-
1
-
-
48249156638
-
What is the role of the metabolic activity of the gut microbiota in inflammatory bowel disease? Probing for answers with stable isotopes
-
Barclay AR, Morrison DJ, Weaver LT. What is the role of the metabolic activity of the gut microbiota in inflammatory bowel disease? Probing for answers with stable isotopes. J Pediatr Gastroenterol Nutr. 2008;46:486-495.
-
(2008)
J Pediatr Gastroenterol Nutr
, vol.46
, pp. 486-495
-
-
Barclay, A.R.1
Morrison, D.J.2
Weaver, L.T.3
-
2
-
-
79959216005
-
Genetics and pathogenesis of inflammatory bowel disease
-
Khor B, Gardet A, Xavier RJ. Genetics and pathogenesis of inflammatory bowel disease. Nature. 2011;474:307-317.
-
(2011)
Nature
, vol.474
, pp. 307-317
-
-
Khor, B.1
Gardet, A.2
Xavier, R.J.3
-
4
-
-
20544444045
-
Diversity of the human intestinal microbial flora
-
Eckburg PB, Bik EM, Bernstein CN, et al. Diversity of the human intestinal microbial flora. Science. 2005;308:1635-1638.
-
(2005)
Science
, vol.308
, pp. 1635-1638
-
-
Eckburg, P.B.1
Bik, E.M.2
Bernstein, C.N.3
-
5
-
-
84862276328
-
Structure function and diversity of the healthy human microbiome
-
Human Microbiome Project C. Structure, function and diversity of the healthy human microbiome. Nature. 2012;486:207-214.
-
(2012)
Nature
, vol.486
, pp. 207-214
-
-
Human Microbiome Project, C.1
-
7
-
-
79960854386
-
Intestinal microbiota in healthy adults: Temporal analysis reveals individual and common core and relation to intestinal symptoms
-
Jalanka-Tuovinen J, Salonen A, Nikkila J, et al. Intestinal microbiota in healthy adults: temporal analysis reveals individual and common core and relation to intestinal symptoms. PLoS One. 2011;6:e23035.
-
(2011)
PLoS One
, vol.6
, pp. e23035
-
-
Jalanka-Tuovinen, J.1
Salonen, A.2
Nikkila, J.3
-
8
-
-
84875904427
-
Long-term monitoring of the human intestinal microbiota composition
-
[published online ahead of print October 15]
-
Rajilic-Stojanovic M, Heilig HG, Tims S, et al. Long-term monitoring of the human intestinal microbiota composition. Environ Microbiol. [published online ahead of print October 15, 2012]. doi: 10.1111/1462-2920.12023.
-
(2012)
Environ Microbiol
-
-
Rajilic-Stojanovic, M.1
Heilig, H.G.2
Tims, S.3
-
10
-
-
84881484788
-
Cohabiting family members share microbiota with one another and with their dogs
-
Song SJ, Lauber C, Costello EK, et al. Cohabiting family members share microbiota with one another and with their dogs. Elife. 2013;2:e00458.
-
(2013)
Elife
, vol.2
, pp. e00458
-
-
Song, S.J.1
Lauber, C.2
Costello, E.K.3
-
11
-
-
80053618114
-
Linking long-term dietary patterns with gut microbial enterotypes
-
Wu GD, Chen J, Hoffmann C, et al. Linking long-term dietary patterns with gut microbial enterotypes. Science. 2011;334:105-108.
-
(2011)
Science
, vol.334
, pp. 105-108
-
-
Wu, G.D.1
Chen, J.2
Hoffmann, C.3
-
12
-
-
84892828465
-
Diet rapidly and reproducibly alters the human gut microbiome
-
David LA, Maurice CF, Carmody RN, et al. Diet rapidly and reproducibly alters the human gut microbiome. Nature. 2014;505:559-563.
-
(2014)
Nature
, vol.505
, pp. 559-563
-
-
David, L.A.1
Maurice, C.F.2
Carmody, R.N.3
-
13
-
-
56849106496
-
The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing
-
Dethlefsen L, Huse S, Sogin ML, et al. The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. PLoS Biol. 2008;6:e280.
-
(2008)
PLoS Biol
, vol.6
, pp. e280
-
-
Dethlefsen, L.1
Huse, S.2
Sogin, M.L.3
-
14
-
-
84861331645
-
Smokers with active Crohn's disease have a clinically relevant dysbiosis of the gastrointestinal microbiota
-
Benjamin JL, Hedin CR, Koutsoumpas A, et al. Smokers with active Crohn's disease have a clinically relevant dysbiosis of the gastrointestinal microbiota. Inflamm Bowel Dis. 2012;18:1092-1100.
-
(2012)
Inflamm Bowel Dis
, vol.18
, pp. 1092-1100
-
-
Benjamin, J.L.1
Hedin, C.R.2
Koutsoumpas, A.3
-
15
-
-
84875047451
-
Smoking cessation induces profound changes in the composition of the intestinal microbiota in humans
-
Biedermann L, Zeitz J, Mwinyi J, et al. Smoking cessation induces profound changes in the composition of the intestinal microbiota in humans. PLoS One. 2013;8:e59260.
-
(2013)
PLoS One
, vol.8
, pp. e59260
-
-
Biedermann, L.1
Zeitz, J.2
Mwinyi, J.3
-
16
-
-
33845874101
-
An obesity-associated gut microbiome with increased capacity for energy harvest
-
Turnbaugh PJ, Ley RE, Mahowald MA, et al. An obesity-associated gut microbiome with increased capacity for energy harvest. Nature. 2006;444: 1027-1031.
-
(2006)
Nature
, vol.444
, pp. 1027-1031
-
-
Turnbaugh, P.J.1
Ley, R.E.2
Mahowald, M.A.3
-
17
-
-
58749112734
-
A core gut microbiome in obese and lean twins
-
Turnbaugh PJ, Hamady M, Yatsunenko T, et al. A core gut microbiome in obese and lean twins. Nature. 2009;457:480-484.
-
(2009)
Nature
, vol.457
, pp. 480-484
-
-
Turnbaugh, P.J.1
Hamady, M.2
Yatsunenko, T.3
-
18
-
-
84880059693
-
Dysbiosis signature of fecal microbiota in colorectal cancer patients
-
Wu N, Yang X, Zhang R, et al. Dysbiosis signature of fecal microbiota in colorectal cancer patients. Microb Ecol. 2013;66:462-470.
-
(2013)
Microb Ecol
, vol.66
, pp. 462-470
-
-
Wu, N.1
Yang, X.2
Zhang, R.3
-
19
-
-
84856534859
-
Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma
-
Castellarin M, Warren RL, Freeman JD, et al. Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma. Genome Res. 2012; 22:299-306.
-
(2012)
Genome Res
, vol.22
, pp. 299-306
-
-
Castellarin, M.1
Warren, R.L.2
Freeman, J.D.3
-
20
-
-
84898824175
-
Interactions between the intestinal microbiome and liver diseases
-
Schnabl B, Brenner DA. Interactions between the intestinal microbiome and liver diseases. Gastroenterology. 2014;146:1513-1524.
-
(2014)
Gastroenterology
, vol.146
, pp. 1513-1524
-
-
Schnabl, B.1
Brenner, D.A.2
-
21
-
-
84868555218
-
The microbiota link to irritable bowel syndrome: An emerging story
-
Jeffery IB, Quigley EM, Ohman L, et al. The microbiota link to irritable bowel syndrome: an emerging story. Gut Microbes. 2012;3:572-576.
-
(2012)
Gut Microbes
, vol.3
, pp. 572-576
-
-
Jeffery, I.B.1
Quigley, E.M.2
Ohman, L.3
-
22
-
-
84861578319
-
An irritable bowel syndrome subtype defined by species-specific alterations in faecal microbiota
-
Jeffery IB, O'Toole PW, Ohman L, et al. An irritable bowel syndrome subtype defined by species-specific alterations in faecal microbiota. Gut. 2012;61:997-1006.
-
(2012)
Gut
, vol.61
, pp. 997-1006
-
-
Jeffery, I.B.1
O'Toole, P.W.2
Ohman, L.3
-
23
-
-
80054119513
-
Molecular analysis of the luminal-and mucosal-associated intestinal microbiota in diarrheapredominant irritable bowel syndrome
-
Carroll IM, Ringel-Kulka T, Keku TO, et al. Molecular analysis of the luminal-and mucosal-associated intestinal microbiota in diarrheapredominant irritable bowel syndrome. Am J Physiol Gastrointest Liver Physiol. 2011;301:G799-G807.
-
(2011)
Am J Physiol Gastrointest Liver Physiol
, vol.301
, pp. G799-G807
-
-
Carroll, I.M.1
Ringel-Kulka, T.2
Keku, T.O.3
-
24
-
-
84896092821
-
The treatment-naive microbiome in new-onset Crohn's disease
-
Gevers D, Kugathasan S, Denson LA, et al. The treatment-naive microbiome in new-onset Crohn's disease. Cell Host Microbe. 2014;15: 382-392.
-
(2014)
Cell Host Microbe
, vol.15
, pp. 382-392
-
-
Gevers, D.1
Kugathasan, S.2
Denson, L.A.3
-
25
-
-
84866549438
-
Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment
-
Morgan XC, Tickle TL, Sokol H, et al. Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment. Genome Biol. 2012;13:R79.
-
(2012)
Genome Biol
, vol.13
, pp. R79
-
-
Morgan, X.C.1
Tickle, T.L.2
Sokol, H.3
-
26
-
-
77950251400
-
A human gut microbial gene catalogue established by metagenomic sequencing
-
Qin J, Li R, Raes J, et al. A human gut microbial gene catalogue established by metagenomic sequencing. Nature. 2010;464:59-65.
-
(2010)
Nature
, vol.464
, pp. 59-65
-
-
Qin, J.1
Li, R.2
Raes, J.3
-
27
-
-
30944466824
-
Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach
-
Manichanh C, Rigottier-Gois L, Bonnaud E, et al. Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach. Gut. 2006;55:205-211.
-
(2006)
Gut
, vol.55
, pp. 205-211
-
-
Manichanh, C.1
Rigottier-Gois, L.2
Bonnaud, E.3
-
28
-
-
84908554334
-
Bacterial protein signals are associated with Crohn's disease
-
Juste C, Kreil DP, Beauvallet C, et al. Bacterial protein signals are associated with Crohn's disease. Gut. 2014.
-
(2014)
Gut.
-
-
Juste, C.1
Kreil, D.P.2
Beauvallet, C.3
-
29
-
-
20244388832
-
Ornidazole for prophylaxis of postoperative Crohn's disease recurrence: A randomized, double-blind, placebo-controlled trial
-
Rutgeerts P, Van Assche G, Vermeire S, et al. Ornidazole for prophylaxis of postoperative Crohn's disease recurrence: a randomized, double-blind, placebo-controlled trial. Gastroenterology. 2005;128:856-861.
-
(2005)
Gastroenterology
, vol.128
, pp. 856-861
-
-
Rutgeerts, P.1
Van Assche, G.2
Vermeire, S.3
-
30
-
-
0029079279
-
Controlled trial of metronidazole treatment for prevention of Crohn's recurrence after ileal resection
-
Rutgeerts P, Hiele M, Geboes K, et al. Controlled trial of metronidazole treatment for prevention of Crohn's recurrence after ileal resection. Gastroenterology. 1995;108:1617-1621.
-
(1995)
Gastroenterology
, vol.108
, pp. 1617-1621
-
-
Rutgeerts, P.1
Hiele, M.2
Geboes, K.3
-
31
-
-
0025887076
-
Effect of faecal stream diversion on recurrence of Crohn's disease in the neoterminal ileum
-
Rutgeerts P, Goboes K, Peeters M, et al. Effect of faecal stream diversion on recurrence of Crohn's disease in the neoterminal ileum. Lancet. 1991; 338:771-774.
-
(1991)
Lancet
, vol.338
, pp. 771-774
-
-
Rutgeerts, P.1
Goboes, K.2
Peeters, M.3
-
32
-
-
84865494677
-
Systematic review: Faecal microbiota transplantation in the management of inflammatory bowel disease
-
Anderson JL, Edney RJ, Whelan K. Systematic review: faecal microbiota transplantation in the management of inflammatory bowel disease. Aliment Pharmacol Ther. 2012;36:503-516.
-
(2012)
Aliment Pharmacol Ther
, vol.36
, pp. 503-516
-
-
Anderson, J.L.1
Edney, R.J.2
Whelan, K.3
-
34
-
-
84898835480
-
Manipulation of the microbiota for treatment of IBS and IBD-Challenges and Controversies
-
Shanahan F, Quigley EM. Manipulation of the Microbiota for Treatment of IBS and IBD-Challenges and Controversies. Gastroenterology. 2014; 146:1554-1563.
-
(2014)
Gastroenterology
, vol.146
, pp. 1554-1563
-
-
Shanahan, F.1
Quigley, E.M.2
-
35
-
-
68049122102
-
Preferred reporting items for systematic reviews and meta-analyses: The PRISMA statement
-
Moher D, Liberati A, Tetzlaff J, et al. Preferred reporting items for systematic reviews and meta-analyses: the PRISMA statement. PLoS Med. 2009;6:e1000097.
-
(2009)
PLoS Med
, vol.6
, pp. e1000097
-
-
Moher, D.1
Liberati, A.2
Tetzlaff, J.3
-
36
-
-
84868336049
-
Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease
-
Jostins L, Ripke S, Weersma RK, et al. Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease. Nature. 2012;491:119-124.
-
(2012)
Nature
, vol.491
, pp. 119-124
-
-
Jostins, L.1
Ripke, S.2
Weersma, R.K.3
-
37
-
-
0035978533
-
A frameshift mutation in NOD2 associated with susceptibility to Crohn's disease
-
Ogura Y, Bonen DK, Inohara N, et al. A frameshift mutation in NOD2 associated with susceptibility to Crohn's disease. Nature. 2001;411:603-606.
-
(2001)
Nature
, vol.411
, pp. 603-606
-
-
Ogura, Y.1
Bonen, D.K.2
Inohara, N.3
-
38
-
-
0037180433
-
Developmental regulation of intestinal angiogenesis by indigenous microbes via Paneth cells
-
Stappenbeck TS, Hooper LV, Gordon JI. Developmental regulation of intestinal angiogenesis by indigenous microbes via Paneth cells. Proc Natl Acad Sci USA. 2002;99:15451-15455.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 15451-15455
-
-
Stappenbeck, T.S.1
Hooper, L.V.2
Gordon, J.I.3
-
39
-
-
33847016160
-
NOD2 variants and antibody response to microbial antigens in Crohn's disease patients and their unaffected relatives
-
Devlin SM, Yang H, Ippoliti A, et al. NOD2 variants and antibody response to microbial antigens in Crohn's disease patients and their unaffected relatives. Gastroenterology. 2007;132:576-586.
-
(2007)
Gastroenterology
, vol.132
, pp. 576-586
-
-
Devlin, S.M.1
Yang, H.2
Ippoliti, A.3
-
40
-
-
34548153548
-
Seroreactivity to microbial components in Crohn's disease is associated with ileal involvement, noninflammatory disease behavior and NOD2/CARD15 genotype, but not with risk for surgery in a Hungarian cohort of IBD patients
-
Papp M, Altorjay I, Norman GL, et al. Seroreactivity to microbial components in Crohn's disease is associated with ileal involvement, noninflammatory disease behavior and NOD2/CARD15 genotype, but not with risk for surgery in a Hungarian cohort of IBD patients. Inflamm Bowel Dis. 2007;13:984-992.
-
(2007)
Inflamm Bowel Dis
, vol.13
, pp. 984-992
-
-
Papp, M.1
Altorjay, I.2
Norman, G.L.3
-
41
-
-
84861001724
-
Inflammatory bowel diseases phenotype C. Difficile and NOD2 genotype are associated with shifts in human ileum associated microbial composition
-
Li E, Hamm CM, Gulati AS, et al. Inflammatory bowel diseases phenotype, C. difficile and NOD2 genotype are associated with shifts in human ileum associated microbial composition. PLoS One. 2012;7:e26284.
-
(2012)
PLoS One
, vol.7
, pp. e26284
-
-
Li, E.1
Hamm, C.M.2
Gulati, A.S.3
-
42
-
-
80052580369
-
Nod2 is essential for temporal development of intestinal microbial communities
-
Rehman A, Sina C, Gavrilova O, et al. Nod2 is essential for temporal development of intestinal microbial communities. Gut. 2011;60:1354-1362.
-
(2011)
Gut
, vol.60
, pp. 1354-1362
-
-
Rehman, A.1
Sina, C.2
Gavrilova, O.3
-
43
-
-
78650099360
-
Disease phenotype and genotype are associated with shifts in intestinal-associated microbiota in inflammatory bowel diseases
-
Frank DN, Robertson CE, Hamm CM, et al. Disease phenotype and genotype are associated with shifts in intestinal-associated microbiota in inflammatory bowel diseases. Inflamm Bowel Dis. 2011;17:179-184.
-
(2011)
Inflamm Bowel Dis
, vol.17
, pp. 179-184
-
-
Frank, D.N.1
Robertson, C.E.2
Hamm, C.M.3
-
44
-
-
84928259169
-
PWE-082 the impact of Nod2 variants on gut microbiota in Crohn's disease and healthy controls
-
Kennedy N, Walker A, Berry S, et al. PWE-082 the impact of Nod2 variants on gut microbiota in Crohn's disease and healthy controls. Gut. 2014;63(suppl 1):A159-A160.
-
(2014)
Gut
, vol.63
, pp. A159-A160
-
-
Kennedy, N.1
Walker, A.2
Berry, S.3
-
45
-
-
46749119859
-
Molecular analysis of the gut microbiota of identical twins with Crohn's disease
-
Dicksved J, Halfvarson J, Rosenquist M, et al. Molecular analysis of the gut microbiota of identical twins with Crohn's disease. ISME J. 2008;2: 716-727.
-
(2008)
ISME J
, vol.2
, pp. 716-727
-
-
Dicksved, J.1
Halfvarson, J.2
Rosenquist, M.3
-
46
-
-
66249129571
-
Twin studies reveal specific imbalances in the mucosa-associated microbiota of patients with ileal Crohn's disease
-
Willing B, Halfvarson J, Dicksved J, et al. Twin studies reveal specific imbalances in the mucosa-associated microbiota of patients with ileal Crohn's disease. Inflamm Bowel Dis. 2009;15:653-660.
-
(2009)
Inflamm Bowel Dis
, vol.15
, pp. 653-660
-
-
Willing, B.1
Halfvarson, J.2
Dicksved, J.3
-
47
-
-
78649686679
-
A pyrosequencing study in twins shows that gastrointestinal microbial profiles vary with inflammatory bowel disease phenotypes
-
e1
-
Willing BP, Dicksved J, Halfvarson J, et al. A pyrosequencing study in twins shows that gastrointestinal microbial profiles vary with inflammatory bowel disease phenotypes. Gastroenterology. 2010; 139:1844-1854.e1.
-
(2010)
Gastroenterology
, vol.139
, pp. 1844-1854
-
-
Willing, B.P.1
Dicksved, J.2
Halfvarson, J.3
-
48
-
-
79953748870
-
Dysbiosis of the faecal microbiota in patients with Crohn's disease and their unaffected relatives
-
Joossens M, Huys G, Cnockaert M, et al. Dysbiosis of the faecal microbiota in patients with Crohn's disease and their unaffected relatives. Gut. 2011;60:631-637.
-
(2011)
Gut
, vol.60
, pp. 631-637
-
-
Joossens, M.1
Huys, G.2
Cnockaert, M.3
-
49
-
-
84908507536
-
Altered intestinal microbiota and blood T cell phenotype are shared by patients with Crohn's disease and their unaffected siblings
-
Hedin CR, McCarthy NE, Louis P, et al. Altered intestinal microbiota and blood T cell phenotype are shared by patients with Crohn's disease and their unaffected siblings. Gut. 2014;63:1578-1586.
-
(2014)
Gut
, vol.63
, pp. 1578-1586
-
-
Hedin, C.R.1
McCarthy, N.E.2
Louis, P.3
-
50
-
-
84928264148
-
OC-051 siblings of Crohn's disease patients exhibit a biologically relevant dysbiosis in the mucosal microbial community: A 16s Rrna Gene Pyrosequencing Study
-
Hedin C, van der Gast C, Rogers G, et al. OC-051 siblings of Crohn's disease patients exhibit a biologically relevant dysbiosis in the mucosal microbial community: a 16s Rrna Gene Pyrosequencing Study. Gut. 2014; 63(suppl 1):A25.
-
(2014)
Gut
, vol.63
, pp. A25
-
-
Hedin, C.1
Van Der Gast, C.2
Rogers, G.3
-
51
-
-
84870824919
-
Microbiota of de-novo pediatric IBD: Increased Faecalibacterium prausnitzii and reduced bacterial diversity in Crohn's but not in ulcerative colitis
-
Hansen R, Russell RK, Reiff C, et al. Microbiota of de-novo pediatric IBD: increased Faecalibacterium prausnitzii and reduced bacterial diversity in Crohn's but not in ulcerative colitis. Am J Gastroenterol. 2012;107: 1913-1922.
-
(2012)
Am J Gastroenterol
, vol.107
, pp. 1913-1922
-
-
Hansen, R.1
Russell, R.K.2
Reiff, C.3
-
52
-
-
55949124035
-
Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients
-
Sokol H, Pigneur B, Watterlot L, et al. Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients. Proc Natl Acad Sci USA. 2008; 105:16731-16736.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 16731-16736
-
-
Sokol, H.1
Pigneur, B.2
Watterlot, L.3
-
53
-
-
77955300097
-
Microbiota in pediatric inflammatory bowel disease
-
e1
-
Schwiertz A, Jacobi M, Frick JS, et al. Microbiota in pediatric inflammatory bowel disease. J Pediatr. 2010;157:240-244.e1.
-
(2010)
J Pediatr
, vol.157
, pp. 240-244
-
-
Schwiertz, A.1
Jacobi, M.2
Frick, J.S.3
-
54
-
-
84875612653
-
Decreased abundance of Faecalibacterium prausnitzii in the gut microbiota of Crohn's disease
-
Fujimoto T, Imaeda H, Takahashi K, et al. Decreased abundance of Faecalibacterium prausnitzii in the gut microbiota of Crohn's disease. J Gastroenterol Hepatol. 2012;28:613-619.
-
(2012)
J Gastroenterol Hepatol
, vol.28
, pp. 613-619
-
-
Fujimoto, T.1
Imaeda, H.2
Takahashi, K.3
-
55
-
-
84872791148
-
Clostridium leptum group bacteria abundance and diversity in the fecal microbiota of patients with inflammatory bowel disease: A case-control study in India
-
Kabeerdoss J, Sankaran V, Pugazhendhi S, et al. Clostridium leptum group bacteria abundance and diversity in the fecal microbiota of patients with inflammatory bowel disease: a case-control study in India. BMC Gastroenterol. 2013;13:20.
-
(2013)
BMC Gastroenterol
, vol.13
, pp. 20
-
-
Kabeerdoss, J.1
Sankaran, V.2
Pugazhendhi, S.3
-
56
-
-
84899627277
-
Mucosa-associated Faecalibacterium prausnitzii and Escherichia coli co-abundance can distinguish Irritable Bowel Syndrome and Inflammatory Bowel Disease phenotypes
-
Lopez-Siles M, Martinez-Medina M, Busquets D, et al. Mucosa-associated Faecalibacterium prausnitzii and Escherichia coli co-abundance can distinguish Irritable Bowel Syndrome and Inflammatory Bowel Disease phenotypes. Int J Med Microbiol. 2014;304:464-475.
-
(2014)
Int J Med Microbiol
, vol.304
, pp. 464-475
-
-
Lopez-Siles, M.1
Martinez-Medina, M.2
Busquets, D.3
-
57
-
-
84905482236
-
Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature
-
Haberman Y, Tickle TL, Dexheimer PJ, et al. Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature. J Clin Invest. 2014;124:3617-3633.
-
(2014)
J Clin Invest
, vol.124
, pp. 3617-3633
-
-
Haberman, Y.1
Tickle, T.L.2
Dexheimer, P.J.3
-
58
-
-
84929168026
-
Characterization of gut microbiota profiles by disease activity in patients with Crohn's disease using data mining analysis of terminal restriction fragment length polymorphisms
-
Andoh A, Kobayashi T, Kuzuoka H, et al. Characterization of gut microbiota profiles by disease activity in patients with Crohn's disease using data mining analysis of terminal restriction fragment length polymorphisms. Biomed Rep. 2014;2:370-373.
-
(2014)
Biomed Rep
, vol.2
, pp. 370-373
-
-
Andoh, A.1
Kobayashi, T.2
Kuzuoka, H.3
-
59
-
-
84886742916
-
Terminal-restriction fragment length polymorphism analysis of diversity of mucosa-associated microbiota in patients with Crohn's disease [Article in Chinese]
-
Ran WB, Ouyang Q, Shi W. Terminal-restriction fragment length polymorphism analysis of diversity of mucosa-associated microbiota in patients with Crohn's disease [Article in Chinese]. Zhonghua Yi Xue Za Zhi. 2013;93:2884-2889.
-
(2013)
Zhonghua Yi Xue Za Zhi
, vol.93
, pp. 2884-2889
-
-
Ran, W.B.1
Ouyang, Q.2
Shi, W.3
-
60
-
-
84859789740
-
Alterations in diversity of the oral microbiome in pediatric inflammatory bowel disease
-
Docktor MJ, Paster BJ, Abramowicz S, et al. Alterations in diversity of the oral microbiome in pediatric inflammatory bowel disease. Inflamm Bowel Dis. 2012;18:935-942.
-
(2012)
Inflamm Bowel Dis
, vol.18
, pp. 935-942
-
-
Docktor, M.J.1
Paster, B.J.2
Abramowicz, S.3
-
61
-
-
84866463340
-
Microbial dysbiosis in pediatric patients with Crohn's disease
-
Kaakoush NO, Day AS, Huinao KD, et al. Microbial dysbiosis in pediatric patients with Crohn's disease. J Clin Microbiol. 2012;50: 3258-3266.
-
(2012)
J Clin Microbiol
, vol.50
, pp. 3258-3266
-
-
Kaakoush, N.O.1
Day, A.S.2
Huinao, K.D.3
-
62
-
-
79960228384
-
High prevalence of aggregative adherent Escherichia coli strains in the mucosa-associated microbiota of patients with inflammatory bowel diseases
-
Thomazini CM, Samegima DA, Rodrigues MA, et al. High prevalence of aggregative adherent Escherichia coli strains in the mucosa-associated microbiota of patients with inflammatory bowel diseases. Int J Med Microbiol. 2011;301:475-479.
-
(2011)
Int J Med Microbiol
, vol.301
, pp. 475-479
-
-
Thomazini, C.M.1
Samegima, D.A.2
Rodrigues, M.A.3
-
63
-
-
79959835543
-
Comparison of the fecal microbiota profiles between ulcerative colitis and Crohn's disease using terminal restriction fragment length polymorphism analysis
-
Andoh A, Imaeda H, Aomatsu T, et al. Comparison of the fecal microbiota profiles between ulcerative colitis and Crohn's disease using terminal restriction fragment length polymorphism analysis. J Gastroenterol. 2011;46:479-486.
-
(2011)
J Gastroenterol
, vol.46
, pp. 479-486
-
-
Andoh, A.1
Imaeda, H.2
Aomatsu, T.3
-
64
-
-
78650973052
-
High-throughput clone library analysis of the mucosa-associated microbiota reveals dysbiosis and differences between inflamed and non-inflamed regions of the intestine in inflammatory bowel disease
-
Walker AW, Sanderson JD, Churcher C, et al. High-throughput clone library analysis of the mucosa-associated microbiota reveals dysbiosis and differences between inflamed and non-inflamed regions of the intestine in inflammatory bowel disease. BMC Microbiol. 2011;11:7.
-
(2011)
BMC Microbiol
, vol.11
, pp. 7
-
-
Walker, A.W.1
Sanderson, J.D.2
Churcher, C.3
-
65
-
-
78049501532
-
Real-time analysis of mucosal flora in patients with inflammatory bowel disease in India
-
Verma R, Verma AK, Ahuja V, et al. Real-time analysis of mucosal flora in patients with inflammatory bowel disease in India. J Clin Microbiol. 2010;48:4279-4282.
-
(2010)
J Clin Microbiol
, vol.48
, pp. 4279-4282
-
-
Verma, R.1
Verma, A.K.2
Ahuja, V.3
-
66
-
-
78649622569
-
Dysbiosis of fecal microbiota in Crohn's disease patients as revealed by a custom phylogenetic microarray
-
Kang S, Denman SE, Morrison M, et al. Dysbiosis of fecal microbiota in Crohn's disease patients as revealed by a custom phylogenetic microarray. Inflamm Bowel Dis. 2010;16:2034-2042.
-
(2010)
Inflamm Bowel Dis
, vol.16
, pp. 2034-2042
-
-
Kang, S.1
Denman, S.E.2
Morrison, M.3
-
67
-
-
74249101114
-
Mucosal bacterial microflora and mucus layer thickness in adolescents with inflammatory bowel disease
-
Fyderek K, Strus M, Kowalska-Duplaga K, et al. Mucosal bacterial microflora and mucus layer thickness in adolescents with inflammatory bowel disease. World J Gastroenterol. 2009;15:5287-5294.
-
(2009)
World J Gastroenterol
, vol.15
, pp. 5287-5294
-
-
Fyderek, K.1
Strus, M.2
Kowalska-Duplaga, K.3
-
68
-
-
57649179488
-
Faecal microbiota profile of Crohn's disease determined by terminal restriction fragment length polymorphism analysis
-
Andoh A, Tsujikawa T, Sasaki M, et al. Faecal microbiota profile of Crohn's disease determined by terminal restriction fragment length polymorphism analysis. Aliment Pharmacol Ther. 2009;29:75-82.
-
(2009)
Aliment Pharmacol Ther
, vol.29
, pp. 75-82
-
-
Andoh, A.1
Tsujikawa, T.2
Sasaki, M.3
-
69
-
-
44349164525
-
Imbalance in intestinal microflora constitution could be involved in the pathogenesis of inflammatory bowel disease
-
Takaishi H, Matsuki T, Nakazawa A, et al. Imbalance in intestinal microflora constitution could be involved in the pathogenesis of inflammatory bowel disease. Int J Med Microbiol. 2008;298:463-472.
-
(2008)
Int J Med Microbiol
, vol.298
, pp. 463-472
-
-
Takaishi, H.1
Matsuki, T.2
Nakazawa, A.3
-
70
-
-
34250375140
-
Microbial diversity of inflamed and noninflamed gut biopsy tissues in inflammatory bowel disease
-
Sepehri S, Kotlowski R, Bernstein CN, et al. Microbial diversity of inflamed and noninflamed gut biopsy tissues in inflammatory bowel disease. Inflamm Bowel Dis. 2007;13:675-683.
-
(2007)
Inflamm Bowel Dis
, vol.13
, pp. 675-683
-
-
Sepehri, S.1
Kotlowski, R.2
Bernstein, C.N.3
-
71
-
-
33750932588
-
Culture-independent analyses of temporal variation of the dominant fecal microbiota and targeted bacterial subgroups in Crohn's disease
-
Scanlan PD, Shanahan F, O'Mahony C, et al. Culture-independent analyses of temporal variation of the dominant fecal microbiota and targeted bacterial subgroups in Crohn's disease. J Clin Microbiol. 2006;44: 3980-3988.
-
(2006)
J Clin Microbiol
, vol.44
, pp. 3980-3988
-
-
Scanlan, P.D.1
Shanahan, F.2
O'Mahony, C.3
-
72
-
-
33645019411
-
Specificities of the fecal microbiota in inflammatory bowel disease
-
Sokol H, Seksik P, Rigottier-Gois L, et al. Specificities of the fecal microbiota in inflammatory bowel disease. Inflamm Bowel Dis. 2006; 12:106-111.
-
(2006)
Inflamm Bowel Dis
, vol.12
, pp. 106-111
-
-
Sokol, H.1
Seksik, P.2
Rigottier-Gois, L.3
-
73
-
-
33747050143
-
The bacteriology of biopsies differs between newly diagnosed, untreated, Crohn's disease and ulcerative colitis patients
-
Bibiloni R, Mangold M, Madsen KL, et al. The bacteriology of biopsies differs between newly diagnosed, untreated, Crohn's disease and ulcerative colitis patients. J Med Microbiol. 2006;55:1141-1149.
-
(2006)
J Med Microbiol
, vol.55
, pp. 1141-1149
-
-
Bibiloni, R.1
Mangold, M.2
Madsen, K.L.3
-
74
-
-
33750956239
-
Differences between tissueassociated intestinal microfloras of patients with Crohn's disease and ulcerative colitis
-
Gophna U, Sommerfeld K, Gophna S, et al. Differences between tissueassociated intestinal microfloras of patients with Crohn's disease and ulcerative colitis. J Clin Microbiol. 2006;44:4136-4141.
-
(2006)
J Clin Microbiol
, vol.44
, pp. 4136-4141
-
-
Gophna, U.1
Sommerfeld, K.2
Gophna, S.3
-
76
-
-
2342442430
-
Reduction in diversity of the colonic mucosa associated bacterial microflora in patients with active inflammatory bowel disease
-
Ott SJ, Musfeldt M, Wenderoth DF, et al. Reduction in diversity of the colonic mucosa associated bacterial microflora in patients with active inflammatory bowel disease. Gut. 2004;53:685-693.
-
(2004)
Gut
, vol.53
, pp. 685-693
-
-
Ott, S.J.1
Musfeldt, M.2
Wenderoth, D.F.3
-
77
-
-
24744444522
-
Search for localized dysbiosis in Crohn's disease ulcerations by temporal temperature gradient gel electrophoresis of 16S rRNA
-
Seksik P, Lepage P, de la Cochetiere MF, et al. Search for localized dysbiosis in Crohn's disease ulcerations by temporal temperature gradient gel electrophoresis of 16S rRNA. J Clin Microbiol. 2005;43:4654-4658.
-
(2005)
J Clin Microbiol
, vol.43
, pp. 4654-4658
-
-
Seksik, P.1
Lepage, P.2
De La Cochetiere, M.F.3
-
78
-
-
84898738612
-
The commensal bacterium Faecalibacterium prausnitzii is protective in DNBS-induced chronic moderate and severe colitis models
-
Martin R, Chain F, Miquel S, et al. The commensal bacterium Faecalibacterium prausnitzii is protective in DNBS-induced chronic moderate and severe colitis models. Inflamm Bowel Dis. 2014;20:417-430.
-
(2014)
Inflamm Bowel Dis
, vol.20
, pp. 417-430
-
-
Martin, R.1
Chain, F.2
Miquel, S.3
-
79
-
-
84902150181
-
Alterations in the intestinal microbiome (dysbiosis) as a predictor of relapse after infliximab withdrawal in Crohn's disease
-
Rajca S, Grondin V, Louis E, et al. Alterations in the intestinal microbiome (dysbiosis) as a predictor of relapse after infliximab withdrawal in Crohn's disease. Inflamm Bowel Dis. 2014;20:978-986.
-
(2014)
Inflamm Bowel Dis
, vol.20
, pp. 978-986
-
-
Rajca, S.1
Grondin, V.2
Louis, E.3
-
80
-
-
84875294514
-
Xenobiotics and the human gut microbiome: Metatranscriptomics reveal the active players
-
Ursell LK, Knight R. Xenobiotics and the human gut microbiome: metatranscriptomics reveal the active players. Cell Metab. 2013;17:317-318.
-
(2013)
Cell Metab
, vol.17
, pp. 317-318
-
-
Ursell, L.K.1
Knight, R.2
-
81
-
-
79953170241
-
Effect of antibiotic treatment on the intestinal metabolome
-
Antunes LC, Han J, Ferreira RB, et al. Effect of antibiotic treatment on the intestinal metabolome. Antimicrob Agents Chemother. 2011;55: 1494-1503.
-
(2011)
Antimicrob Agents Chemother
, vol.55
, pp. 1494-1503
-
-
Antunes, L.C.1
Han, J.2
Ferreira, R.B.3
-
82
-
-
79952756960
-
Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation
-
Dethlefsen L, Relman DA. Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation. Proc Natl Acad Sci USA. 2011;108(suppl 1):4554-4561.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 4554-4561
-
-
Dethlefsen, L.1
Relman, D.A.2
-
83
-
-
0036117798
-
Changes in the bacterial flora of the neoterminal ileum after ileocolonic resection for Crohn's disease
-
Neut C, Bulois P, Desreumaux P, et al. Changes in the bacterial flora of the neoterminal ileum after ileocolonic resection for Crohn's disease. Am J Gastroenterol. 2002;97:939-946.
-
(2002)
Am J Gastroenterol
, vol.97
, pp. 939-946
-
-
Neut, C.1
Bulois, P.2
Desreumaux, P.3
-
84
-
-
84882297193
-
Association of gut microbiota with post-operative clinical course in Crohn's disease
-
Dey N, Soergel DA, Repo S, et al. Association of gut microbiota with post-operative clinical course in Crohn's disease. BMC Gastroenterol. 2013;13:131.
-
(2013)
BMC Gastroenterol
, vol.13
, pp. 131
-
-
Dey, N.1
Soergel, D.A.2
Repo, S.3
-
85
-
-
84921481734
-
Specific mucosa-associated microbiota in Crohn's disease at the time of resection are associated with early disease recurrence: A Pilot Study
-
De Cruz P, Kang S, Wagner J, et al. Specific mucosa-associated microbiota in Crohn's disease at the time of resection are associated with early disease recurrence: a Pilot Study. J Gastroenterol Hepatol. 2015;30:268-278.
-
(2015)
J Gastroenterol Hepatol
, vol.30
, pp. 268-278
-
-
De Cruz, P.1
Kang, S.2
Wagner, J.3
-
86
-
-
4444236381
-
Short chain fatty acid regulation of signaling genes expressed by the intestinal epithelium
-
Sanderson IR. Short chain fatty acid regulation of signaling genes expressed by the intestinal epithelium. J Nutr. 2004;134:2450S-2454S.
-
(2004)
J Nutr
, vol.134
, pp. 2450S-2454S
-
-
Sanderson, I.R.1
-
87
-
-
84870322666
-
Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease
-
Erickson AR, Cantarel BL, Lamendella R, et al. Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease. PLoS One. 2012;7:e49138.
-
(2012)
PLoS One
, vol.7
, pp. e49138
-
-
Erickson, A.R.1
Cantarel, B.L.2
Lamendella, R.3
-
88
-
-
0033863238
-
Butyrate inhibits inflammatory responses through NF kappa B inhibition: Implications for Crohn's disease
-
Segain JP, Raingeard de la Bletiere D, Bourreille A, et al. Butyrate inhibits inflammatory responses through NF kappa B inhibition: implications for Crohn's disease. Gut. 2000;47:397-403.
-
(2000)
Gut
, vol.47
, pp. 397-403
-
-
Segain, J.P.1
Raingeard De La Bletiere, D.2
Bourreille, A.3
-
89
-
-
78349271212
-
Desulfovibrio bacterial species are increased in ulcerative colitis
-
Rowan F, Docherty NG, Murphy M, et al. Desulfovibrio bacterial species are increased in ulcerative colitis. Dis Colon Rectum. 2010;53: 1530-1536.
-
(2010)
Dis Colon Rectum
, vol.53
, pp. 1530-1536
-
-
Rowan, F.1
Docherty, N.G.2
Murphy, M.3
-
90
-
-
84879258302
-
Increase of faecal tryptic activity relates to changes in the intestinal microbiome: Analysis of Crohn's disease with a multidisciplinary platform
-
Midtvedt T, Zabarovsky E, Norin E, et al. Increase of faecal tryptic activity relates to changes in the intestinal microbiome: analysis of Crohn's disease with a multidisciplinary platform. PLoS One. 2013;8:e66074.
-
(2013)
PLoS One
, vol.8
, pp. e66074
-
-
Midtvedt, T.1
Zabarovsky, E.2
Norin, E.3
|