-
2
-
-
83255192184
-
A peek into the complex realm of histone phosphorylation
-
Banerjee T, Chakravarti D. 2011. A peek into the complex realm of histone phosphorylation. Mol Cell Biol 31: 4858-4873.
-
(2011)
Mol Cell Biol
, vol.31
, pp. 4858-4873
-
-
Banerjee, T.1
Chakravarti, D.2
-
3
-
-
1542328960
-
Identification and distinct regulation of yeast TATA box-containing genes
-
Basehoar AD, Zanton SJ, Pugh BF. 2004. Identification and distinct regulation of yeast TATA box-containing genes. Cell 116: 699-709.
-
(2004)
Cell
, vol.116
, pp. 699-709
-
-
Basehoar, A.D.1
Zanton, S.J.2
Pugh, B.F.3
-
4
-
-
0038094501
-
Nucleosomes unfold completely at a transcriptionally active promoter
-
Boeger H, Griesenbeck J, Strattan JS, Kornberg RD. 2003. Nucleosomes unfold completely at a transcriptionally active promoter. Mol Cell 11: 1587-1598.
-
(2003)
Mol Cell
, vol.11
, pp. 1587-1598
-
-
Boeger, H.1
Griesenbeck, J.2
Strattan, J.S.3
Kornberg, R.D.4
-
5
-
-
77952411179
-
Epigenetic regulation of a murine retrotransposon by a dual histone modification mark
-
Brunmeir R, Lagger S, Simboeck E, Sawicka A, Egger G, Hagelkruys A, Zhang Y, Matthias P, Miller WJ, Seiser C. 2010. Epigenetic regulation of a murine retrotransposon by a dual histone modification mark. PLoS Genet 6: e1000927.
-
(2010)
PLoS Genet
, vol.6
, pp. e1000927
-
-
Brunmeir, R.1
Lagger, S.2
Simboeck, E.3
Sawicka, A.4
Egger, G.5
Hagelkruys, A.6
Zhang, Y.7
Matthias, P.8
Miller, W.J.9
Seiser, C.10
-
6
-
-
0034644473
-
Signaling to chromatin through histone modifications
-
Cheung P, Allis CD, Sassone-Corsi P. 2000a. Signaling to chromatin through histone modifications. Cell 103: 263-271.
-
(2000)
Cell
, vol.103
, pp. 263-271
-
-
Cheung, P.1
Allis, C.D.2
Sassone-Corsi, P.3
-
7
-
-
0033636595
-
Synergistic coupling of histone H3 phosphorylation and acetylation in response to epidermal growth factor stimulation
-
Cheung P, Tanner KG, Cheung WL, Sassone-Corsi P, Denu JM, Allis CD. 2000b. Synergistic coupling of histone H3 phosphorylation and acetylation in response to epidermal growth factor stimulation. Mol Cell 5: 905-915.
-
(2000)
Mol Cell
, vol.5
, pp. 905-915
-
-
Cheung, P.1
Tanner, K.G.2
Cheung, W.L.3
Sassone-Corsi, P.4
Denu, J.M.5
Allis, C.D.6
-
8
-
-
0038538472
-
MAP kinase-mediated phosphoacetylation of histone H3 and inducible gene regulation
-
Clayton AL, Mahadevan LC. 2003. MAP kinase-mediated phosphoacetylation of histone H3 and inducible gene regulation. FEBS Lett 546: 51-58.
-
(2003)
FEBS Lett
, vol.546
, pp. 51-58
-
-
Clayton, A.L.1
Mahadevan, L.C.2
-
9
-
-
57849109058
-
Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
-
Core LJ, Waterfall JJ, Lis JT. 2008. Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science 322: 1845-1848.
-
(2008)
Science
, vol.322
, pp. 1845-1848
-
-
Core, L.J.1
Waterfall, J.J.2
Lis, J.T.3
-
10
-
-
0038247837
-
P38 Mitogen-activated protein kinase mediates cell death and p21-activated kinase mediates cell survival during chemotherapeutic drug-induced mitotic arrest
-
Deacon K, Mistry P, Chernoff J, Blank JL, Patel R. 2003. p38 Mitogen-activated protein kinase mediates cell death and p21-activated kinase mediates cell survival during chemotherapeutic drug-induced mitotic arrest. Mol Biol Cell 14: 2071-2087.
-
(2003)
Mol Biol Cell
, vol.14
, pp. 2071-2087
-
-
Deacon, K.1
Mistry, P.2
Chernoff, J.3
Blank, J.L.4
Patel, R.5
-
11
-
-
77953710050
-
Promoter chromatin remodeling of immediate-early genes is mediated through H3 phosphorylation at either serine 28 or 10 by the MSK1 multi-protein complex
-
Drobic B, Perez-Cadahia B, Yu J, Kung SK, Davie JR. 2010. Promoter chromatin remodeling of immediate-early genes is mediated through H3 phosphorylation at either serine 28 or 10 by the MSK1 multi-protein complex. Nucleic Acids Res 38: 3196-3208.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 3196-3208
-
-
Drobic, B.1
Perez-Cadahia, B.2
Yu, J.3
Kung, S.K.4
Davie, J.R.5
-
12
-
-
4444320809
-
MAP kinases as structural adaptors and enzymatic activators in transcription complexes
-
Edmunds JW, Mahadevan LC. 2004. MAP kinases as structural adaptors and enzymatic activators in transcription complexes. J Cell Sci 117: 3715-3723.
-
(2004)
J Cell Sci
, vol.117
, pp. 3715-3723
-
-
Edmunds, J.W.1
Mahadevan, L.C.2
-
13
-
-
84855286273
-
Mechanisms establishing TLR4-responsive activation states of inflammatory response genes
-
Escoubet-Lozach L, Benner C, Kaikkonen MU, Lozach J, Heinz S, Spann NJ, Crotti A, Stender J, Ghisletti S, Reichart D, et al. 2011. Mechanisms establishing TLR4-responsive activation states of inflammatory response genes. PLoS Genet 7: e1002401.
-
(2011)
PLoS Genet
, vol.7
, pp. e1002401
-
-
Escoubet-Lozach, L.1
Benner, C.2
Kaikkonen, M.U.3
Lozach, J.4
Heinz, S.5
Spann, N.J.6
Crotti, A.7
Stender, J.8
Ghisletti, S.9
Reichart, D.10
-
14
-
-
84859867313
-
In vivo Polycomb kinetics and mitotic chromatin binding distinguish stem cells from differentiated cells
-
Fonseca JP, Steffen PA, Muller S, Lu J, Sawicka A, Seiser C, Ringrose L. 2012. In vivo Polycomb kinetics and mitotic chromatin binding distinguish stem cells from differentiated cells. Genes Dev 26: 857-871.
-
(2012)
Genes Dev
, vol.26
, pp. 857-871
-
-
Fonseca, J.P.1
Steffen, P.A.2
Muller, S.3
Lu, J.4
Sawicka, A.5
Seiser, C.6
Ringrose, L.7
-
15
-
-
84880652056
-
A stress-activated, p38 mitogen-activated protein kinase-ATF/CREB pathway regulates posttranscriptional, sequence-dependent decay of target RNAs
-
Gao J, Wagnon JL, Protacio RM, Glazko GV, Beggs M, Raj V, Davidson MK, Wahls WP. 2013. A stress-activated, p38 mitogen-activated protein kinase-ATF/CREB pathway regulates posttranscriptional, sequence-dependent decay of target RNAs. Mol Cell Biol 33: 3026-3035.
-
(2013)
Mol Cell Biol
, vol.33
, pp. 3026-3035
-
-
Gao, J.1
Wagnon, J.L.2
Protacio, R.M.3
Glazko, G.V.4
Beggs, M.5
Raj, V.6
Davidson, M.K.7
Wahls, W.P.8
-
16
-
-
77956919550
-
Polycomb group protein displacement and gene activation through MSK-dependent H3K27me3S28 phosphorylation
-
Gehani SS, Agrawal-Singh S, Dietrich N, Christophersen NS, Helin K, Hansen K. 2010. Polycomb group protein displacement and gene activation through MSK-dependent H3K27me3S28 phosphorylation. Mol Cell 39: 886-900.
-
(2010)
Mol Cell
, vol.39
, pp. 886-900
-
-
Gehani, S.S.1
Agrawal-Singh, S.2
Dietrich, N.3
Christophersen, N.S.4
Helin, K.5
Hansen, K.6
-
17
-
-
78049339834
-
MAPK signalling in cellular metabolism: Stress or wellness?
-
Gehart H, Kumpf S, Ittner A, Ricci R. 2010. MAPK signalling in cellular metabolism: stress or wellness? EMBO Rep 11: 834-840.
-
(2010)
EMBO Rep
, vol.11
, pp. 834-840
-
-
Gehart, H.1
Kumpf, S.2
Ittner, A.3
Ricci, R.4
-
18
-
-
28744458859
-
Bioconductor: Open software development for computational biology and bioinformatics
-
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, et al. 2004. Bioconductor: open software development for computational biology and bioinformatics. Genome Biol 5: R80.
-
(2004)
Genome Biol
, vol.5
, pp. R80
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
Dudoit, S.6
Ellis, B.7
Gautier, L.8
Ge, Y.9
Gentry, J.10
-
19
-
-
78149477660
-
Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulation
-
Gilchrist DA, Dos Santos G, Fargo DC, Xie B, Gao Y, Li L, Adelman K. 2010. Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulation. Cell 143: 540-551.
-
(2010)
Cell
, vol.143
, pp. 540-551
-
-
Gilchrist, D.A.1
Dos Santos, G.2
Fargo, D.C.3
Xie, B.4
Gao, Y.5
Li, L.6
Adelman, K.7
-
20
-
-
0042905956
-
Gene expression profiling of multiple histone deacetylase (HDAC) inhibitors: Defining a common gene set produced by HDAC inhibition in T24 and MDA carcinoma cell lines
-
Glaser KB, Staver MJ, Waring JF, Stender J, Ulrich RG, Davidsen SK. 2003. Gene expression profiling of multiple histone deacetylase (HDAC) inhibitors: defining a common gene set produced by HDAC inhibition in T24 and MDA carcinoma cell lines. Mol Cancer Ther 2: 151-163.
-
(2003)
Mol Cancer Ther
, vol.2
, pp. 151-163
-
-
Glaser, K.B.1
Staver, M.J.2
Waring, J.F.3
Stender, J.4
Ulrich, R.G.5
Davidsen, S.K.6
-
21
-
-
34447098370
-
A chromatin landmark and transcription initiation at most promoters in human cells
-
Guenther MG, Levine SS, Boyer LA, Jaenisch R, Young RA. 2007. A chromatin landmark and transcription initiation at most promoters in human cells. Cell 130: 77-88.
-
(2007)
Cell
, vol.130
, pp. 77-88
-
-
Guenther, M.G.1
Levine, S.S.2
Boyer, L.A.3
Jaenisch, R.4
Young, R.A.5
-
23
-
-
0019160447
-
Nerve growth factor mediates phosphorylation of specific proteins
-
Halegoua S, Patrick J. 1980. Nerve growth factor mediates phosphorylation of specific proteins. Cell 22: 571-581.
-
(1980)
Cell
, vol.22
, pp. 571-581
-
-
Halegoua, S.1
Patrick, J.2
-
24
-
-
67649648237
-
Control of inducible gene expression by signal-dependent transcriptional elongation
-
Hargreaves DC, Horng T, Medzhitov R. 2009. Control of inducible gene expression by signal-dependent transcriptional elongation. Cell 138: 129-145.
-
(2009)
Cell
, vol.138
, pp. 129-145
-
-
Hargreaves, D.C.1
Horng, T.2
Medzhitov, R.3
-
25
-
-
0036841721
-
Activation of the mouse histone deacetylase 1 gene by cooperative histone phosphorylation and acetylation
-
Hauser C, Schuettengruber B, Bartl S, Lagger G, Seiser C. 2002. Activation of the mouse histone deacetylase 1 gene by cooperative histone phosphorylation and acetylation. Mol Cell Biol 22: 7820-7830.
-
(2002)
Mol Cell Biol
, vol.22
, pp. 7820-7830
-
-
Hauser, C.1
Schuettengruber, B.2
Bartl, S.3
Lagger, G.4
Seiser, C.5
-
26
-
-
84875483461
-
Dynamic distribution of HDAC1 and HDAC2 during mitosis: Association with F-actin
-
He S, Khan DH, Winter S, Seiser C, Davie JR. 2013. Dynamic distribution of HDAC1 and HDAC2 during mitosis: association with F-actin. J Cell Physiol 228: 1525-1535.
-
(2013)
J Cell Physiol
, vol.228
, pp. 1525-1535
-
-
He, S.1
Khan, D.H.2
Winter, S.3
Seiser, C.4
Davie, J.R.5
-
27
-
-
77952567987
-
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
-
Heinz S, Benner C, Spann N, Bertolino E, Lin YC, Laslo P, Cheng JX, Murre C, Singh H, Glass CK. 2010. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol Cell 38: 576-589.
-
(2010)
Mol Cell
, vol.38
, pp. 576-589
-
-
Heinz, S.1
Benner, C.2
Spann, N.3
Bertolino, E.4
Lin, Y.C.5
Laslo, P.6
Cheng, J.X.7
Murre, C.8
Singh, H.9
Glass, C.K.10
-
28
-
-
0025769412
-
Primary response genes induced by growth factors and tumor promoters
-
Herschman HR. 1991. Primary response genes induced by growth factors and tumor promoters. Annu Rev Biochem 60: 281-319.
-
(1991)
Annu Rev Biochem
, vol.60
, pp. 281-319
-
-
Herschman, H.R.1
-
29
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang da W, Sherman BT, Lempicki RA. 2009. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4: 44-57.
-
(2009)
Nat Protoc
, vol.4
, pp. 44-57
-
-
Huang Da, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
30
-
-
0031239891
-
Acetylation of general transcription factors by histone acetyltransferases
-
Imhof A, Yang XJ, Ogryzko VV, Nakatani Y, Wolffe AP, Ge H. 1997. Acetylation of general transcription factors by histone acetyltransferases. Curr Biol 7: 689-692.
-
(1997)
Curr Biol
, vol.7
, pp. 689-692
-
-
Imhof, A.1
Yang, X.J.2
Ogryzko, V.V.3
Nakatani, Y.4
Wolffe, A.P.5
Ge, H.6
-
31
-
-
84874116331
-
Chromatin: Receiver and quarterback for cellular signals
-
Johnson DG, Dent SY. 2013. Chromatin: receiver and quarterback for cellular signals. Cell 152: 685-689.
-
(2013)
Cell
, vol.152
, pp. 685-689
-
-
Johnson, D.G.1
Dent, S.Y.2
-
32
-
-
0642336924
-
P38 MAPK interacts with actin and modulates filament assembly during skeletal muscle differentiation
-
Khurana A, Dey CS. 2003. p38 MAPK interacts with actin and modulates filament assembly during skeletal muscle differentiation. Differentiation 71: 42-50.
-
(2003)
Differentiation
, vol.71
, pp. 42-50
-
-
Khurana, A.1
Dey, C.S.2
-
33
-
-
84868115829
-
Analysis of protein mixtures from whole-cell extracts by single-run nanoLC-MS/MS using ultralong gradients
-
Kocher T, Pichler P, Swart R, Mechtler K. 2012. Analysis of protein mixtures from whole-cell extracts by single-run nanoLC-MS/MS using ultralong gradients. Nat Protoc 7: 882-890.
-
(2012)
Nat Protoc
, vol.7
, pp. 882-890
-
-
Kocher, T.1
Pichler, P.2
Swart, R.3
Mechtler, K.4
-
35
-
-
78649692076
-
Crucial function of histone deacetylase 1 for differentiation of teratomas in mice and humans
-
Lagger S, Meunier D, Mikula M, Brunmeir R, Schlederer M, Artaker M, Pusch O, Egger G, Hagelkruys A, Mikulits W, et al. 2010. Crucial function of histone deacetylase 1 for differentiation of teratomas in mice and humans. EMBO J 29: 3992-4007.
-
(2010)
EMBO J
, vol.29
, pp. 3992-4007
-
-
Lagger, S.1
Meunier, D.2
Mikula, M.3
Brunmeir, R.4
Schlederer, M.5
Artaker, M.6
Pusch, O.7
Egger, G.8
Hagelkruys, A.9
Mikulits, W.10
-
36
-
-
72849149423
-
Searching for SNPs with cloud computing
-
Langmead B, Schatz MC, Lin J, Pop M, Salzberg SL. 2009. Searching for SNPs with cloud computing. Genome Biol 10: R134.
-
(2009)
Genome Biol
, vol.10
, pp. R134
-
-
Langmead, B.1
Schatz, M.C.2
Lin, J.3
Pop, M.4
Salzberg, S.L.5
-
37
-
-
79952612932
-
Histone code pathway involving H3 S28 phosphorylation and K27 acetylation activates transcription and antagonizes polycomb silencing
-
Lau PN, Cheung P. 2011. Histone code pathway involving H3 S28 phosphorylation and K27 acetylation activates transcription and antagonizes polycomb silencing. Proc Natl Acad Sci 108: 2801-2806.
-
(2011)
Proc Natl Acad Sci
, vol.108
, pp. 2801-2806
-
-
Lau, P.N.1
Cheung, P.2
-
38
-
-
0025872683
-
Rapid histone H3 phosphorylation in response to growth factors, phorbol esters, okadaic acid, and protein synthesis inhibitors
-
Mahadevan LC, Willis AC, Barratt MJ. 1991. Rapid histone H3 phosphorylation in response to growth factors, phorbol esters, okadaic acid, and protein synthesis inhibitors. Cell 65: 775-783.
-
(1991)
Cell
, vol.65
, pp. 775-783
-
-
Mahadevan, L.C.1
Willis, A.C.2
Barratt, M.J.3
-
39
-
-
2942737394
-
Phosphorylation and acetylation of histone H3 at inducible genes: Two controversies revisited
-
discussion 111-104, 163-109
-
Mahadevan LC, Clayton AL, Hazzalin CA, Thomson S. 2004. Phosphorylation and acetylation of histone H3 at inducible genes: two controversies revisited. Novartis Found Symp 259: 102-111; discussion 111-104, 163-109.
-
(2004)
Novartis Found Symp
, vol.259
, pp. 102-111
-
-
Mahadevan, L.C.1
Clayton, A.L.2
Hazzalin, C.A.3
Thomson, S.4
-
40
-
-
79954562232
-
Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells
-
Min IM, Waterfall JJ, Core LJ, Munroe RJ, Schimenti J, Lis JT. 2011. Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells. Genes Dev 25: 742-754.
-
(2011)
Genes Dev
, vol.25
, pp. 742-754
-
-
Min, I.M.1
Waterfall, J.J.2
Core, L.J.3
Munroe, R.J.4
Schimenti, J.5
Lis, J.T.6
-
41
-
-
51649129596
-
Lineage-specific polycomb targets and de novo DNA methylation define restriction and potential of neuronal progenitors
-
Mohn F, Weber M, Rebhan M, Roloff TC, Richter J, Stadler MB, Bibel M, Schubeler D. 2008. Lineage-specific polycomb targets and de novo DNA methylation define restriction and potential of neuronal progenitors. Mol Cell 30: 755-766.
-
(2008)
Mol Cell
, vol.30
, pp. 755-766
-
-
Mohn, F.1
Weber, M.2
Rebhan, M.3
Roloff, T.C.4
Richter, J.5
Stadler, M.B.6
Bibel, M.7
Schubeler, D.8
-
42
-
-
36549061004
-
RNA polymerase is poised for activation across the genome
-
Muse GW, Gilchrist DA, Nechaev S, Shah R, Parker JS, Grissom SF, Zeitlinger J, Adelman K. 2007. RNA polymerase is poised for activation across the genome. Nat Genet 39: 1507-1511.
-
(2007)
Nat Genet
, vol.39
, pp. 1507-1511
-
-
Muse, G.W.1
Gilchrist, D.A.2
Nechaev, S.3
Shah, R.4
Parker, J.S.5
Grissom, S.F.6
Zeitlinger, J.7
Adelman, K.8
-
43
-
-
84856161647
-
The opposing transcriptional functions of Sin3a and c-Myc are required to maintain tissue homeostasis
-
Nascimento EM, Cox CL, MacArthur S, Hussain S, Trotter M, Blanco S, Suraj M, Nichols J, Kubler B, Benitah SA, et al. 2011. The opposing transcriptional functions of Sin3a and c-Myc are required to maintain tissue homeostasis. Nat Cell Biol 13: 1395-1405.
-
(2011)
Nat Cell Biol
, vol.13
, pp. 1395-1405
-
-
Nascimento, E.M.1
Cox, C.L.2
Macarthur, S.3
Hussain, S.4
Trotter, M.5
Blanco, S.6
Suraj, M.7
Nichols, J.8
Kubler, B.9
Benitah, S.A.10
-
44
-
-
74549132843
-
Global analysis of short RNAs reveals widespread promoter-proximal stalling and arrest of Pol II in Drosophila
-
Nechaev S, Fargo DC, dos Santos G, Liu L, Gao Y, Adelman K. 2010. Global analysis of short RNAs reveals widespread promoter-proximal stalling and arrest of Pol II in Drosophila. Science 327: 335-338.
-
(2010)
Science
, vol.327
, pp. 335-338
-
-
Nechaev, S.1
Fargo, D.C.2
Dos Santos, G.3
Liu, L.4
Gao, Y.5
Adelman, K.6
-
45
-
-
33846057724
-
NCBI reference sequences (RefSeq): A curated non-redundant sequence database ofgenomes, transcripts and proteins
-
Pruitt KD, Tatusova T, Maglott DR. 2007. NCBI reference sequences (RefSeq): a curated non-redundant sequence database ofgenomes, transcripts and proteins. Nucleic Acids Res 35: D61-D65.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. D61-D65
-
-
Pruitt, K.D.1
Tatusova, T.2
Maglott, D.R.3
-
46
-
-
84863304598
-
-
R Foundation for Statistical Computing, Vienna, Austria
-
R Development Core Team. 2014. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. http://www.R-project.org/.
-
(2014)
R: A Language and Environment for Statistical Computing
-
-
-
47
-
-
77951920690
-
C-Myc regulates transcriptional pause release
-
Rahl PB, Lin CY, Seila AC, Flynn RA, McCuine S, Burge CB, Sharp PA, Young RA. 2010. c-Myc regulates transcriptional pause release. Cell 141: 432-445.
-
(2010)
Cell
, vol.141
, pp. 432-445
-
-
Rahl, P.B.1
Lin, C.Y.2
Seila, A.C.3
Flynn, R.A.4
McCuine, S.5
Burge, C.B.6
Sharp, P.A.7
Young, R.A.8
-
48
-
-
67649669255
-
A unifying model for the selective regulation of inducible transcription by CpG islands and nucleosome remodeling
-
Ramirez-Carrozzi VR, Braas D, Bhatt DM, Cheng CS, Hong C, Doty KR, Black JC, Hoffmann A, Carey M, Smale ST. 2009. A unifying model for the selective regulation of inducible transcription by CpG islands and nucleosome remodeling. Cell 138: 114-128.
-
(2009)
Cell
, vol.138
, pp. 114-128
-
-
Ramirez-Carrozzi, V.R.1
Braas, D.2
Bhatt, D.M.3
Cheng, C.S.4
Hong, C.5
Doty, K.R.6
Black, J.C.7
Hoffmann, A.8
Carey, M.9
Smale, S.T.10
-
49
-
-
0027166316
-
In vivo transcriptional pausing and cap formation on three Drosophila heat shock genes
-
Rasmussen EB, Lis JT. 1993. In vivo transcriptional pausing and cap formation on three Drosophila heat shock genes. Proc Natl Acad Sci 90: 7923-7927.
-
(1993)
Proc Natl Acad Sci
, vol.90
, pp. 7923-7927
-
-
Rasmussen, E.B.1
Lis, J.T.2
-
50
-
-
75249087100
-
EdgeR: A Bioconductor package for differential expression analysis of digital gene expression data
-
Robinson MD, McCarthy DJ, Smyth GK. 2010. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26: 139-140.
-
(2010)
Bioinformatics
, vol.26
, pp. 139-140
-
-
Robinson, M.D.1
McCarthy, D.J.2
Smyth, G.K.3
-
51
-
-
0036143654
-
P38-Dependent marking of inflammatory genes for increased NF-k B recruitment
-
Saccani S, Pantano S, Natoli G. 2002. p38-Dependent marking of inflammatory genes for increased NF-k B recruitment. Nat Immunol 3: 69-75.
-
(2002)
Nat Immunol
, vol.3
, pp. 69-75
-
-
Saccani, S.1
Pantano, S.2
Natoli, G.3
-
52
-
-
84867399880
-
Histone H3 phosphorylation - A versatile chromatin modification for different occasions
-
Sawicka A, Seiser C. 2012. Histone H3 phosphorylation-a versatile chromatin modification for different occasions. Biochimie 94: 2193-2201.
-
(2012)
Biochimie
, vol.94
, pp. 2193-2201
-
-
Sawicka, A.1
Seiser, C.2
-
53
-
-
39749145198
-
Dynamic regulation of nucleosome positioning in the human genome
-
Schones DE, Cui K, Cuddapah S, Roh TY, Barski A, Wang Z, Wei G, Zhao K. 2008. Dynamic regulation of nucleosome positioning in the human genome. Cell 132: 887-898.
-
(2008)
Cell
, vol.132
, pp. 887-898
-
-
Schones, D.E.1
Cui, K.2
Cuddapah, S.3
Roh, T.Y.4
Barski, A.5
Wang, Z.6
Wei, G.7
Zhao, K.8
-
54
-
-
84887207641
-
Acetylation of RNA polymerase II regulates growth-factor-induced gene transcription inmammalian cells
-
Schroder S, Herker E, Itzen F, He D, Thomas S, Gilchrist DA, Kaehlcke K, Cho S, Pollard KS, Capra JA, et al. 2013. Acetylation of RNA polymerase II regulates growth-factor-induced gene transcription inmammalian cells. Mol Cell 52: 314-324.
-
(2013)
Mol Cell
, vol.52
, pp. 314-324
-
-
Schroder, S.1
Herker, E.2
Itzen, F.3
He, D.4
Thomas, S.5
Gilchrist, D.A.6
Kaehlcke, K.7
Cho, S.8
Pollard, K.S.9
Capra, J.A.10
-
55
-
-
78650342693
-
A phosphorylation switch regulates the transcriptional activation of cell cycle regulator p21 by histone deacetylase inhibitors
-
Simboeck E, Sawicka A, Zupkovitz G, Senese S, Winter S, Dequiedt F, Ogris E, Di Croce L, Chiocca S, Seiser C. 2010. A phosphorylation switch regulates the transcriptional activation of cell cycle regulator p21 by histone deacetylase inhibitors. J Biol Chem 285: 41062-41073.
-
(2010)
J Biol Chem
, vol.285
, pp. 41062-41073
-
-
Simboeck, E.1
Sawicka, A.2
Zupkovitz, G.3
Senese, S.4
Winter, S.5
Dequiedt, F.6
Ogris, E.7
Di Croce, L.8
Chiocca, S.9
Seiser, C.10
-
56
-
-
78649922622
-
The chromatin signaling pathway: Diverse mechanisms of recruitment of histone-modifying enzymes and varied biological outcomes
-
Smith E, Shilatifard A. 2010. The chromatin signaling pathway: diverse mechanisms of recruitment of histone-modifying enzymes and varied biological outcomes. Mol Cell 40: 689-701.
-
(2010)
Mol Cell
, vol.40
, pp. 689-701
-
-
Smith, E.1
Shilatifard, A.2
-
57
-
-
0038182524
-
MSK2 and MSK1 mediate the mitogen-and stress-induced phosphorylation of histone H3 and HMG-14
-
Soloaga A, Thomson S, Wiggin GR, Rampersaud N, Dyson MH, Hazzalin CA, Mahadevan LC, Arthur JS. 2003. MSK2 and MSK1 mediate the mitogen-and stress-induced phosphorylation of histone H3 and HMG-14. EMBO J 22: 2788-2797.
-
(2003)
EMBO J
, vol.22
, pp. 2788-2797
-
-
Soloaga, A.1
Thomson, S.2
Wiggin, G.R.3
Rampersaud, N.4
Dyson, M.H.5
Hazzalin, C.A.6
Mahadevan, L.C.7
Arthur, J.S.8
-
58
-
-
0033636892
-
Acetylation regulates transcription factor activity at multiple levels
-
Soutoglou E, Katrakili N, Talianidis I. 2000. Acetylation regulates transcription factor activity at multiple levels. Mol Cell 5: 745-751.
-
(2000)
Mol Cell
, vol.5
, pp. 745-751
-
-
Soutoglou, E.1
Katrakili, N.2
Talianidis, I.3
-
59
-
-
34347268407
-
Substrate specificity and catalytic efficiency of aldo-keto reductases with phospholipid aldehydes
-
Spite M, Baba SP, Ahmed Y, Barski OA, Nijhawan K, Petrash JM, Bhatnagar A, Srivastava S. 2007. Substrate specificity and catalytic efficiency of aldo-keto reductases with phospholipid aldehydes. Biochem J 405: 95-105.
-
(2007)
Biochem J
, vol.405
, pp. 95-105
-
-
Spite, M.1
Baba, S.P.2
Ahmed, Y.3
Barski, O.A.4
Nijhawan, K.5
Petrash, J.M.6
Bhatnagar, A.7
Srivastava, S.8
-
60
-
-
0029790656
-
FGF and stress regulate CREB and ATF-1 via a pathway involving p38 MAP kinase and MAPKAP kinase-2
-
Tan Y, Rouse J, Zhang A, Cariati S, Cohen P, Comb MJ. 1996. FGF and stress regulate CREB and ATF-1 via a pathway involving p38 MAP kinase and MAPKAP kinase-2. EMBO J 15: 4629-4642.
-
(1996)
EMBO J
, vol.15
, pp. 4629-4642
-
-
Tan, Y.1
Rouse, J.2
Zhang, A.3
Cariati, S.4
Cohen, P.5
Comb, M.J.6
-
61
-
-
0035694785
-
Independent dynamic regulation of histone phosphorylation and acetylation during immediate-early gene induction
-
Thomson S, Clayton AL, Mahadevan LC. 2001. Independent dynamic regulation of histone phosphorylation and acetylation during immediate-early gene induction. Mol Cell 8: 1231-1241.
-
(2001)
Mol Cell
, vol.8
, pp. 1231-1241
-
-
Thomson, S.1
Clayton, A.L.2
Mahadevan, L.C.3
-
62
-
-
79951851704
-
XPB, a subunit of TFIIH, is a target of the natural product triptolide
-
Titov DV, Gilman B, He QL, Bhat S, Low WK, Dang Y, Smeaton M, Demain AL, Miller PS, Kugel JF, et al. 2011. XPB, a subunit of TFIIH, is a target of the natural product triptolide. Nat Chem Biol 7: 182-188.
-
(2011)
Nat Chem Biol
, vol.7
, pp. 182-188
-
-
Titov, D.V.1
Gilman, B.2
He, Q.L.3
Bhat, S.4
Low, W.K.5
Dang, Y.6
Smeaton, M.7
Demain, A.L.8
Miller, P.S.9
Kugel, J.F.10
-
63
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-seq
-
Trapnell C, Pachter L, Salzberg SL. 2009. TopHat: discovering splice junctions with RNA-seq. Bioinformatics 25: 1105-1111.
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
64
-
-
84864452351
-
Systematic dissection of roles for chromatin regulators in a yeast stress response
-
Weiner A, Chen HV, Liu CL, Rahat A, Klien A, Soares L, Gudipati M, Pfeffner J, Regev A, Buratowski S, et al. 2012. Systematic dissection of roles for chromatin regulators in a yeast stress response. PLoS Biol 10: e1001369.
-
(2012)
PLoS Biol
, vol.10
, pp. e1001369
-
-
Weiner, A.1
Chen, H.V.2
Liu, C.L.3
Rahat, A.4
Klien, A.5
Soares, L.6
Gudipati, M.7
Pfeffner, J.8
Regev, A.9
Buratowski, S.10
-
65
-
-
0036193378
-
MSK1 and MSK2 are required for the mitogen-and stress-induced phosphorylation of CREB and ATF1 in fibroblasts
-
Wiggin GR, Soloaga A, Foster JM, Murray-Tait V, Cohen P, Arthur JS. 2002. MSK1 and MSK2 are required for the mitogen-and stress-induced phosphorylation of CREB and ATF1 in fibroblasts. Mol Cell Biol 22: 2871-2881.
-
(2002)
Mol Cell Biol
, vol.22
, pp. 2871-2881
-
-
Wiggin, G.R.1
Soloaga, A.2
Foster, J.M.3
Murray-Tait, V.4
Cohen, P.5
Arthur, J.S.6
-
66
-
-
45749128943
-
Modulation of 14-3-3 interaction with phosphorylated histone H3 by combinatorial modification patterns
-
Winter S, Fischle W, Seiser C. 2008a. Modulation of 14-3-3 interaction with phosphorylated histone H3 by combinatorial modification patterns. Cell Cycle 7: 1336-1342.
-
(2008)
Cell Cycle
, vol.7
, pp. 1336-1342
-
-
Winter, S.1
Fischle, W.2
Seiser, C.3
-
67
-
-
38049018539
-
14-3-3 proteins recognize a histone code at histone H3 and are required for transcriptional activation
-
Winter S, Simboeck E, Fischle W, Zupkovitz G, Dohnal I, Mechtler K, Ammerer G, Seiser C. 2008b. 14-3-3 proteins recognize a histone code at histone H3 and are required for transcriptional activation. EMBO J 27: 88-99.
-
(2008)
EMBO J
, vol.27
, pp. 88-99
-
-
Winter, S.1
Simboeck, E.2
Fischle, W.3
Zupkovitz, G.4
Dohnal, I.5
Mechtler, K.6
Ammerer, G.7
Seiser, C.8
-
68
-
-
0038511129
-
Histone H3 phosphorylation by IKK - A is critical for cytokine-induced gene expression
-
Yamamoto Y, Verma UN, Prajapati S, Kwak YT, Gaynor RB. 2003. Histone H3 phosphorylation by IKK-a is critical for cytokine-induced gene expression. Nature 423: 655-659.
-
(2003)
Nature
, vol.423
, pp. 655-659
-
-
Yamamoto, Y.1
Verma, U.N.2
Prajapati, S.3
Kwak, Y.T.4
Gaynor, R.B.5
-
69
-
-
33846214719
-
Prevalence of the initiator over the TATA box in human and yeast genes and identification of DNA motifs enriched in human TATA-less core promoters
-
Yang C, Bolotin E, Jiang T, Sladek FM, Martinez E. 2007. Prevalence of the initiator over the TATA box in human and yeast genes and identification of DNA motifs enriched in human TATA-less core promoters. Gene 389: 52-65.
-
(2007)
Gene
, vol.389
, pp. 52-65
-
-
Yang, C.1
Bolotin, E.2
Jiang, T.3
Sladek, F.M.4
Martinez, E.5
-
70
-
-
36549013619
-
RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo
-
Zeitlinger J, Stark A, Kellis M, Hong JW, Nechaev S, Adelman K, Levine M, Young RA. 2007. RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo. Nat Genet 39: 1512-1516.
-
(2007)
Nat Genet
, vol.39
, pp. 1512-1516
-
-
Zeitlinger, J.1
Stark, A.2
Kellis, M.3
Hong, J.W.4
Nechaev, S.5
Adelman, K.6
Levine, M.7
Young, R.A.8
-
71
-
-
53849146020
-
Model-based analysis of ChIP-seq (MACS)
-
Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, et al. 2008. Model-based analysis of ChIP-seq (MACS). Genome Biol 9: R137.
-
(2008)
Genome Biol
, vol.9
, pp. R137
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
Bernstein, B.E.6
Nusbaum, C.7
Myers, R.M.8
Brown, M.9
Li, W.10
-
72
-
-
77951947707
-
ChIPpeakAnno: A bioconductor package to annotate ChIP-seq and ChIP-chip data
-
Zhu LJ, Gazin C, Lawson ND, Pages H, Lin SM, Lapointe DS, Green MR. 2010. ChIPpeakAnno: a bioconductor package to annotate ChIP-seq and ChIP-chip data. BMC Bioinformatics 11: 237.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 237
-
-
Zhu, L.J.1
Gazin, C.2
Lawson, N.D.3
Pages, H.4
Lin, S.M.5
Lapointe, D.S.6
Green, M.R.7
-
73
-
-
70149112313
-
Histone crosstalk between H3S10ph and H4K16ac generates a histone code that mediates transcription elongation
-
Zippo A, Serafini R, Rocchigiani M, Pennacchini S, Krepelova A, Oliviero S. 2009. Histone crosstalk between H3S10ph and H4K16ac generates a histone code that mediates transcription elongation. Cell 138: 1122-1136.
-
(2009)
Cell
, vol.138
, pp. 1122-1136
-
-
Zippo, A.1
Serafini, R.2
Rocchigiani, M.3
Pennacchini, S.4
Krepelova, A.5
Oliviero, S.6
|