-
1
-
-
33748566229
-
Comparative genomics in eukaryotes
-
Gregory TR, editor. San Diego: Elsevier
-
Gregory TR, DeSalle R. Comparative genomics in eukaryotes. In: Gregory TR, editor. The Evolution of the Genome. San Diego: Elsevier; 2005. p. 585-675.
-
(2005)
The Evolution of the Genome
, pp. 585-675
-
-
Gregory, T.R.1
DeSalle, R.2
-
2
-
-
84856489199
-
The complete sequence of the smallest known nuclear genome from the microsporidian Encephalitozoon intestinalis
-
4355639 20865802
-
Corradi N, Pombert J-F, Farinelli L, Didier ES, Keeling PJ. The complete sequence of the smallest known nuclear genome from the microsporidian Encephalitozoon intestinalis. Nat Commun. 2010;1:77.
-
(2010)
Nat Commun
, vol.1
, pp. 77
-
-
Corradi, N.1
Pombert, J.-F.2
Farinelli, L.3
Didier, E.S.4
Keeling, P.J.5
-
6
-
-
0034160156
-
Transposable elements and host genome evolution
-
10675923
-
Kidwell MG, Lisch DR. Transposable elements and host genome evolution. Trends Ecol Evol. 2000;15(3):95-9.
-
(2000)
Trends Ecol Evol
, vol.15
, Issue.3
, pp. 95-99
-
-
Kidwell, M.G.1
Lisch, D.R.2
-
7
-
-
23944504276
-
Synergy between sequence and size in large-scale genomics
-
1:CAS:528:DC%2BD2MXps1erurw%3D 16151375
-
Gregory TR. Synergy between sequence and size in large-scale genomics. Nat Rev Genet. 2005;6:699-708.
-
(2005)
Nat Rev Genet
, vol.6
, pp. 699-708
-
-
Gregory, T.R.1
-
8
-
-
0024505998
-
Eukaryotic transposable elements and genome evolution
-
1:CAS:528:DyaK3cXhsVek 2543105
-
Finnegan DJ. Eukaryotic transposable elements and genome evolution. Trends Genet. 1989;5(4):103-7.
-
(1989)
Trends Genet
, vol.5
, Issue.4
, pp. 103-107
-
-
Finnegan, D.J.1
-
9
-
-
36249023071
-
A unified classification system for eukaryotic transposable elements
-
1:CAS:528:DC%2BD2sXhtlajtrnF 17984973
-
Wicker T, Sabot F, Hua-Van A, Bennetzen JL, Capy P, Chalhoub B, et al. A unified classification system for eukaryotic transposable elements. Nat Rev Genet. 2007;8:973-82.
-
(2007)
Nat Rev Genet
, vol.8
, pp. 973-982
-
-
Wicker, T.1
Sabot, F.2
Hua-Van, A.3
Bennetzen, J.L.4
Capy, P.5
Chalhoub, B.6
-
10
-
-
0031832807
-
Transposable elements and genome organization: A comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence
-
1:CAS:528:DyaK1cXjt1aksLY%3D 9582191
-
Kim JM, Vanguri S, Boeke JD, Gabriel A, Voytas DF. Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res. 1998;8:464-78.
-
(1998)
Genome Res
, vol.8
, pp. 464-478
-
-
Kim, J.M.1
Vanguri, S.2
Boeke, J.D.3
Gabriel, A.4
Voytas, D.F.5
-
11
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
International Human Genome Sequencing Consortium. Initial sequencing and analysis of the human genome. Nature. 2001;409:860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
-
12
-
-
0345724809
-
Diversity of retrotransposable elements in compact pufferfish genomes
-
1:CAS:528:DC%2BD3sXpt1emsb4%3D 14642744
-
Volff J-N, Bouneau L, Ozouf-Costaz C, Fischer C. Diversity of retrotransposable elements in compact pufferfish genomes. Trends Genet. 2003;19(12):674-8.
-
(2003)
Trends Genet
, vol.19
, Issue.12
, pp. 674-678
-
-
Volff, J.-N.1
Bouneau, L.2
Ozouf-Costaz, C.3
Fischer, C.4
-
13
-
-
0037965788
-
Hot L1s account for the bulk of retrotransposition in the human population
-
154336 1:CAS:528:DC%2BD3sXjs1yitrg%3D 12682288
-
Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, et al. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003;100:5280-5.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 5280-5285
-
-
Brouha, B.1
Schustak, J.2
Badge, R.M.3
Lutz-Prigge, S.4
Farley, A.H.5
Moran, J.V.6
-
14
-
-
77953880842
-
LINE-1 retrotransposition activity in human genomes
-
3013285 1:CAS:528:DC%2BC3cXovFartbg%3D 20602998
-
Beck CR, Collier P, Macfarlane C, Malig M, Kidd JM, Eichler EE, et al. LINE-1 retrotransposition activity in human genomes. Cell. 2010;141:1159-70.
-
(2010)
Cell
, vol.141
, pp. 1159-1170
-
-
Beck, C.R.1
Collier, P.2
Macfarlane, C.3
Malig, M.4
Kidd, J.M.5
Eichler, E.E.6
-
15
-
-
52949110235
-
SnapShot: Vertebrate transposons
-
1:CAS:528:DC%2BD1cXht1Gkt7bK 18854165
-
Mandal PK, Kazazian HH. SnapShot: vertebrate transposons. Cell. 2008;135:192.
-
(2008)
Cell
, vol.135
, pp. 192
-
-
Mandal, P.K.1
Kazazian, H.H.2
-
17
-
-
0037039386
-
Sequence evolution and copy number of Ty1-copia retrotransposons in diverse plant genomes
-
117550 1:CAS:528:DC%2BD38Xlt1Cmsw%3D%3D 11752395
-
Navarro-Quezada A, Schoen DJ. Sequence evolution and copy number of Ty1-copia retrotransposons in diverse plant genomes. Proc Natl Acad Sci U S A. 2002;99(1):268-73.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, Issue.1
, pp. 268-273
-
-
Navarro-Quezada, A.1
Schoen, D.J.2
-
18
-
-
84887054545
-
Population genetics and molecular evolution of DNA sequences in transposable elements. I A simulation framework
-
3813876 1:CAS:528:DC%2BC2cXhtlGjur0%3D 24002643
-
Kijima TE, Innan H. Population genetics and molecular evolution of DNA sequences in transposable elements. I A simulation framework. Genetics. 2013;195:957-67.
-
(2013)
Genetics
, vol.195
, pp. 957-967
-
-
Kijima, T.E.1
Innan, H.2
-
19
-
-
0348048755
-
L1 (LINE-1) retrotransposon diversity differs dramatically between mammals and fish
-
1:CAS:528:DC%2BD3sXpvFyrsbs%3D 14698614
-
Furano AV, Duvernell DD, Boissinot S. L1 (LINE-1) retrotransposon diversity differs dramatically between mammals and fish. Trends Genet. 2004;20(1):9-14.
-
(2004)
Trends Genet
, vol.20
, Issue.1
, pp. 9-14
-
-
Furano, A.V.1
Duvernell, D.D.2
Boissinot, S.3
-
20
-
-
84866370634
-
Horizontal transposon transfer in Eukarya: Detection, bias and perspectives
-
22798449
-
Wallau GL, Ortiz MF, Loreto ELS. Horizontal transposon transfer in Eukarya: detection, bias and perspectives. Genome Biol Evol. 2012;4:689-99.
-
(2012)
Genome Biol Evol
, vol.4
, pp. 689-699
-
-
Wallau, G.L.1
Ortiz, M.F.2
Loreto, E.L.S.3
-
21
-
-
0002452239
-
Transposable elements as selfish DNA
-
Sherratt DJ, editor. Oxford: Oxford University Press
-
Brookfield JFY. Transposable elements as selfish DNA. In: Sherratt DJ, editor. Mobile Genetic Elements. Oxford: Oxford University Press; 1995.
-
(1995)
Mobile Genetic Elements
-
-
Brookfield, J.F.Y.1
-
22
-
-
33749444113
-
Competition may determine the diversity of transposable elements
-
16814337
-
Abrusán G, Krambeck H-J. Competition may determine the diversity of transposable elements. Theor Popul Biol. 2006;70:364-75.
-
(2006)
Theor Popul Biol
, vol.70
, pp. 364-375
-
-
Abrusán, G.1
Krambeck, H.-J.2
-
23
-
-
77956382542
-
Non-long terminal repeat (non-LTR) retrotransposons: Mechanisms, recent developments, and unanswered questions
-
2881922 20462415
-
Han JS. Non-long terminal repeat (non-LTR) retrotransposons: mechanisms, recent developments, and unanswered questions. Mob DNA. 2010;1:15.
-
(2010)
Mob DNA
, vol.1
, pp. 15
-
-
Han, J.S.1
-
24
-
-
84899853495
-
Widespread and frequent horizontal transfers of transposable elements in plants
-
4009612 24518071
-
El Baidouri M, Carpentier M-C, Cooke R, Gao D, Lasserre E, Llauro C, et al. Widespread and frequent horizontal transfers of transposable elements in plants. Genome Res. 2014;24:831-8.
-
(2014)
Genome Res
, vol.24
, pp. 831-838
-
-
El Baidouri, M.1
Carpentier, M.-C.2
Cooke, R.3
Gao, D.4
Lasserre, E.5
Llauro, C.6
-
25
-
-
79551624472
-
Considering transposable element diversification in de novo annotation approaches
-
3031573 1:CAS:528:DC%2BC3MXhvFaht7w%3D 21304975
-
Flutre T, Duprat E, Feuillet C, Quesneville H. Considering transposable element diversification in de novo annotation approaches. PLoS One. 2011;6:e16526.
-
(2011)
PLoS One
, vol.6
, pp. e16526
-
-
Flutre, T.1
Duprat, E.2
Feuillet, C.3
Quesneville, H.4
-
26
-
-
1842609646
-
A new group of tyrosine recombinase-encoding retrotransposons
-
1:CAS:528:DC%2BD2cXjt1egu7c%3D 14963102
-
Goodwin TJD, Poulter RTM. A new group of tyrosine recombinase-encoding retrotransposons. Mol Biol Evol. 2004;21(4):746-59.
-
(2004)
Mol Biol Evol
, vol.21
, Issue.4
, pp. 746-759
-
-
Goodwin, T.J.D.1
Poulter, R.T.M.2
-
27
-
-
77955689247
-
Evolutionary conservation, diversity and specificity of LTR-retrotransposons in flowering plants: Insights from genome-wide analysis and multi-specific comparison
-
1:CAS:528:DC%2BC3cXhtFegtrbJ 20525006
-
Du J, Tian Z, Hans CS, Laten HM, Cannon SB, Jackson SA, et al. Evolutionary conservation, diversity and specificity of LTR-retrotransposons in flowering plants: insights from genome-wide analysis and multi-specific comparison. Plant J. 2010;63:584-98.
-
(2010)
Plant J
, vol.63
, pp. 584-598
-
-
Du, J.1
Tian, Z.2
Hans, C.S.3
Laten, H.M.4
Cannon, S.B.5
Jackson, S.A.6
-
28
-
-
23844525077
-
Repbase Update, a database of eukaryotic repetitive elements
-
1:STN:280:DC%2BD2Mvislertw%3D%3D 16093699
-
Jurka J, Kapitonov VV, Pavlicek A, Klonowski P, Kohany O, Walichiewicz J. Repbase Update, a database of eukaryotic repetitive elements. Cytogenet Genome Res. 2005;110:462-7.
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 462-467
-
-
Jurka, J.1
Kapitonov, V.V.2
Pavlicek, A.3
Klonowski, P.4
Kohany, O.5
Walichiewicz, J.6
-
29
-
-
79955649699
-
The Gypsy database (GyDB) of mobile genetic elements: Release 2.0
-
3013669 1:CAS:528:DC%2BC3sXivF2mu7k%3D 21036865
-
Llorens C, Futami R, Covelli L, Dominguez-Escriba L, Viu JM, Tamarit D, et al. The Gypsy database (GyDB) of mobile genetic elements: release 2.0. Nucleic Acids Res. 2011;39:D70-4.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. D70-D74
-
-
Llorens, C.1
Futami, R.2
Covelli, L.3
Dominguez-Escriba, L.4
Viu, J.M.5
Tamarit, D.6
-
30
-
-
84876581626
-
SINEBase: A database and tool for SINE analysis
-
3531059 1:CAS:528:DC%2BC38XhvV2ksb%2FP 23203982
-
Vassetzky NS, Kramerov DA. SINEBase: a database and tool for SINE analysis. Nucleic Acids Res. 2013;41(D1):D83-9.
-
(2013)
Nucleic Acids Res
, vol.41
, Issue.D1
, pp. D83-D89
-
-
Vassetzky, N.S.1
Kramerov, D.A.2
-
31
-
-
79956364806
-
The catalytic domain of all eukaryotic cut-and-paste transposase superfamilies
-
3093488 1:CAS:528:DC%2BC3MXmsVSktb0%3D 21518873
-
Yuan Y-W, Wessler SR. The catalytic domain of all eukaryotic cut-and-paste transposase superfamilies. Proc Natl Acad Sci U S A. 2011;108:7884-9.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 7884-7889
-
-
Yuan, Y.-W.1
Wessler, S.R.2
-
32
-
-
0032976398
-
The age and evolution of non-LTR retrotransposable elements
-
1:CAS:528:DyaK1MXjslGitbs%3D 10368957
-
Malik HS, Burke WD, Eickbush TH. The age and evolution of non-LTR retrotransposable elements. Mol Biol Evol. 1999;16(6):793-805.
-
(1999)
Mol Biol Evol
, vol.16
, Issue.6
, pp. 793-805
-
-
Malik, H.S.1
Burke, W.D.2
Eickbush, T.H.3
-
33
-
-
70350244686
-
Simple and fast classification of non-LTR retrotransposons based on phylogeny of their RT domain protein sequences
-
2829327 1:CAS:528:DC%2BD1MXhtlersrnI 19651192
-
Kapitonov VV, Tempel S, Jurka J. Simple and fast classification of non-LTR retrotransposons based on phylogeny of their RT domain protein sequences. Gene. 2009;448:207-13.
-
(2009)
Gene
, vol.448
, pp. 207-213
-
-
Kapitonov, V.V.1
Tempel, S.2
Jurka, J.3
-
34
-
-
0022203256
-
Phylogenies and the comparative method
-
Felsenstein J. Phylogenies and the comparative method. Am Nat. 1985;125:1-15.
-
(1985)
Am Nat
, vol.125
, pp. 1-15
-
-
Felsenstein, J.1
-
38
-
-
12044252802
-
Polytomies in comparative analyses of continuous characters
-
Purvis A, Garland T. Polytomies in comparative analyses of continuous characters. Syst Biol. 1993;42:569-75.
-
(1993)
Syst Biol
, vol.42
, pp. 569-575
-
-
Purvis, A.1
Garland, T.2
|