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Volumn 52, Issue 3, 2013, Pages 314-324

Acetylation of RNA Polymerase II Regulates Growth-Factor-Induced Gene Transcription in Mammalian Cells

(16)  Schröder, Sebastian a,b   Herker, Eva a,c   Itzen, Friederike d   He, Daniel a,b   Thomas, Sean a,b   Gilchrist, Daniel A e   Kaehlcke, Katrin a,b   Cho, Sungyoo a,b   Pollard, Katherine S a,b   Capra, John A a,b   Schnölzer, Martina f   Cole, Philip A g   Geyer, Matthias d,h   Bruneau, Benoit G a,b   Adelman, Karen e   Ott, Melanie a,b  


Author keywords

[No Author keywords available]

Indexed keywords

EARLY GROWTH RESPONSE FACTOR 2; EPIDERMAL GROWTH FACTOR; GROWTH FACTOR; PROTEIN C FOS; RNA POLYMERASE II;

EID: 84887207641     PISSN: 10972765     EISSN: 10974164     Source Type: Journal    
DOI: 10.1016/j.molcel.2013.10.009     Document Type: Article
Times cited : (94)

References (50)
  • 1
    • 84871699564 scopus 로고    scopus 로고
    • Promoter-proximal pausing of RNA polymerase II: emerging roles in metazoans
    • Adelman K., Lis J.T. Promoter-proximal pausing of RNA polymerase II: emerging roles in metazoans. Nat. Rev. Genet. 2012, 13:720-731.
    • (2012) Nat. Rev. Genet. , vol.13 , pp. 720-731
    • Adelman, K.1    Lis, J.T.2
  • 2
    • 26844493853 scopus 로고    scopus 로고
    • Integrator, a multiprotein mediator of small nuclear RNA processing, associates with the C-terminal repeat of RNA polymerase II
    • Baillat D., Hakimi M.-A., Näär A.M., Shilatifard A., Cooch N., Shiekhattar R. Integrator, a multiprotein mediator of small nuclear RNA processing, associates with the C-terminal repeat of RNA polymerase II. Cell 2005, 123:265-276.
    • (2005) Cell , vol.123 , pp. 265-276
    • Baillat, D.1    Hakimi, M.-A.2    Näär, A.M.3    Shilatifard, A.4    Cooch, N.5    Shiekhattar, R.6
  • 3
    • 0023148157 scopus 로고
    • Localization of an alpha-amanitin resistance mutation in the gene encoding the largest subunit of mouse RNA polymerase II
    • Bartolomei M.S., Corden J.L. Localization of an alpha-amanitin resistance mutation in the gene encoding the largest subunit of mouse RNA polymerase II. Mol. Cell. Biol. 1987, 7:586-594.
    • (1987) Mol. Cell. Biol. , vol.7 , pp. 586-594
    • Bartolomei, M.S.1    Corden, J.L.2
  • 4
    • 64249139132 scopus 로고    scopus 로고
    • RNA Pol II accumulates at promoters of growth genes during developmental arrest
    • Baugh L.R., Demodena J., Sternberg P.W. RNA Pol II accumulates at promoters of growth genes during developmental arrest. Science 2009, 324:92-94.
    • (2009) Science , vol.324 , pp. 92-94
    • Baugh, L.R.1    Demodena, J.2    Sternberg, P.W.3
  • 7
    • 23844445184 scopus 로고    scopus 로고
    • Role of the mammalian RNA polymerase II C-terminal domain (CTD) nonconsensus repeats in CTD stability and cell proliferation
    • Chapman R.D., Conrad M., Eick D. Role of the mammalian RNA polymerase II C-terminal domain (CTD) nonconsensus repeats in CTD stability and cell proliferation. Mol. Cell. Biol. 2005, 25:7665-7674.
    • (2005) Mol. Cell. Biol. , vol.25 , pp. 7665-7674
    • Chapman, R.D.1    Conrad, M.2    Eick, D.3
  • 9
    • 0033636595 scopus 로고    scopus 로고
    • Synergistic coupling of histone H3 phosphorylation and acetylation in response to epidermal growth factor stimulation
    • Cheung P., Tanner K.G., Cheung W.L., Sassone-Corsi P., Denu J.M., Allis C.D. Synergistic coupling of histone H3 phosphorylation and acetylation in response to epidermal growth factor stimulation. Mol. Cell 2000, 5:905-915.
    • (2000) Mol. Cell , vol.5 , pp. 905-915
    • Cheung, P.1    Tanner, K.G.2    Cheung, W.L.3    Sassone-Corsi, P.4    Denu, J.M.5    Allis, C.D.6
  • 11
    • 57849109058 scopus 로고    scopus 로고
    • Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
    • Core L.J., Waterfall J.J., Lis J.T. Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science 2008, 322:1845-1848.
    • (2008) Science , vol.322 , pp. 1845-1848
    • Core, L.J.1    Waterfall, J.J.2    Lis, J.T.3
  • 12
    • 79956367114 scopus 로고    scopus 로고
    • Dynamic acetylation of all lysine-4 trimethylated histone H3 is evolutionarily conserved and mediated by p300/CBP
    • Crump N.T., Hazzalin C.A., Bowers E.M., Alani R.M., Cole P.A., Mahadevan L.C. Dynamic acetylation of all lysine-4 trimethylated histone H3 is evolutionarily conserved and mediated by p300/CBP. Proc. Natl. Acad. Sci. USA 2011, 108:7814-7819.
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 7814-7819
    • Crump, N.T.1    Hazzalin, C.A.2    Bowers, E.M.3    Alani, R.M.4    Cole, P.A.5    Mahadevan, L.C.6
  • 14
    • 0037013851 scopus 로고    scopus 로고
    • Transcriptional synergy between Tat and PCAF is dependent on the binding of acetylated Tat to the PCAF bromodomain
    • Dorr A., Kiermer V., Pedal A., Rackwitz H.-R., Henklein P., Schubert U., Zhou M.-M., Verdin E., Ott M. Transcriptional synergy between Tat and PCAF is dependent on the binding of acetylated Tat to the PCAF bromodomain. EMBO J. 2002, 21:2715-2723.
    • (2002) EMBO J. , vol.21 , pp. 2715-2723
    • Dorr, A.1    Kiermer, V.2    Pedal, A.3    Rackwitz, H.-R.4    Henklein, P.5    Schubert, U.6    Zhou, M.-M.7    Verdin, E.8    Ott, M.9
  • 15
    • 0028296414 scopus 로고
    • Molecular cloning and functional analysis of the adenovirus E1A-associated 300-kD protein (p300) reveals a protein with properties of a transcriptional adaptor
    • Eckner R., Ewen M.E., Newsome D., Gerdes M., DeCaprio J.A., Lawrence J.B., Livingston D.M. Molecular cloning and functional analysis of the adenovirus E1A-associated 300-kD protein (p300) reveals a protein with properties of a transcriptional adaptor. Genes Dev. 1994, 8:869-884.
    • (1994) Genes Dev. , vol.8 , pp. 869-884
    • Eckner, R.1    Ewen, M.E.2    Newsome, D.3    Gerdes, M.4    DeCaprio, J.A.5    Lawrence, J.B.6    Livingston, D.M.7
  • 19
    • 67849122301 scopus 로고    scopus 로고
    • Using ChIP-chip and ChIP-seq to study the regulation of gene expression: genome-wide localization studies reveal widespread regulation of transcription elongation
    • Gilchrist D.A., Fargo D.C., Adelman K. Using ChIP-chip and ChIP-seq to study the regulation of gene expression: genome-wide localization studies reveal widespread regulation of transcription elongation. Methods 2009, 48:398-408.
    • (2009) Methods , vol.48 , pp. 398-408
    • Gilchrist, D.A.1    Fargo, D.C.2    Adelman, K.3
  • 20
    • 0030797585 scopus 로고    scopus 로고
    • Activation of p53 sequence-specific DNA binding by acetylation of the p53 C-terminal domain
    • Gu W., Roeder R.G. Activation of p53 sequence-specific DNA binding by acetylation of the p53 C-terminal domain. Cell 1997, 90:595-606.
    • (1997) Cell , vol.90 , pp. 595-606
    • Gu, W.1    Roeder, R.G.2
  • 21
    • 34447098370 scopus 로고    scopus 로고
    • A chromatin landmark and transcription initiation at most promoters in human cells
    • Guenther M.G., Levine S.S., Boyer L.A., Jaenisch R., Young R.A. A chromatin landmark and transcription initiation at most promoters in human cells. Cell 2007, 130:77-88.
    • (2007) Cell , vol.130 , pp. 77-88
    • Guenther, M.G.1    Levine, S.S.2    Boyer, L.A.3    Jaenisch, R.4    Young, R.A.5
  • 22
    • 33646066806 scopus 로고    scopus 로고
    • Synergistic functions of SII and p300 in productive activator-dependent transcription of chromatin templates
    • Guermah M., Palhan V.B., Tackett A.J., Chait B.T., Roeder R.G. Synergistic functions of SII and p300 in productive activator-dependent transcription of chromatin templates. Cell 2006, 125:275-286.
    • (2006) Cell , vol.125 , pp. 275-286
    • Guermah, M.1    Palhan, V.B.2    Tackett, A.J.3    Chait, B.T.4    Roeder, R.G.5
  • 23
    • 80555125095 scopus 로고    scopus 로고
    • RNAP II CTD phosphorylated on threonine-4 is required for histone mRNA 3' end processing
    • Hsin J.-P., Sheth A., Manley J.L. RNAP II CTD phosphorylated on threonine-4 is required for histone mRNA 3' end processing. Science 2011, 334:683-686.
    • (2011) Science , vol.334 , pp. 683-686
    • Hsin, J.-P.1    Sheth, A.2    Manley, J.L.3
  • 26
  • 27
    • 0033499866 scopus 로고    scopus 로고
    • Biochemical analysis of distinct activation functions in p300 that enhance transcription initiation with chromatin templates
    • Kraus W.L., Manning E.T., Kadonaga J.T. Biochemical analysis of distinct activation functions in p300 that enhance transcription initiation with chromatin templates. Mol. Cell. Biol. 1999, 19:8123-8135.
    • (1999) Mol. Cell. Biol. , vol.19 , pp. 8123-8135
    • Kraus, W.L.1    Manning, E.T.2    Kadonaga, J.T.3
  • 28
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • Langmead B., Salzberg S.L. Fast gapped-read alignment with Bowtie 2. Nat. Methods 2012, 9:357-359.
    • (2012) Nat. Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 29
    • 0037621888 scopus 로고    scopus 로고
    • Transcriptional activation by thyroid hormone receptor-beta involves chromatin remodeling, histone acetylation, and synergistic stimulation by p300 and steroid receptor coactivators
    • Lee K.C., Li J., Cole P.A., Wong J., Kraus W.L. Transcriptional activation by thyroid hormone receptor-beta involves chromatin remodeling, histone acetylation, and synergistic stimulation by p300 and steroid receptor coactivators. Mol. Endocrinol. 2003, 17:908-922.
    • (2003) Mol. Endocrinol. , vol.17 , pp. 908-922
    • Lee, K.C.1    Li, J.2    Cole, P.A.3    Wong, J.4    Kraus, W.L.5
  • 30
    • 77958150026 scopus 로고    scopus 로고
    • Genetic organization, length conservation, and evolution of RNA polymerase II carboxyl-terminaldomain
    • Liu P., Kenney J.M., Stiller J.W., Greenleaf A.L. Genetic organization, length conservation, and evolution of RNA polymerase II carboxyl-terminaldomain. Mol. Biol. Evol. 2010, 27:2628-2641.
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 2628-2641
    • Liu, P.1    Kenney, J.M.2    Stiller, J.W.3    Greenleaf, A.L.4
  • 31
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method
    • Livak K.J., Schmittgen T.D. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 2001, 25:402-408.
    • (2001) Methods , vol.25 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 32
    • 0026731557 scopus 로고
    • Human general transcription factor IIH phosphorylates the C-terminal domain of RNA polymerase II
    • Lu H., Zawel L., Fisher L., Egly J.-M., Reinberg D. Human general transcription factor IIH phosphorylates the C-terminal domain of RNA polymerase II. Nature 1992, 358:641-645.
    • (1992) Nature , vol.358 , pp. 641-645
    • Lu, H.1    Zawel, L.2    Fisher, L.3    Egly, J.-M.4    Reinberg, D.5
  • 33
    • 0029011873 scopus 로고
    • Purification of P-TEFb, a transcription factor required for the transition into productive elongation
    • Marshall N.F., Price D.H. Purification of P-TEFb, a transcription factor required for the transition into productive elongation. J.Biol. Chem. 1995, 270:12335-12338.
    • (1995) J.Biol. Chem. , vol.270 , pp. 12335-12338
    • Marshall, N.F.1    Price, D.H.2
  • 34
    • 0029959881 scopus 로고    scopus 로고
    • Control of RNA polymerase II elongation potential by a novel carboxyl-terminal domain kinase
    • Marshall N.F., Peng J., Xie Z., Price D.H. Control of RNA polymerase II elongation potential by a novel carboxyl-terminal domain kinase. J.Biol. Chem. 1996, 271:27176-27183.
    • (1996) J.Biol. Chem. , vol.271 , pp. 27176-27183
    • Marshall, N.F.1    Peng, J.2    Xie, Z.3    Price, D.H.4
  • 37
    • 79954562232 scopus 로고    scopus 로고
    • Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells
    • Min I.M., Waterfall J.J., Core L.J., Munroe R.J., Schimenti J., Lis J.T. Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells. Genes Dev. 2011, 25:742-754.
    • (2011) Genes Dev. , vol.25 , pp. 742-754
    • Min, I.M.1    Waterfall, J.J.2    Core, L.J.3    Munroe, R.J.4    Schimenti, J.5    Lis, J.T.6
  • 39
    • 80054729999 scopus 로고    scopus 로고
    • Using ChIP-seq technology to generate high-resolution profiles of histone modifications
    • O'Geen H., Echipare L., Farnham P.J. Using ChIP-seq technology to generate high-resolution profiles of histone modifications. Methods Mol. Biol. 2011, 791:265-286.
    • (2011) Methods Mol. Biol. , vol.791 , pp. 265-286
    • O'Geen, H.1    Echipare, L.2    Farnham, P.J.3
  • 40
    • 78651505152 scopus 로고    scopus 로고
    • Characterization of HIV Tat modifications using novel methyl-lysine-specific antibodies
    • Pagans S., Sakane N., Schnölzer M., Ott M. Characterization of HIV Tat modifications using novel methyl-lysine-specific antibodies. Methods 2011, 53:91-96.
    • (2011) Methods , vol.53 , pp. 91-96
    • Pagans, S.1    Sakane, N.2    Schnölzer, M.3    Ott, M.4
  • 41
    • 0026552386 scopus 로고
    • DNA binding provides a signal for phosphorylation of the RNA polymerase II heptapeptide repeats
    • Peterson S.R., Dvir A., Anderson C.W., Dynan W.S. DNA binding provides a signal for phosphorylation of the RNA polymerase II heptapeptide repeats. Genes Dev. 1992, 6:426-438.
    • (1992) Genes Dev. , vol.6 , pp. 426-438
    • Peterson, S.R.1    Dvir, A.2    Anderson, C.W.3    Dynan, W.S.4
  • 42
    • 0028893897 scopus 로고
    • Elongation and premature termination of transcripts initiated from c-fos and c-myc promoters show dissimilar patterns
    • Plet A., Eick D., Blanchard J.M. Elongation and premature termination of transcripts initiated from c-fos and c-myc promoters show dissimilar patterns. Oncogene 1995, 10:319-328.
    • (1995) Oncogene , vol.10 , pp. 319-328
    • Plet, A.1    Eick, D.2    Blanchard, J.M.3
  • 43
    • 84887135816 scopus 로고    scopus 로고
    • R Core Team. R: A Language and Environment for Statistical Computing.
    • R Core Team (2012). R: A Language and Environment for Statistical Computing. http://www.r-project.org/.
    • (2012)
  • 45
    • 0024282827 scopus 로고
    • The RNA polymerase II molecule at the 5' end of the uninduced hsp70 gene of D. melanogaster is transcriptionally engaged
    • Rougvie A.E., Lis J.T. The RNA polymerase II molecule at the 5' end of the uninduced hsp70 gene of D. melanogaster is transcriptionally engaged. Cell 1988, 54:795-804.
    • (1988) Cell , vol.54 , pp. 795-804
    • Rougvie, A.E.1    Lis, J.T.2
  • 46
    • 58149376976 scopus 로고    scopus 로고
    • The epidermal growth factor receptor ligands at a glance
    • Schneider M.R., Wolf E. The epidermal growth factor receptor ligands at a glance. J.Cell. Physiol. 2009, 218:460-466.
    • (2009) J.Cell. Physiol. , vol.218 , pp. 460-466
    • Schneider, M.R.1    Wolf, E.2
  • 49
    • 77952857912 scopus 로고    scopus 로고
    • A signal-noise model for significance analysis of ChIP-seq with negative control
    • Xu H., Handoko L., Wei X., Ye C., Sheng J., Wei C.-L., Lin F., Sung W.-K. A signal-noise model for significance analysis of ChIP-seq with negative control. Bioinformatics 2010, 26:1199-1204.
    • (2010) Bioinformatics , vol.26 , pp. 1199-1204
    • Xu, H.1    Handoko, L.2    Wei, X.3    Ye, C.4    Sheng, J.5    Wei, C.-L.6    Lin, F.7    Sung, W.-K.8


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