메뉴 건너뛰기




Volumn 10, Issue 11, 2009, Pages

Searching for SNPs with cloud computing

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ARTICLE; CHROMOSOME 22; COMPUTER PROGRAM; DIPLOIDY; GENE FREQUENCY; GENE SEQUENCE; GENOTYPE; HAPLOIDY; HETEROZYGOSITY; HOMOZYGOSITY; HUMAN; HUMAN CHROMOSOME; HUMAN GENOME; SENSITIVITY AND SPECIFICITY; SINGLE NUCLEOTIDE POLYMORPHISM; X CHROMOSOME; ALGORITHM; ALLELE; BIOLOGICAL MODEL; BIOLOGY; CHROMOSOME; COMPUTER; COMPUTER SIMULATION; DNA SEQUENCE; GENETICS; HETEROZYGOTE; METHODOLOGY; ULTRASTRUCTURE;

EID: 72849149423     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/gb-2009-10-11-r134     Document Type: Article
Times cited : (391)

References (30)
  • 6
    • 66449121652 scopus 로고    scopus 로고
    • Finding the fifth base: genome-wide sequencing of cytosine methylation.
    • 10.1101/gr.083451.108, 19273618
    • Lister R, Ecker JR. Finding the fifth base: genome-wide sequencing of cytosine methylation. Genome Res 2009, 19:959-966. 10.1101/gr.083451.108, 19273618.
    • (2009) Genome Res , vol.19 , pp. 959-966
    • Lister, R.1    Ecker, J.R.2
  • 7
    • 73049112582 scopus 로고    scopus 로고
    • Extracting transcription factor targets from ChIP-Seq data.
    • 10.1093/nar/gkp536, 2761252, 19553195
    • Tuteja G, White P, Schug J, Kaestner KH. Extracting transcription factor targets from ChIP-Seq data. Nucleic Acids Res 2009, 37:e113. 10.1093/nar/gkp536, 2761252, 19553195.
    • (2009) Nucleic Acids Res , vol.37
    • Tuteja, G.1    White, P.2    Schug, J.3    Kaestner, K.H.4
  • 8
    • 46249106990 scopus 로고    scopus 로고
    • Mapping and quantifying mammalian transcriptomes by RNA-Seq.
    • 10.1038/nmeth.1226, 18516045
    • Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 2008, 5:621-628. 10.1038/nmeth.1226, 18516045.
    • (2008) Nat Methods , vol.5 , pp. 621-628
    • Mortazavi, A.1    Williams, B.A.2    McCue, K.3    Schaeffer, L.4    Wold, B.5
  • 9
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: discovering splice junctions with RNA-Seq.
    • 10.1093/bioinformatics/btp120, 2672628, 19289445
    • Trapnell C, Pachter L, Salzberg SL. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 2009, 25:1105-1111. 10.1093/bioinformatics/btp120, 2672628, 19289445.
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 10
    • 76349123877 scopus 로고    scopus 로고
    • Illumina Presents Development Roadmap for Scaling its Genome Analyzer: Innovations to substantially increase output, decrease cost, and expand applications
    • Illumina Presents Development Roadmap for Scaling its Genome Analyzer: Innovations to substantially increase output, decrease cost, and expand applications. , http://investor.illumina.com/phoenix.zhtml?c=121127&p=irol-newsArtic le_print&ID=1252407&highlight=
  • 11
    • 70249089090 scopus 로고    scopus 로고
    • Single-molecule sequencing of an individual human genome.
    • 10.1038/nbt.1561, 19668243
    • Pushkarev D, Neff NF, Quake SR. Single-molecule sequencing of an individual human genome. Nat Biotechnol 2009, 27:847-852. 10.1038/nbt.1561, 19668243.
    • (2009) Nat Biotechnol , vol.27 , pp. 847-852
    • Pushkarev, D.1    Neff, N.F.2    Quake, S.R.3
  • 12
    • 66449136667 scopus 로고    scopus 로고
    • ABySS: a parallel assembler for short read sequence data.
    • 10.1101/gr.089532.108, 2694472, 19251739
    • Simpson JT, Wong K, Jackman SD, Schein JE, Jones SJ, Birol I. ABySS: a parallel assembler for short read sequence data. Genome Res 2009, 19:1117-1123. 10.1101/gr.089532.108, 2694472, 19251739.
    • (2009) Genome Res , vol.19 , pp. 1117-1123
    • Simpson, J.T.1    Wong, K.2    Jackman, S.D.3    Schein, J.E.4    Jones, S.J.5    Birol, I.6
  • 15
    • 84870452716 scopus 로고    scopus 로고
    • Apache Hadoop
    • Apache Hadoop. , http://hadoop.apache.org/
  • 16
    • 65649120715 scopus 로고    scopus 로고
    • CloudBurst: highly sensitive read mapping with MapReduce.
    • 10.1093/bioinformatics/btp236, 2682523, 19357099
    • Schatz MC. CloudBurst: highly sensitive read mapping with MapReduce. Bioinformatics 2009, 25:1363-1369. 10.1093/bioinformatics/btp236, 2682523, 19357099.
    • (2009) Bioinformatics , vol.25 , pp. 1363-1369
    • Schatz, M.C.1
  • 17
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.
    • 10.1186/gb-2009-10-3-r25, 2690996, 19261174
    • Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 2009, 10:R25. 10.1186/gb-2009-10-3-r25, 2690996, 19261174.
    • (2009) Genome Biol , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 18
    • 66449114324 scopus 로고    scopus 로고
    • SNP detection for massively parallel whole-genome resequencing.
    • 10.1101/gr.088013.108, 2694485, 19420381
    • Li R, Li Y, Fang X, Yang H, Wang J, Kristiansen K. SNP detection for massively parallel whole-genome resequencing. Genome Res 2009, 19:1124-1132. 10.1101/gr.088013.108, 2694485, 19420381.
    • (2009) Genome Res , vol.19 , pp. 1124-1132
    • Li, R.1    Li, Y.2    Fang, X.3    Yang, H.4    Wang, J.5    Kristiansen, K.6
  • 19
    • 40049104732 scopus 로고    scopus 로고
    • SOAP: short oligonucleotide alignment program.
    • 10.1093/bioinformatics/btn025, 18227114
    • Li R, Li Y, Kristiansen K, Wang J. SOAP: short oligonucleotide alignment program. Bioinformatics 2008, 24:713-714. 10.1093/bioinformatics/btn025, 18227114.
    • (2008) Bioinformatics , vol.24 , pp. 713-714
    • Li, R.1    Li, Y.2    Kristiansen, K.3    Wang, J.4
  • 20
    • 84859216733 scopus 로고    scopus 로고
    • Crossbow: Whole Genome Resequencing using Cloud Computing.
    • Crossbow: Whole Genome Resequencing using Cloud Computing. , http://bowtie-bio.sourceforge.net/crossbow/
  • 21
    • 78149305944 scopus 로고    scopus 로고
    • Amazon Elastic Compute Cloud
    • Amazon Elastic Compute Cloud. , http://aws.amazon.com/ec2/
  • 23
    • 76349124443 scopus 로고    scopus 로고
    • YanHuang Project: YH1 Genome Database
    • YanHuang Project: YH1 Genome Database. , http://yh.genomics.org.cn/
  • 24
    • 67649141016 scopus 로고    scopus 로고
    • Amazon Simple Storage Service
    • Amazon Simple Storage Service. , http://aws.amazon.com/s3/
  • 27
    • 2642582338 scopus 로고    scopus 로고
    • Sort Benchmark Home Page.
    • Sort Benchmark Home Page. , http://sortbenchmark.org/
  • 29
    • 76349100774 scopus 로고    scopus 로고
    • Model-based quality assessment and base-calling for second-generation sequencing data.
    • Corrada Bravo H, Irizarry RA. Model-based quality assessment and base-calling for second-generation sequencing data. Biometrics
    • Biometrics
    • Corrada Bravo, H.1    Irizarry, R.A.2
  • 30
    • 52649157765 scopus 로고    scopus 로고
    • Substantial biases in ultra-short read data sets from high-throughput DNA sequencing.
    • 10.1093/nar/gkn425, 2532726, 18660515
    • Dohm JC, Lottaz C, Borodina T, Himmelbauer H. Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. Nucleic Acids Res 2008, 36:e105. 10.1093/nar/gkn425, 2532726, 18660515.
    • (2008) Nucleic Acids Res , vol.36
    • Dohm, J.C.1    Lottaz, C.2    Borodina, T.3    Himmelbauer, H.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.