populations
-
Garvin, M. R., C. M. Kondzela, P. Martin, B. Finney, J. R. Guyon, W. D. Templin, S. Gilk-Baumer et al. 2013. Recent physical connections may explain weak genetic structure in western Alaskan chum salmon (Oncorhynchus keta) populations. Ecology and Evolution 3:2362-2377.
-
(2013)
Ecology and Evolution
, vol.3
, pp. 2362-2377
-
-
Garvin, M.R.1
Kondzela, C.M.2
Martin, P.3
Finney, B.4
Guyon, J.R.5
Templin, W.D.6
Gilk-Baumer, S.7
-
32
-
-
79551599953
-
Genotype calling and mapping of multisite variants using an Atlantic salmon iSelect SNP array
-
Gidskehaug, L., M. Kent, B. J. Hayes, and S. Lien 2011. Genotype calling and mapping of multisite variants using an Atlantic salmon iSelect SNP array. Bioinformatics 27:303-310.
-
(2011)
Bioinformatics
, vol.27
, pp. 303-310
-
-
Gidskehaug, L.1
Kent, M.2
Hayes, B.J.3
Lien, S.4
-
33
-
-
84892839187
-
Salmon bycatch management in the Bering Sea walleye pollock fishery: threats and opportunities for western Alaska
-
Gisclair, B. R. 2009. Salmon bycatch management in the Bering Sea walleye pollock fishery: threats and opportunities for western Alaska. American Fisheries Society Symposium 70:799-816.
-
(2009)
American Fisheries Society Symposium
, vol.70
, pp. 799-816
-
-
Gisclair, B.R.1
-
34
-
-
84892892704
-
Development and application of genomic tools to the restoration of green abalone in southern California
-
Gruenthal, K. M., D. A. Witting, T. Ford, M. J. Neuman, J. P. Williams, D. J. Pondella II, A. Bird et al. 2014. Development and application of genomic tools to the restoration of green abalone in southern California. Conservation Genetics 15:109-121.
-
(2014)
Conservation Genetics
, vol.15
, pp. 109-121
-
-
Gruenthal, K.M.1
Witting, D.A.2
Ford, T.3
Neuman, M.J.4
Williams, J.P.5
Pondella, D.J.6
Bird, A.7
-
35
-
-
79955817281
-
Understanding and estimating effective population size for practical application in marine species management
-
Hare, M. P., L. Nunney, M. K. Schwartz, D. E. Ruzzante, M. Burford, R. S. Waples, K. Ruegg et al. 2011. Understanding and estimating effective population size for practical application in marine species management. Conservation Biology 25:438-449.
-
(2011)
Conservation Biology
, vol.25
, pp. 438-449
-
-
Hare, M.P.1
Nunney, L.2
Schwartz, M.K.3
Ruzzante, D.E.4
Burford, M.5
Waples, R.S.6
Ruegg, K.7
-
36
-
-
84878438897
-
Genome-wide association reveals genetic basis for the propensity to migrate in wild populations of rainbow and steelhead trout
-
Hecht, B. C., N. R. Campbell, D. E. Holecek, and S. R. Narum 2013. Genome-wide association reveals genetic basis for the propensity to migrate in wild populations of rainbow and steelhead trout. Molecular Ecology 22:3061-3076.
-
(2013)
Molecular Ecology
, vol.22
, pp. 3061-3076
-
-
Hecht, B.C.1
Campbell, N.R.2
Holecek, D.E.3
Narum, S.R.4
-
37
-
-
84876792677
-
A genomic island linked to ecotype divergence in Atlantic cod
-
Hemmer-Hansen, J., E. E. Nielsen, N. O. Therkildsen, M. I. Taylor, R. Ogden, A. J. Geffen, D. Bekkevold et al. 2013. A genomic island linked to ecotype divergence in Atlantic cod. Molecular Ecology 22:2653-2667.
-
(2013)
Molecular Ecology
, vol.22
, pp. 2653-2667
-
-
Hemmer-Hansen, J.1
Nielsen, E.E.2
Therkildsen, N.O.3
Taylor, M.I.4
Ogden, R.5
Geffen, A.J.6
Bekkevold, D.7
-
38
-
-
84878440983
-
Population genomics of Pacific lamprey: adaptive variation in a highly dispersive species
-
Hess, J. E., N. R. Campbell, D. A. Close, M. F. Docker, and S. R. Narum 2013. Population genomics of Pacific lamprey: adaptive variation in a highly dispersive species. Molecular Ecology 22:2898-2916.
-
(2013)
Molecular Ecology
, vol.22
, pp. 2898-2916
-
-
Hess, J.E.1
Campbell, N.R.2
Close, D.A.3
Docker, M.F.4
Narum, S.R.5
-
39
-
-
0038651995
-
Biocomplexity and fisheries sustainability
-
Hilborn, R., T. P. Quinn, D. E. Schindler, and D. E. Rogers 2003. Biocomplexity and fisheries sustainability. Proceedings of the National Academy of Sciences of the United States of America 100:6564-6568.
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, pp. 6564-6568
-
-
Hilborn, R.1
Quinn, T.P.2
Schindler, D.E.3
Rogers, D.E.4
-
40
-
-
0019771734
-
Estimation of effective population-size from data on linkage disequilibrium
-
Hill, W. G. 1981. Estimation of effective population-size from data on linkage disequilibrium. Genetical Research 38:209-216.
-
(1981)
Genetical Research
, vol.38
, pp. 209-216
-
-
Hill, W.G.1
-
41
-
-
77649219524
-
Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags
-
Hohenlohe, P. A., S. Bassham, P. D. Etter, N. Stiffler, E. A. Johnson, and W. A. Cresko 2010. Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags. PLoS Genetics 6 :e1000862.
-
(2010)
PLoS Genetics
, vol.6
-
-
Hohenlohe, P.A.1
Bassham, S.2
Etter, P.D.3
Stiffler, N.4
Johnson, E.A.5
Cresko, W.A.6
-
42
-
-
84878460644
-
Genomic patterns of introgression in rainbow and westslope cutthroat trout illuminated by overlapping paired-end RAD sequencing
-
Hohenlohe, P. A., M. D. Day, S. J. Amish, M. R. Miller, N. Kamps-Hughes, M. C. Boyer, C. C. Muhlfeld et al. 2013. Genomic patterns of introgression in rainbow and westslope cutthroat trout illuminated by overlapping paired-end RAD sequencing. Molecular Ecology 22:3002-3013.
-
(2013)
Molecular Ecology
, vol.22
, pp. 3002-3013
-
-
Hohenlohe, P.A.1
Day, M.D.2
Amish, S.J.3
Miller, M.R.4
Kamps-Hughes, N.5
Boyer, M.C.6
Muhlfeld, C.C.7
-
43
-
-
84897906184
-
-
and. Yukon River Chinook salmon stock status and action plan 2010; a report to the Alaska Board of Fisheries. Alaska Department of Fish and Game, Special Publication No. 09-26. Available from
-
Howard, K. G., S. J. Hayes, and D. F. Evenson 2009. Yukon River Chinook salmon stock status and action plan 2010; a report to the Alaska Board of Fisheries. Alaska Department of Fish and Game, Special Publication No. 09-26. Available from http://www.sf.adfg.state.ak.us/FedAidpdfs/Sp09-26.pdf (accessed on 6 May 2012).
-
(2009)
-
-
Howard, K.G.1
Hayes, S.J.2
Evenson, D.F.3
-
44
-
-
77951241851
-
Development of a SNP resource and a genetic linkage map for Atlantic cod (Gadus morhua)
-
Hubert, S., B. Higgins, T. Borza, and S. Bowman 2010. Development of a SNP resource and a genetic linkage map for Atlantic cod (Gadus morhua). BMC Genomics 11:191.
-
(2010)
BMC Genomics
, vol.11
, pp. 191
-
-
Hubert, S.1
Higgins, B.2
Borza, T.3
Bowman, S.4
-
45
-
-
44349095887
-
adegenet: a R package for the multivariate analysis of genetic markers
-
Jombart, T. 2008. adegenet: a R package for the multivariate analysis of genetic markers. Bioinformatics 24:1403-1405.
-
(2008)
Bioinformatics
, vol.24
, pp. 1403-1405
-
-
Jombart, T.1
-
46
-
-
33646883712
-
ML-RELATE: a computer program for maximum likelihood estimation of relatedness and relationship
-
Kalinowski, S. T., A. P. Wagner, and M. L. Taper 2006. ML-RELATE: a computer program for maximum likelihood estimation of relatedness and relationship. Molecular Ecology Notes 6:576-579.
-
(2006)
Molecular Ecology Notes
, vol.6
, pp. 576-579
-
-
Kalinowski, S.T.1
Wagner, A.P.2
Taper, M.L.3
-
47
-
-
84874005851
-
Single-nucleotide polymorphisms reveal distribution and migration of Chinook salmon (Oncorhynchus tshawytscha) in the Bering Sea and North Pacific Ocean
-
Larson, W. A., F. M. Utter, K. W. Myers, W. D. Templin, J. E. Seeb, C. M. Guthrie, A. V. Bugaev et al. 2013. Single-nucleotide polymorphisms reveal distribution and migration of Chinook salmon (Oncorhynchus tshawytscha) in the Bering Sea and North Pacific Ocean. Canadian Journal of Fisheries and Aquatic Sciences 70:128-141.
-
(2013)
Canadian Journal of Fisheries and Aquatic Sciences
, vol.70
, pp. 128-141
-
-
Larson, W.A.1
Utter, F.M.2
Myers, K.W.3
Templin, W.D.4
Seeb, J.E.5
Guthrie, C.M.6
Bugaev, A.V.7
-
48
-
-
84897858142
-
-
Norton Sound and Kotzebue Sound management area salmon catch and escapement report, 1995 [online]. Alaska Department of Fish and Game, Regional Information Report No. 3A96-23. Available from (accessed on 30 January 2013).
-
Lingnau, T. 1996. Norton Sound and Kotzebue Sound management area salmon catch and escapement report, 1995 [online]. Alaska Department of Fish and Game, Regional Information Report No. 3A96-23. Available from http://www.adfg.alaska.gov/FedAidpdfs/RIR.3A.1996.23.pdf (accessed on 30 January 2013).
-
(1996)
-
-
Lingnau, T.1
-
49
-
-
84897881390
-
-
and. 2010 Chinook salmon sonar enumeration on the Big Salmon River [online]. Prepared for the Yukon River Panel Restoration and Enhancement Fund, CRE-41-10.
-
Mercer, B., and J. K. Wilson 2011. 2010 Chinook salmon sonar enumeration on the Big Salmon River [online]. Prepared for the Yukon River Panel Restoration and Enhancement Fund, CRE-41-10. http://yukonriverpanel.com/salmon/wp-content/uploads/2011/04/cre-41-10-big-salmon-sonar-final-report.pdf (accessed on 30 January 2012).
-
(2011)
-
-
Mercer, B.1
Wilson, J.K.2
-
50
-
-
84855456602
-
A conserved haplotype controls parallel adaptation in geographically distant salmonid populations
-
Miller, M. R., J. P. Brunelli, P. A. Wheeler, S. Liu, C. E. III Rexroad, Y. Palti, C. Q. Doe et al. 2012. A conserved haplotype controls parallel adaptation in geographically distant salmonid populations. Molecular Ecology 21:237-249.
-
(2012)
Molecular Ecology
, vol.21
, pp. 237-249
-
-
Miller, M.R.1
Brunelli, J.P.2
Wheeler, P.A.3
Liu, S.4
Rexroad, C.E.5
Palti, Y.6
Doe, C.Q.7
-
51
-
-
80455126001
-
Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems
-
Minoche, A. E., J. C. Dohm, and H. Himmelbauer 2011. Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems. Genome Biology 12 :R112.
-
(2011)
Genome Biology
, vol.12
-
-
Minoche, A.E.1
Dohm, J.C.2
Himmelbauer, H.3
-
52
-
-
79951755977
-
Stock-structured distribution of western Alaska and Yukon juvenile Chinook salmon (Oncorhynchus tshawytscha) from United States BASIS surveys, 2002-2007
-
Murphy, J. M., W. D. Templin, E. V. J. Farley, and J. E. Seeb 2009. Stock-structured distribution of western Alaska and Yukon juvenile Chinook salmon (Oncorhynchus tshawytscha) from United States BASIS surveys, 2002-2007. North Pacific Anadromous Fish Commission Bulletin 5:51-59.
-
(2009)
North Pacific Anadromous Fish Commission Bulletin
, vol.5
, pp. 51-59
-
-
Murphy, J.M.1
Templin, W.D.2
Farley, E.V.J.3
Seeb, J.E.4
-
53
-
-
84878427471
-
Genotyping-by-sequencing in ecological and conservation genomics
-
Narum, S. R., C. A. Buerkle, J. W. Davey, M. R. Miller, and P. A. Hohenlohe 2013. Genotyping-by-sequencing in ecological and conservation genomics. Molecular Ecology 22:2841-2847.
-
(2013)
Molecular Ecology
, vol.22
, pp. 2841-2847
-
-
Narum, S.R.1
Buerkle, C.A.2
Davey, J.W.3
Miller, M.R.4
Hohenlohe, P.A.5
-
54
-
-
0035687277
-
A new approach to prioritizing marine fish and shellfish populations for conservation
-
Nielsen, E. E., and E. Kenchington 2001. A new approach to prioritizing marine fish and shellfish populations for conservation. Fish and Fisheries (Oxford) 2:328-343.
-
(2001)
Fish and Fisheries (Oxford)
, vol.2
, pp. 328-343
-
-
Nielsen, E.E.1
Kenchington, E.2
-
55
-
-
68149105752
-
Population genomics of marine fishes: identifying adaptive variation in space and time
-
Nielsen, E. E., J. Hemmer-Hansen, P. F. Larsen, and D. Bekkevold 2009. Population genomics of marine fishes: identifying adaptive variation in space and time. Molecular Ecology 18:3128-3150.
-
(2009)
Molecular Ecology
, vol.18
, pp. 3128-3150
-
-
Nielsen, E.E.1
Hemmer-Hansen, J.2
Larsen, P.F.3
Bekkevold, D.4
-
56
-
-
58749092473
-
Divergent selection and heterogeneous genomic divergence
-
Nosil, P., D. J. Funk, and D. Ortiz-Barrientos 2009. Divergent selection and heterogeneous genomic divergence. Molecular Ecology 18:375-402.
-
(2009)
Molecular Ecology
, vol.18
, pp. 375-402
-
-
Nosil, P.1
Funk, D.J.2
Ortiz-Barrientos, D.3
-
57
-
-
77953987466
-
The influence of hydrology and waterway distance on population structure of Chinook salmon Oncorhynchus tshawytscha in a large river
-
Olsen, J. B., T. D. Beacham, M. Wetklo, L. W. Seeb, C. T. Smith, B. G. Flannery, and J. K. Wenburg 2010. The influence of hydrology and waterway distance on population structure of Chinook salmon Oncorhynchus tshawytscha in a large river. Journal of Fish Biology 76:1128-1148.
-
(2010)
Journal of Fish Biology
, vol.76
, pp. 1128-1148
-
-
Olsen, J.B.1
Beacham, T.D.2
Wetklo, M.3
Seeb, L.W.4
Smith, C.T.5
Flannery, B.G.6
Wenburg, J.K.7
-
58
-
-
78650991482
-
Comparative landscape genetic analysis of three Pacific salmon species from subarctic North America
-
Olsen, J. B., P. A. Crane, B. G. Flannery, K. Dunmall, W. D. Templin, and J. K. Wenburg 2011. Comparative landscape genetic analysis of three Pacific salmon species from subarctic North America. Conservation Genetics 12:223-241.
-
(2011)
Conservation Genetics
, vol.12
, pp. 223-241
-
-
Olsen, J.B.1
Crane, P.A.2
Flannery, B.G.3
Dunmall, K.4
Templin, W.D.5
Wenburg, J.K.6
-
59
-
-
47649115949
-
Genetic estimates of contemporary effective population size: what can they tell us about the importance of genetic stochasticity for wild population persistence?
-
Palstra, F. P., and D. E. Ruzzante 2008. Genetic estimates of contemporary effective population size: what can they tell us about the importance of genetic stochasticity for wild population persistence? Molecular Ecology 17:3428-3447.
-
(2008)
Molecular Ecology
, vol.17
, pp. 3428-3447
-
-
Palstra, F.P.1
Ruzzante, D.E.2
-
60
-
-
80054800117
-
Demographic and genetic factors shaping contemporary metapopulation effective size and its empirical estimation in salmonid fish
-
Palstra, F. P., and D. E. Ruzzante 2011. Demographic and genetic factors shaping contemporary metapopulation effective size and its empirical estimation in salmonid fish. Heredity 107:444-455.
-
(2011)
Heredity
, vol.107
, pp. 444-455
-
-
Palstra, F.P.1
Ruzzante, D.E.2
-
61
-
-
79956078854
-
Effective population size of current human population
-
Park, L. 2011. Effective population size of current human population. Genetics Research 93:105-114.
-
(2011)
Genetics Research
, vol.93
, pp. 105-114
-
-
Park, L.1
-
62
-
-
84867293252
-
GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research-an update
-
Peakall, R., and P. E. Smouse 2012. GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research-an update. Bioinformatics 28:2537-2539.
-
(2012)
Bioinformatics
, vol.28
, pp. 2537-2539
-
-
Peakall, R.1
Smouse, P.E.2
-
63
-
-
84873999147
-
Accounting for missing data in the estimation of contemporary genetic effective population size (Ne)
-
Peel, D., R. S. Waples, G. M. Macbeth, C. Do, and J. R. Ovenden 2013. Accounting for missing data in the estimation of contemporary genetic effective population size (Ne). Molecular Ecology Resources 13:243-253.
-
(2013)
Molecular Ecology Resources
, vol.13
, pp. 243-253
-
-
Peel, D.1
Waples, R.S.2
Macbeth, G.M.3
Do, C.4
Ovenden, J.R.5
-
64
-
-
6044264968
-
GENECLASS2: A software for genetic assignment and first-generation migrant detection
-
Piry, S., A. Alapetite, J. M. Cornuet, D. Paetkau, L. Baudouin, and A. Estoup 2004. GENECLASS2: A software for genetic assignment and first-generation migrant detection. Journal of Heredity 95:536-539.
-
(2004)
Journal of Heredity
, vol.95
, pp. 536-539
-
-
Piry, S.1
Alapetite, A.2
Cornuet, J.M.3
Paetkau, D.4
Baudouin, L.5
Estoup, A.6
-
65
-
-
34548292504
-
PLINK: a tool set for whole-genome association and population-based linkage analyses
-
Purcell, S., B. Neale, K. Todd-Brown, L. Thomas, M. A. R. Ferreira, D. Bender, J. Maller et al. 2007. PLINK: a tool set for whole-genome association and population-based linkage analyses. American Journal of Human Genetics 81:559-575.
-
(2007)
American Journal of Human Genetics
, vol.81
, pp. 559-575
-
-
Purcell, S.1
Neale, B.2
Todd-Brown, K.3
Thomas, L.4
Ferreira, M.A.R.5
Bender, D.6
Maller, J.7
-
66
-
-
0027997939
-
Widespread occurrence of the TC1 transposon family - TC1-like transposons from teleost fish
-
Radice, A. D., B. Bugaj, D. H. A. Fitch, and S. W. Emmons 1994. Widespread occurrence of the TC1 transposon family - TC1-like transposons from teleost fish. Molecular & General Genetics 244:606-612.
-
(1994)
Molecular & General Genetics
, vol.244
, pp. 606-612
-
-
Radice, A.D.1
Bugaj, B.2
Fitch, D.H.A.3
Emmons, S.W.4
-
68
-
-
84255198561
-
Genome-wide patterns of divergence during speciation: the lake whitefish case study
-
Renaut, S., N. Maillet, E. Normandeau, C. Sauvage, N. Derome, S. M. Rogers, and L. Bernatchez 2012. Genome-wide patterns of divergence during speciation: the lake whitefish case study. Philosophical Transactions of the Royal Society B-Biological Sciences 367:354-363.
-
(2012)
Philosophical Transactions of the Royal Society B-Biological Sciences
, vol.367
, pp. 354-363
-
-
Renaut, S.1
Maillet, N.2
Normandeau, E.3
Sauvage, C.4
Derome, N.5
Rogers, S.M.6
Bernatchez, L.7
-
69
-
-
84862564389
-
Uninformative polymorphisms bias genome scans for signatures of selection
-
Roesti, M., W. Salzburger, and D. Berner 2012. Uninformative polymorphisms bias genome scans for signatures of selection. BMC Evolutionary Biology 12:94.
-
(2012)
BMC Evolutionary Biology
, vol.12
, pp. 94
-
-
Roesti, M.1
Salzburger, W.2
Berner, D.3
-
70
-
-
36849080837
-
GENEPOP ' 007: a complete re-implementation of the GENEPOP software for Windows and Linux
-
Rousset, F. 2008. GENEPOP ' 007: a complete re-implementation of the GENEPOP software for Windows and Linux. Molecular Ecology Resources 8:103-106.
-
(2008)
Molecular Ecology Resources
, vol.8
, pp. 103-106
-
-
Rousset, F.1
-
71
-
-
84857087886
-
Detection of outlier loci and their utility for fisheries management
-
Russello, M. A., S. L. Kirk, K. K. Frazer, and P. J. Askey 2012. Detection of outlier loci and their utility for fisheries management. Evolutionary Applications 5:39-52.
-
(2012)
Evolutionary Applications
, vol.5
, pp. 39-52
-
-
Russello, M.A.1
Kirk, S.L.2
Frazer, K.K.3
Askey, P.J.4
-
72
-
-
84897887058
-
-
Anvik River salmon escapement study, 1994 [online]. Alaska Department of Fish and Game, Regional Information Report No. 3A95-08. Available from
-
Sandone, G. 1995. Anvik River salmon escapement study, 1994 [online]. Alaska Department of Fish and Game, Regional Information Report No. 3A95-08. Available from http://www.sf.adfg.state.ak.us/FedAidPDFs/RIR.3A.1995.08.pdf (accessed on 30 January 2013).
-
(1995)
-
-
Sandone, G.1
-
73
-
-
77953212693
-
Population diversity and the portfolio effect in an exploited species
-
Schindler, D. E., R. Hilborn, B. Chasco, C. P. Boatright, T. P. Quinn, L. A. Rogers, and M. S. Webster 2010. Population diversity and the portfolio effect in an exploited species. Nature 465:609-612.
-
(2010)
Nature
, vol.465
, pp. 609-612
-
-
Schindler, D.E.1
Hilborn, R.2
Chasco, B.3
Boatright, C.P.4
Quinn, T.P.5
Rogers, L.A.6
Webster, M.S.7
-
74
-
-
0002107940
-
High genetic heterogeneity in chum salmon in western Alaska, the contact zone between northern and southern lineages
-
Seeb, L. W., and P. A. Crane 1999. High genetic heterogeneity in chum salmon in western Alaska, the contact zone between northern and southern lineages. Transactions of the American Fisheries Society 128:58-87.
-
(1999)
Transactions of the American Fisheries Society
, vol.128
, pp. 58-87
-
-
Seeb, L.W.1
Crane, P.A.2
-
75
-
-
0034471327
-
Genetic diversity of sockeye salmon of Cook Inlet, Alaska, and its application to management of populations affected by the Exxon Valdez oil spill
-
Seeb, L. W., C. Habicht, W. D. Templin, K. E. Tarbox, R. Z. Davis, L. K. Brannian, and J. E. Seeb 2000. Genetic diversity of sockeye salmon of Cook Inlet, Alaska, and its application to management of populations affected by the Exxon Valdez oil spill. Transactions of the American Fisheries Society 129:1223-1249.
-
(2000)
Transactions of the American Fisheries Society
, vol.129
, pp. 1223-1249
-
-
Seeb, L.W.1
Habicht, C.2
Templin, W.D.3
Tarbox, K.E.4
Davis, R.Z.5
Brannian, L.K.6
Seeb, J.E.7
-
76
-
-
79751513975
-
Transcriptome sequencing and high-resolution melt analysis advance single nucleotide polymorphism discovery in duplicated salmonids
-
Seeb, J. E., C. E. Pascal, E. D. Grau, L. W. Seeb, W. D. Templin, T. Harkins, and S. B. Roberts 2011. Transcriptome sequencing and high-resolution melt analysis advance single nucleotide polymorphism discovery in duplicated salmonids. Molecular Ecology Resources 11:335-348.
-
(2011)
Molecular Ecology Resources
, vol.11
, pp. 335-348
-
-
Seeb, J.E.1
Pascal, C.E.2
Grau, E.D.3
Seeb, L.W.4
Templin, W.D.5
Harkins, T.6
Roberts, S.B.7
-
77
-
-
0032718203
-
Managing fisheries using genetic data: case studies from four species of Pacific salmon
-
Shaklee, J. B., T. D. Beacham, L. Seeb, and B. A. White 1999. Managing fisheries using genetic data: case studies from four species of Pacific salmon. Fisheries Research 43:45-78.
-
(1999)
Fisheries Research
, vol.43
, pp. 45-78
-
-
Shaklee, J.B.1
Beacham, T.D.2
Seeb, L.3
White, B.A.4
-
78
-
-
23844472888
-
Single nucleotide polymorphisms provide rapid and accurate estimates of the proportions of US and Canadian Chinook salmon caught in Yukon River fisheries
-
Smith, C. T., W. D. Templin, J. E. Seeb, and L. W. Seeb 2005. Single nucleotide polymorphisms provide rapid and accurate estimates of the proportions of US and Canadian Chinook salmon caught in Yukon River fisheries. North American Journal of Fisheries Management 25:944-953.
-
(2005)
North American Journal of Fisheries Management
, vol.25
, pp. 944-953
-
-
Smith, C.T.1
Templin, W.D.2
Seeb, J.E.3
Seeb, L.W.4
-
79
-
-
84880752576
-
Estimating effective population size from linkage disequilibrium between unlinked loci: theory and application to fruit fly outbreak populations
-
Sved, J. A., E. C. Cameron, and A. S. Gilchrist 2013. Estimating effective population size from linkage disequilibrium between unlinked loci: theory and application to fruit fly outbreak populations. PLoS ONE 8:e69078.
-
(2013)
PLoS ONE
, vol.8
-
-
Sved, J.A.1
Cameron, E.C.2
Gilchrist, A.S.3
-
80
-
-
0031172493
-
Postglacial genetic differentiation of reproductive ecotypes of kokanee Oncorhynchus nerka in Okanagan Lake
-
Taylor, E. B., S. Harvey, S. Pollard, and J. Volpe 1997. Postglacial genetic differentiation of reproductive ecotypes of kokanee Oncorhynchus nerka in Okanagan Lake. British Columbia. Molecular Ecology 6:503-517.
-
(1997)
British Columbia. Molecular Ecology
, vol.6
, pp. 503-517
-
-
Taylor, E.B.1
Harvey, S.2
Pollard, S.3
Volpe, J.4
-
81
-
-
79951731234
-
Genetic differentiation of Alaska Chinook salmon: the missing link for migratory studies
-
Templin, W. D., J. E. Seeb, J. R. Jasper, A. W. Barclay, and L. W. Seeb 2011. Genetic differentiation of Alaska Chinook salmon: the missing link for migratory studies. Molecular Ecology Resources 11:226-246.
-
(2011)
Molecular Ecology Resources
, vol.11
, pp. 226-246
-
-
Templin, W.D.1
Seeb, J.E.2
Jasper, J.R.3
Barclay, A.W.4
Seeb, L.W.5
-
82
-
-
34147165220
-
Recent human effective population size estimated from linkage disequilibrium
-
Tenesa, A., P. Navarro, B. J. Hayes, D. L. Duffy, G. M. Clarke, M. E. Goddard, and P. M. Visscher 2007. Recent human effective population size estimated from linkage disequilibrium. Genome Research 17:520-526.
-
(2007)
Genome Research
, vol.17
, pp. 520-526
-
-
Tenesa, A.1
Navarro, P.2
Hayes, B.J.3
Duffy, D.L.4
Clarke, G.M.5
Goddard, M.E.6
Visscher, P.M.7
-
83
-
-
21144478684
-
Genetic markers and mixed stock fisheries
-
Utter, F., and N. Ryman 1993. Genetic markers and mixed stock fisheries. Fisheries 18:11-21.
-
(1993)
Fisheries
, vol.18
, pp. 11-21
-
-
Utter, F.1
Ryman, N.2
-
84
-
-
0000785288
-
Biochemical genetic studies of fishes: potentialities and limitations
-
In D. C. Malins, and J. R. Sargents, eds., vol. 1 Academic Press, San Francisco, CA.
-
Utter, F., H. Hodgins, and F. Allendorf 1974. Biochemical genetic studies of fishes: potentialities and limitations. In D. C. Malins, and J. R. Sargents, eds. Biochemical and biophysical perspectives in marine biology, vol. 1, pp. 213-238. Academic Press, San Francisco, CA.
-
(1974)
Biochemical and biophysical perspectives in marine biology
, pp. 213-238
-
-
Utter, F.1
Hodgins, H.2
Allendorf, F.3
-
85
-
-
0025631987
-
Conservation genetics of Pacific salmon. 3. Estimating effective population-size
-
Waples, R. S. 1990. Conservation genetics of Pacific salmon. 3. Estimating effective population-size. Journal of Heredity 81:277-289.
-
(1990)
Journal of Heredity
, vol.81
, pp. 277-289
-
-
Waples, R.S.1
-
86
-
-
0031694560
-
Separating the wheat from the chaff: patterns of genetic differentiation in high gene flow species
-
Waples, R. S. 1998. Separating the wheat from the chaff: patterns of genetic differentiation in high gene flow species. Journal of Heredity 89:438-450.
-
(1998)
Journal of Heredity
, vol.89
, pp. 438-450
-
-
Waples, R.S.1
-
87
-
-
33745015584
-
A bias correction for estimates of effective population size based on linkage disequilibrium at unlinked gene loci
-
Waples, R. S. 2006. A bias correction for estimates of effective population size based on linkage disequilibrium at unlinked gene loci. Conservation Genetics 7:167-184.
-
(2006)
Conservation Genetics
, vol.7
, pp. 167-184
-
-
Waples, R.S.1
-
88
-
-
77954278662
-
e using highly variable genetic markers: a largely untapped resource for applied conservation and evolution
-
e using highly variable genetic markers: a largely untapped resource for applied conservation and evolution. Evolutionary Applications 3:244-262.
-
(2010)
Evolutionary Applications
, vol.3
, pp. 244-262
-
-
Waples, R.S.1
Do, C.2
-
89
-
-
41849097466
-
Six decades of fishery genetics: taking stock
-
Waples, R. S., W. W. Dickhoff, L. Hauser, and N. Ryman 2008. Six decades of fishery genetics: taking stock. Fisheries 33:76-79.
-
(2008)
Fisheries
, vol.33
, pp. 76-79
-
-
Waples, R.S.1
Dickhoff, W.W.2
Hauser, L.3
Ryman, N.4
-
90
-
-
0021566877
-
Estimating F-statistics for the analysis of population-structure
-
Weir, B. S., and C. C. Cockerham 1984. Estimating F-statistics for the analysis of population-structure. Evolution 38:1358-1370.
-
(1984)
Evolution
, vol.38
, pp. 1358-1370
-
-
Weir, B.S.1
Cockerham, C.C.2
-
91
-
-
84897896035
-
-
and. Kogrukluk River salmon studies, 2010 [online]. Alaska Department of Fish and Game, Fishery Data Series No. 11-49.
-
Williams, D., and C. Shelden 2011. Kogrukluk River salmon studies, 2010 [online]. Alaska Department of Fish and Game, Fishery Data Series No. 11-49. http://www.adfg.alaska.gov/FedAidpdfs/FDS11-49.pdf (accessed on 30 January 2012).
-
(2011)
-
-
Williams, D.1
Shelden, C.2
-
92
-
-
0042083719
-
What DNA can do for you
-
Wirgin, I. I., and J. R. Waldman 1994. What DNA can do for you. Fisheries 19:16-27.
-
(1994)
Fisheries
, vol.19
, pp. 16-27
-
-
Wirgin, I.I.1
Waldman, J.R.2
-
93
-
-
84897908769
-
-
Assessing reliability of Pebble Limited Partnership's salmon escapement studies [online]. Fisheries research and consulting, Anchorage, Alaska.
-
Woody, C. A. 2012. Assessing reliability of Pebble Limited Partnership's salmon escapement studies [online]. Fisheries research and consulting, Anchorage, Alaska. http://www.pebblescience.org/pdfs/Woody_EBD_EscapementFINAL27June2012.pdf (accessed on 30 January 2012).
-
(2012)
-
-
Woody, C.A.1
-
94
-
-
43149115851
-
Velvet: algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino, D. R., and E. Birney 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Research 18:821-829.
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(2008)
Genome Research
, vol.18
, pp. 821-829
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Zerbino, D.R.1
Birney, E.2
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