메뉴 건너뛰기




Volumn 195, Issue 3, 2013, Pages 957-967

Population genetics and molecular evolution of DNA sequences in transposable elements I. A simulation framework

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHROMOSOME; COPY NUMBER VARIATION; DIPLOIDY; DNA SEQUENCE; GENETIC PARAMETERS; MOLECULAR DYNAMICS; MOLECULAR EVOLUTION; PHYLOGENY; POINT MUTATION; POPULATION GENETICS; PRIORITY JOURNAL; TRANSPOSON;

EID: 84887054545     PISSN: 00166731     EISSN: 19432631     Source Type: Journal    
DOI: 10.1534/genetics.113.150292     Document Type: Article
Times cited : (11)

References (34)
  • 2
    • 0036250811 scopus 로고    scopus 로고
    • Alu repeats and human genomic diversity
    • Batzer, M. A., and P. L. Deininger, 2002 Alu repeats and human genomic diversity. Nat. Rev. Genet. 3: 370-379.
    • (2002) Nat. Rev. Genet , vol.3 , pp. 370-379
    • Batzer, M.A.1    Deininger, P.L.2
  • 4
    • 0022611992 scopus 로고
    • A model for DNA sequence evolution within transposable element families
    • Brookfield, J. F. Y., 1986 A model for DNA sequence evolution within transposable element families. Genetics 112: 393-407.
    • (1986) Genetics , vol.112 , pp. 393-407
    • Brookfield, J.F.Y.1
  • 6
    • 84859112628 scopus 로고    scopus 로고
    • Short-and long-term evolutionary dynamics of bacterial insertion sequences: Insights from Wolbachia endosymbionts
    • Cerveau, N., S. Leclercq, E. Leroy, D. Bouchon, and R. Cordaux, 2011 Short-and long-term evolutionary dynamics of bacterial insertion sequences: insights from Wolbachia endosymbionts. Genome Biol. Evol. 3: 1175-1186.
    • (2011) Genome Biol. Evol , vol.3 , pp. 1175-1186
    • Cerveau, N.1    Leclercq, S.2    Leroy, E.3    Bouchon, D.4    Cordaux, R.5
  • 7
    • 0025727136 scopus 로고
    • Transposable elements in natural populations with a mixture of selected and neutral insertion sites
    • Charlesworth, B., 1991 Transposable elements in natural populations with a mixture of selected and neutral insertion sites. Genet. Res. 57: 127-134.
    • (1991) Genet. Res , vol.57 , pp. 127-134
    • Charlesworth, B.1
  • 8
    • 0021077476 scopus 로고
    • The population dynamics of transposable elements
    • Charlesworth, B., and D. Charlesworth, 1983 The population dynamics of transposable elements. Genet. Res. 42: 1-27.
    • (1983) Genet. Res , vol.42 , pp. 1-27
    • Charlesworth, B.1    Charlesworth, D.2
  • 9
    • 0024836563 scopus 로고
    • The population genetics of Drosophila transposable elements
    • Charlesworth, B., and C. H. Langley, 1989 The population genetics of Drosophila transposable elements. Annu. Rev. Genet. 23: 251-287.
    • (1989) Annu. Rev. Genet , vol.23 , pp. 251-287
    • Charlesworth, B.1    Langley, C.H.2
  • 10
    • 0026468455 scopus 로고
    • The distribution of transposable elements within and between chromosomes in a population of Drosophila melanogaster. I. Element frequencies and distribution
    • Charlesworth, B., A. Lapid, and D. Canada, 1992 The distribution of transposable elements within and between chromosomes in a population of Drosophila melanogaster. I. Element frequencies and distribution. Genet. Res. 60: 103-114.
    • (1992) Genet. Res , vol.60 , pp. 103-114
    • Charlesworth, B.1    Lapid, A.2    Canada, D.3
  • 11
    • 0029299946 scopus 로고
    • Transposable elements in inbreeding and outbreeding populations
    • Charlesworth, D., and B. Charlesworth, 1995 Transposable elements in inbreeding and outbreeding populations. Genetics 140: 415-417.
    • (1995) Genetics , vol.140 , pp. 415-417
    • Charlesworth, D.1    Charlesworth, B.2
  • 12
    • 67649369319 scopus 로고    scopus 로고
    • Variation in the ratio of nucleotide substitution and indel rates across genomes in mammals and bacteria
    • Chen, J.-Q., Y. Wu, H. Yang, J. Bergelson, M. Kreitman et al., 2009 Variation in the ratio of nucleotide substitution and indel rates across genomes in mammals and bacteria. Mol. Biol. Evol. 26: 1523-1531.
    • (2009) Mol. Biol. Evol , vol.26 , pp. 1523-1531
    • Chen, J.-Q.1    Wu, Y.2    Yang, H.3    Bergelson, J.4    Kreitman, M.5
  • 14
    • 13744249313 scopus 로고    scopus 로고
    • The dynamics of transposable elements in structured populations
    • Deceliere, G., S. Charles, and C. Biémont, 2005 The dynamics of transposable elements in structured populations. Genetics 169: 467-474.
    • (2005) Genetics , vol.169 , pp. 467-474
    • Deceliere, G.1    Charles, S.2    Biémont, C.3
  • 16
    • 0020447816 scopus 로고
    • Selfish DNA: A sexually-transmitted nuclear parasites
    • Hickey, D. A., 1982 Selfish DNA: a sexually-transmitted nuclear parasites. Genetics 101: 519-531.
    • (1982) Genetics , vol.101 , pp. 519-531
    • Hickey, D.A.1
  • 17
    • 0022632187 scopus 로고
    • On the divergence of members of a transposable element family
    • Hudson, R., and N. Kaplan, 1986 On the divergence of members of a transposable element family. J. Math. Biol. 24: 207-215.
    • (1986) J. Math. Biol , vol.24 , pp. 207-215
    • Hudson, R.1    Kaplan, N.2
  • 18
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • Lander, E. S., L. M. Linton, B. Birren, C. Nusbaum, M. C. Zody et al., 2001 Initial sequencing and analysis of the human genome. Nature 409: 860-921.
    • (2001) Nature , vol.409 , pp. 860-921
    • Lander, E.S.1    Linton, L.M.2    Birren, B.3    Nusbaum, C.4    Zody, M.C.5
  • 19
    • 0020966007 scopus 로고
    • Transposable elements in Mendelian populations. I. A theory
    • Langley, C. H., J. F. Y. Brookfield, and N. Kaplan, 1983 Transposable elements in Mendelian populations. I. A theory. Genetics 104: 457-471.
    • (1983) Genetics , vol.104 , pp. 457-471
    • Langley, C.H.1    Brook, J.F.Y.2    Field3    Kaplan, N.4
  • 20
    • 0024210911 scopus 로고
    • On the role of unequal exchange in the containment of transposable element copy number
    • Langley, C. H., E. Montgomery, R. Hudson, N. Kaplan, and B. Char-lesworth, 1988 On the role of unequal exchange in the containment of transposable element copy number. Genet. Res. 52: 223-235.
    • (1988) Genet. Res , vol.52 , pp. 223-235
    • Langley, C.H.1    Montgomery, E.2    Hudson, R.3    Kaplan, N.4    Char-Lesworth, B.5
  • 21
    • 33750461976 scopus 로고    scopus 로고
    • Population genetics models of competition between transposable element subfamilies
    • Le Rouzic, A., and P. Capy, 2006 Population genetics models of competition between transposable element subfamilies. Genetics 174: 785-793.
    • (2006) Genetics , vol.174 , pp. 785-793
    • Le Rouzic, A.1    Capy, P.2
  • 23
    • 0034124187 scopus 로고    scopus 로고
    • Rates of movement of transposable elements on the second chromo-some of Drosophila melanogaster
    • Maside, X., S. Assimacopoulos, and B. Charlesworth, 2000 Rates of movement of transposable elements on the second chromo-some of Drosophila melanogaster. Genet. Res. 75: 275-284.
    • (2000) Genet. Res , vol.75 , pp. 275-284
    • Maside, X.1    Assimacopoulos, S.2    Charlesworth, B.3
  • 24
    • 0031027694 scopus 로고    scopus 로고
    • Phylogenetic analysis of a retrotransposon with implications for strong evolutionary con-straints on reverse transcriptase
    • McAllister, B. F., and J. H. Werren, 1997 Phylogenetic analysis of a retrotransposon with implications for strong evolutionary con-straints on reverse transcriptase. Mol. Biol. Evol. 14: 69-80.
    • (1997) Mol. Biol. Evol , vol.14 , pp. 69-80
    • McAllister, B.F.1    Werren, J.H.2
  • 25
    • 0034945229 scopus 로고    scopus 로고
    • Transposable element number in mixed mating populations
    • Morgan, M. T., 2001 Transposable element number in mixed mating populations. Genet. Res. 77: 261-275.
    • (2001) Genet. Res , vol.77 , pp. 261-275
    • Morgan, M.T.1
  • 26
    • 0037039386 scopus 로고    scopus 로고
    • Sequence evolution and copy number of Ty1-copia retrotransposons in diverse plant genomes
    • Navarro-Quezada, A., and D. J. Schoen, 2002 Sequence evolution and copy number of Ty1-copia retrotransposons in diverse plant genomes. Proc. Natl. Acad. Sci. USA 99: 268-273.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 268-273
    • Navarro-Quezada, A.1    Schoen, D.J.2
  • 27
    • 0029181962 scopus 로고
    • The genomic rate of transposable element movement in Drosophila melanogaster
    • Nuzhdin, S. V., and T. F. Mackay, 1995 The genomic rate of transposable element movement in Drosophila melanogaster. Mol. Biol. Evol. 12: 180-181.
    • (1995) Mol. Biol. Evol , vol.12 , pp. 180-181
    • Nuzhdin, S.V.1    Mackay, T.F.2
  • 28
    • 0021837651 scopus 로고
    • A model of duplicative transposition and gene conversion for repetitive DNA families
    • Ohta, T., 1985 A model of duplicative transposition and gene conversion for repetitive DNA families. Genetics 110: 513-524.
    • (1985) Genetics , vol.110 , pp. 513-524
    • Ohta, T.1
  • 29
    • 0038247887 scopus 로고    scopus 로고
    • Size matters: Non-LTR retrotransposable elements and ectopic recombination in Drosophila
    • Petrov, D. A., Y. T. Aminetzach, J. C. Davis, D. Bensasson, and A. E. Hirsh, 2003 Size matters: non-LTR retrotransposable elements and ectopic recombination in Drosophila. Mol. Biol. Evol. 20: 880-892.
    • (2003) Mol. Biol. Evol , vol.20 , pp. 880-892
    • Petrov, D.A.1    Aminetzach, Y.T.2    Davis, J.C.3    Bensasson, D.4    Hirsh, A.E.5
  • 30
    • 0035824017 scopus 로고    scopus 로고
    • Genetic algorithmbased model of evolutionary dynamics of class II transposable elements
    • Quesneville, H., and D. Anxolabéhère, 2001 Genetic algorithmbased model of evolutionary dynamics of class II transposable elements. J. Theor. Biol. 213: 21-30.
    • (2001) J. Theor. Biol , vol.213 , pp. 21-30
    • Quesneville, H.1    Anxolabéhère, D.2
  • 31
    • 0021868115 scopus 로고
    • Genetic differentiation of transposable elements under mutation and unbiased gene conversion
    • Slatkin, M., 1985 Genetic differentiation of transposable elements under mutation and unbiased gene conversion. Genetics 110: 145-158.
    • (1985) Genetics , vol.110 , pp. 145-158
    • Slatkin, M.1
  • 32
    • 0029095623 scopus 로고
    • Studies on the transposition rates of mobile genetic elements in a natural pop ulation of Drosophila melanogaster
    • Suh, D. S., E. H. Choi, T. Yamazaki, and K. Harada, 1995 Studies on the transposition rates of mobile genetic elements in a natural pop ulation of Drosophila melanogaster. Mol. Biol. Evol. 12: 748-758.
    • (1995) Mol. Biol. Evol , vol.12 , pp. 748-758
    • Suh, D.S.1    Choi, E.H.2    Yamazaki, T.3    Harada, K.4
  • 33
    • 0032732325 scopus 로고    scopus 로고
    • Dynamics of transposable elements under the selection model
    • Tsitrone, A., S. Charles, and C. Biémont, 1999 Dynamics of transposable elements under the selection model. Genet. Res. 74: 159-164.
    • (1999) Genet. Res , vol.74 , pp. 159-164
    • Tsitrone, A.1    Charles, S.2    Biémont, C.3
  • 34
    • 0033288975 scopus 로고    scopus 로고
    • Transposon dynamics and the breeding system
    • Wright, S. I., and D. J. Schoen, 1999 Transposon dynamics and the breeding system. Genetica 107: 139-148.
    • (1999) Genetica , vol.107 , pp. 139-148
    • Wright, S.I.1    Schoen, D.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.