How the genome got a life span

New Genetics and Society

Volumn 34, Issue 2, 2015, Pages 152-176

  Lappé, Martine ^a   Landecker, Hannah ^b  

^a Och Spine at New York Presbyterian Hospitals   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Aging; Development; Embodiment; Environmental epigenetics; Health

Indexed keywords

ADOLESCENCE; ARTICLE; BIOLOGY; CHROMATIN; CHROMOSOME; DNA METHYLATION; DNA SEQUENCE; DNA STRUCTURE; EPIGENETICS; FETUS DEVELOPMENT; GENOME; GENOMICS; HUMAN; LIFE CYCLE STAGE; LIFESPAN; PHENOTYPE; PREGNANCY; PRIORITY JOURNAL;

EID: 84929243304     PISSN: 14636778     EISSN: 14699915     Source Type: Journal    
DOI: 10.1080/14636778.2015.1034851     Document Type: Article

References (83)

1. Abel, J. L., and E. F. Rissman. 2013. "Running-Induced Epigenetic and Gene Expression Changes in the Adolescent Brain. " International Journal of Developmental Neuroscience 31:328-333. doi:10.1016/j.ijdevneu.2012.11.002.
2. Anderson, O. S., K. E. Sant, and D. C. Dolinoy. 2012. "Nutrition and Epigenetics: An Interplay of Dietary Methyl Donors, One-Carbon Metabolism and DNA Methylation. " Journal of Nutritional Biochemistry 23:853-859. doi:10.1016/j.jnutbio.2012.03.003.
3. Badeaux, A. I., and Y. Shi. 2013. "Emerging Roles for Chromatin as a Signal Integration and Storage Platform." Nature Reviews Molecular Cell Biology 14(4):211-224. doi:10.1038/nrm3545.
4. Bakulski, K. M., L. S. Rozek, D. C. Dolinoy, H. L. Paulson, and H. Hu. 2012. "Alzheimer's Disease and Environmental Exposure to Lead: The Epidemiologic Evidence and Potential Role of Epigenetics." Current Alzheimer Research 9(5):563-573. doi:10.2174/156720512800617991.
5. Barker, D. J. P. 1992. The Fetal and Infant Origins of Adult Disease. London: British Medical Journal Books.
6. Barlow, D. P. 1995. "Gametic Imprinting in Mammals." Science 270(5242):1610-1613. doi:10. 1126/science.270.5242.1610.
7. Bellamy, L., J.-P. Casas, A. D. Hingorani, and D. J. Williams. 2007. "Pre-Eclampsia and Risk of Cardiovascular Disease and Cancer in Later Life: Systematic Review and Meta-analysis." British Medical Journal 335(7627):974-974. doi:10.1136/bmj.39335.385301. BE.
8. Best, J. D., and N. Carey. 2013. "The Epigenetics of Normal Pregnancy." Obstetric Medicine: The Medicine of Pregnancy 6(1):3-7. doi:10.1258/om.2011.110070.
9. Biro, F. M., and J. Deardorff. 2013. "Identifying Opportunities for Cancer Prevention During Preadolescence and Adolescence: Puberty as a Window of Susceptibility." Journal of Adolescent Health 52(2):S15-S20. doi:10.1016/j.jadohealth.2012.09.019.
10. Black, J. C., and J. R. Whetstine. 2014. "Chromatin Landscape: Methylation Beyond Transcription. " Epigenetics 6(1):9-15. doi:10.4161/epi.6.1.13331.
11. Bocklandt, S., W. Lin, M. E. Sehl, F. J. Sánchez, J. S. Sinsheimer, S. Horvath, and E. Vilain. 2011. "Epigenetic Predictor of Age." PLoS One 6(6):e14821. doi:10.1371/journal.pone.0014821.
12. Bollati, V., J. Schwartz, R. Wright, A. Litonjua, L. Tarantini, H. Suh, D. Sparrow, P. Vokonas, and A. Baccarelli. 2009. "Decline in Genomic DNA Methylation Through Aging in a Cohort of Elderly Subjects." Mechanisms of Ageing and Development 130(4):234-239. doi:10.1016/j.mad.2008. 12.003.
13. Burdge, G. C., and K. A. Lillycrop. 2012. "Folic Acid Supplementation in Pregnancy: Are There Devils in the Detail?" British Journal of Nutrition 108(11):1924-1930. doi:10.1017/S0007114512003765.
14. Champagne, F. A. 2010. "Early Adversity and Developmental Outcomes Interaction Between Genetics, Epigenetics, and Social Experiences Across the Life Span. " Perspectives on Psychological Science 5(5):564-574. doi:10.1177/1745691610383494.
15. Dempster, E. L., C. C. Wong, K. J. Lester, J. Berrage, A. M. Gregory, J. Mill, and T. C. Eley. 2014. "Genome-Wide Methylomic Analysis of Monozygotic Twins Discordant for Adolescent Depression. " Biological Psychiatry 76(12):977-983. doi:10.1016/j.biopsych.2014.04.013.
16. Dolinoy, D. C., D. Huang, and R. L. Jirtle. 2007. "Maternal Nutrient Supplementation Counteracts Bisphenol A-Induced DNA Hypomethylation in Early Development." Proceedings of the National Academy of Sciences of the United States of America 104(32):13056-13061. doi:10.1073/pnas.0703739104.
17. Doyle, R. 1997. On Beyond Living: Rhetorical Transformations of the Life Sciences. Palo Alto, CA: Stanford University Press.
18. Faulk, C., and D. C. Dolinoy. 2014. "Timing Is Everything." Epigenetics 6(7):791-797. doi:10. 4161/epi.6.7.16209.
19. Fleming, T. P., W. Y. Kwong, R. Porter, E. Ursell, I. Fesenko, A. Wilkins, D. J. Miller, A. J. Watkins, and J. J. Eckert. 2004. "The Embryo and Its Future." Biological of Reproduction 71(4):1046-1054. doi:10.1095/biolreprod.104.030957.
20. Foucault, M. 1973. The Birth of the Clinic: An Archaeology of Medical Perception. London: Tavistock.
21. Fraga, M. F., E. Ballestar, M. F. Paz, S. Ropero, F. Setien, M. L. Ballestar, D. Heine-Suñer, et al. 2005. "Epigenetic Differences Arise During the Lifetime of Monozygotic Twins." Proceedings of the National Academy of Sciences of the United States of America 102(30):10604-10609. doi:10. 1073/pnas.0500398102.
22. Gorelick, R. 2004. "Neo-Lamarkian Medicine." Medical Hypotheses 62(2):299-303. doi:10.1016/S0306-9877 (03) 00329-3.
23. Griesemer, J. 2002. "What Is 'Epi' About Epigenetics." Annual New York Academy of Sciences 981:1-14. doi:10.1111/j.1749-6632.2002.tb04914.x.
24. Haig, D. 2004. "The (Dual) Origin of Epigenetics." Cold Spring Harbor Symposia on Quantitative Biology 69:67-70. doi:10.1101/sqb.2004.69.67.
25. Halfon, N., K. Larson, M. Lu, E. Tullis, and S. Russ. 2014. "Lifecourse Health Development: Past, Present, and Future." Maternal and Child Health Journal 18(2):344-365. doi:10.1007/s/10995-013-1346-2.
26. Hinde, Katherine. 2007. "First-Time Macaque Mothers Bias Milk Composition in Favor of Sons." Current Biology 17(22):R958-R959. doi:10.1016/j.cub.2007.09.029.
27. Hogg, K., E. M. Price, C. W. Hanna, and W. P. Robinson. 2012. "Prenatal and Perinatal Environmental Influences on the Human Fetal and Placental Epigenome." Clinical Pharmacology & Therapeutics 92(6):716-726. doi:10.1038/clpt.2012.141.
28. Holliday, R., and J. Pugh. 1975. "DNA Modification Mechanisms and Gene Activity During Development." Science 187(4173):226-232.
29. Hopwood, N. 2000. "Producing Development: The Anatomy of Human Embryos and the Norms of Wilhelm His." Bulletin of the History of Medicine 74(1):29-79. doi:10.1353/bhm.2000.0020.
30. Hopwood, N., S. Schaffer, and J. Secord. 2010. "Seriality and Scientific Objects in the Nineteenth Century." History of Science 48(161):251-285.
31. Horvath, S. 2013. "DNA Methylation Age of Human Tissues and Cell Types." Genome Biology 14(10):R115. doi:10.1186/gb-2013-14-10-r115.
32. Horvath, S., W. Erhart, M. Brosch, O. Ammerpohl, W. Von Schönfels, M. Ahrens, N. Heits, et al. 2014. "Obesity Accelerates Epigenetic Aging of Human Liver." Proceedings of the National Academy of Sciences of the United States of America 111(43):15538-15543.
33. Hou, L., X. Zhang, Y. Zheng, S. Wang, C. Dou, L. Guo, H. M. Byun, et al. 2014. "Altered Methylation in Tandem Repeat Elements and Elemental Component Levels in Inhalable Air Particles." Environmental and Molecular Mutagenesis 55(3):256-265. doi:10.1002/em.21829.
34. Huidobro, C., A. F. Fernandez, and M. F. Fraga. 2013. "Aging Epigenetics: Causes and Consequences." Molecular Aspects of Medicine 34(4):765-781. doi:10.1016/j.mam.2012.06.006.
35. Issa, J. P. J., Y. L. Ottaviano, P. Celano, S. R. Hamilton, N. E. Davidson, and S. B. Baylin. 1994. "Methylation of the Oestrogen Receptor CpG Island Links Ageing and Neoplasia in Human Colon. " Nature Genetics 7(4):536-540. doi:10.1038/ng0894-536.
36. Jablonka, E., and M. Lamb. 1989. "The Inheritance of Acquired Epigenetic Variation. " Journal of Theoretical Biology 139:69-83. doi:10.1016/S0022-5193 (89) 80058-X.
37. Jones, P. A., and S. B. Baylin. 2007. "The Epigenomics of Cancer." Cell 128(4):683-692. doi:10. 1016/j.cell.2007.01.029.
38. Lahiri, D. K., and B. Maloney. 2010. "The "LEARn" (Latent Early-Life Associated Regulation) Model Integrates Environmental Risk Factors and the Developmental Basis of Alzheimer's Disease, and Proposes Remedial Steps." Experimental Gerontology 45(4):291-296. doi:10. 2174/156720507780362164.
39. Landecker, H. 2013. "Postindustrial Metabolism: Fat Knowledge." Public Culture 25(3):495-522. doi:10.1215/08992363-2144625.
40. Landecker, H. 2015. "Commentary: The Information of Conformation. " International Journal of Epidemiology. doi:10.1093/ije/dyv022.
41. Lane, M., R. L. Robker, and S. A. Robertson. 2014. "Parenting from Before Conception. " Science 345(6198):756-760. doi:10.1126/science.1254400.
42. Lappé, M. 2014. "Taking Care: Anticipation, Extraction, and the Politics of Temporality in Prospective Autism Science." BioSocieties 9(3):304-328. doi:10.1057/biosoc.2014.14.
43. Lappé, M., and H. Landecker. Forthcoming. "Sociology in a Time of Genomic Instability: Copy Number Variation, Somatic Mosaicism, and the Fallen Genome." Advances in Medical Sociology 16.
44. La Salle, J. M. 2014. "A Genomic Point-of-View on Environmental Factors Influencing the Human Brain Methylome." Epigenetics 6(7):862-869. doi:10.4161/epi.6.7.16353.
45. Lévesque, M. L., K. F. Casey, M. Syzf, E. Ismaylova, V. Ly, M. P. Verner, M. Suderman, et al. 2014. "Genome-Wide DNA Methylation Variability in Adolescent Monozygotic Twins Followed Since Birth." Epigenetics 9(10):1410-1422. doi:10.4161/15592294.2014.970060.
46. Lock, Margaret. Forthcoming. "Comprehending Embodiment in the Age of the Epigenome." Current Anthropology.
47. Maienschein, J. 2003. Whose View of Life? Embryos, Cloning, and Stem Cells. Cambridge, MA: Harvard University Press.
48. Mansfield, B. 2012. "Race and the New Epigenetic Biopolitics of Environmental Health." BioSocieties 7(4):352-372. doi:10.1057/biosoc.2012.22.
49. Maxwell, P. H., W. C. Burhans, and M. J. Curcio. 2011. "Retrotransposition Is Associated with Genome Instability During Chronological Aging." Proceedings of the National Academy of Sciences of the United States of America 108(51):20376-20381.
50. Maze, I., K.-M. Noh, and C. D. Allis. 2012. "Histone Regulation in the CNS: Basic Principles of Epigenetic Plasticity." Neuropsychopharmacology 38(1):3-22. doi:10.1038/npp. 2012.124.
51. Meloni, M. 2014. "The Social Brain Meets the Reactive Genome: Neuroscience, Epigenetics and the New Social Biology." Frontiers in Human Neuroscience 8. doi:10.3389/fnhum.2014.00309.
52. Meloni, M., and G. Testa. 2014. "Scrutinizing the Epigenetics Revolution. " BioSocieties 9(4):431-456. doi:10.1057/biosoc.2014.22.
53. Miao, F., Z. Chen, S. Genuth, A. Paterson, L. Zhang, X. Wu, S. M. Li, et al. 2014. "Evaluating the Role of Epigenetic Histone Modifications in the Metabolic Memory of Type 1 Diabetes." Diabetes 63(5):1748-1762. doi:10.2337/db13-1251.
54. Parylak, S. L., W. Deng, and F. H. Gage. 2013. "Mother's Milk Programs Offspring's Cognition. " Nature Neuroscience 17(1):8-9. doi:10.1038/nn. 3611.
55. Petherick, A. A. 2010. "Development: Mother's Milk: A Rich Opportunity." Nature 468(7327):S5-S7. doi:10.1038/468S5a.
56. Pollack, R. 1995. Signs of Life: The Language and Meanings of DNA. New York, NY: Houghton Mifflin.
57. Powe, C. E., C. D. Knott, and N. Conklin-Brittain. 2010. "Infant Sex Predicts Breast Milk Energy Content." American Journal of Human Biology 22(1):50-54. doi:10.1002/ajhb.20941.
58. Relton, C. L. 2014. "What Is It About Boys?" International Journal of Epidemiology 43(1):5-7. doi:10.1093/ije/dyu017.
59. Richardson, S. 2013. Sex Itself: The Search for Male and Female in the Human Genome. Chicago, IL: Chicago University Press.
60. Richardson, S. 2015. "Maternal Bodies in the Postgenomic Order: Gender and the Explanatory Landscape of Epigenetics." In Postgenomics: Perspectives on Biology After the Genome, edited by S. Richardson and H. Stevens, 210-232. Durham: Duke University Press.
61. Riggs, A. D. 1975. "X-Inactivation, Differentiation, and DNA Methylation. " Cytogenetic and Genome Research 14(1):9-25. doi:10.1159/000130315.
62. Roth, T. L., F. D. Lubin, A. J. Funk, and J. D. Sweatt. 2009. "Lasting Epigenetic Influence of Early-Life Adversity on the BDNF Gene." Biological Psychiatry 65(9):760-769. doi:10.1016/j. biopsych.2008.11.028.
63. Rusiecki, J. A., L. Chen, V. Srikantan, L. Zhang, L. Yan, M. L. Polin, and A. Baccarelli. 2012. "DNA Methylation in Repetitive Elements and Post-Traumatic Stress Disorder: A Case-Control Study of US Military Service Members." Epigenomics 4(1):29-40. doi:10.2217/epi.11.116.
64. Sasaki, A., W. De Vaga, S. Sivanathan, S. St-Cyr, and P. O. McGowan. 2014. "Maternal High-Fat Diet Alters Anxiety Behavior and Glucocorticoid Signaling in Adolescent Offspring." Neuroscience 272:92-101. doi:10.1016/j.neuroscience.2014.04.012.
65. Schroeder, D. I., and J. M. La Salle. 2013. "How Has the Study of the Human Placenta Aided Our Understanding of Partially Methylated Genes?" Epigenomics 5(6):645-654. doi:10.2217/epi.13.62.
66. Shim, J., T. Mukherjee, B. C. Mondal, T. Liu, G. C. Young, D. P. Wijewarnasuriya, and U. Banerjee. 2013. "Olfactory Control of Blood Progenitor Maintenance." Cell 155(5):1141-1153. doi:10. 1016/j.cell.2013.10.032.
67. Singh, I. 2012. "Human Development, Nature and Nurture: Working Beyond the Divide." BioSocieties 7(3):308-321. doi:10.1057/biosoc.2012.20.
68. Steegers-Theunissen, R. P. M., J. Twigt, V. Pestinger, and K. D. Sinclair. 2013. "The Periconceptional Period, Reproduction and Long-Term Health of Offspring: The Importance of One-Carbon Metabolism." Human Reproduction Update 19(6):640-655. doi:10.1093/humupd/dmt041.
69. Steffen, P. A., and L. Ringrose. 2014. "What Are Memories Made Of? How Polycomb and Trithorax Proteins Mediate Epigenetic Memory." Nature Reviews Molecular Cell Biology (5):340-356. doi:10.1038/nrm3789.
70. Stevens, H. 2013. Life Out of Sequence: A Data-Driven History of Bioinformatics. Chicago, IL: Chicago University Press.
71. Su, S., Z. Haidong, X. Xiaojing, X. Wang, Y. Dong, G. Kapuku, F. Treiber, B. Gurin, H. Snieder, and X. Wang. 2014. "DNA Methylation of the LY86 Gene is Associated with Obesity, Insulin Resistance, and Inflammation. " Twin Research in Human Genetics 17(3):183-191. doi:10.1017/thg. 2014.22.
72. Surén, P., C. Roth, M. Bresnahan, M. Haugen, M. Hornig, D. Hirtz, K. K. Lie, et al. 2013. "Association Between Maternal Use of Folic Acid Supplements and Risk of Autism Spectrum Disorders in Children. " JAMA 309(6):570-577. doi:10.1001/jama.2012.155925.
73. Therizols, P., R. S. Illingworth, C. Courilleau, S. Boyle, A. J. Wood, and W. A. Bickmore. 2014. "Chromatin Decondensation Is Sufficient to Alter Nuclear Organization in Embryonic Stem Cells." Science 346(6214):1238-1242. doi:10.1126/science.1259587.
74. Van Der Knaap, L. J., J. M. Schaefer, I. H. A. Franken, F. C. Verhulst, F. V. A. Van Oort, and H. Riese. 2014. "Catethol-O-Methyltransferase Gene Methylation and Substance Use in Adolescents: The TRAILS Study." Genetics, Brain, and Behavior 13:618-625. doi:10.1111/gbb.12147.
75. Vaquero, A., and D. Reinberg. 2009. "Calorie Restriction and the Exercise of Chromatin. " Genes & Development 23(16):1849-1869. doi:10.1101/gad.1807009.
76. Waddington, C. H. 1942. "The Epigenotype." Endeavour 1:18-20.
77. Waggoner, M. 2013. "Motherhood Preconceived: The Emergence of the Preconception Health and Health Care Initiative." Journal of Health Politics, Policy, and Law 38(2):345-371. doi:10. 1215/03616878-1966333.
78. Wagner, W., C. I. Weidner, and Q. Lin. 2015. "Do Age-Associated DNA Methylation Changes Increase the Risk of Malignant Transformation?" BioEssays 37(1):20-24. doi:10.1002/bies. 201400063.
79. Waterland, R. A. 2014. "Epigenetic Mechanisms Affecting Regulation of Energy Balance: Many Questions, Few Answers." Annual Review of Nutrition 34:337-355. doi:10.1146/annurevnutr-071813-105315.
80. Wellmann, J. 2010. Die Form des Werdens: eine Kulturgeschichte der Embryologie 1760-1830. Göttingen: Wallstein.
81. Werker, J. F., and T. K. Hensch. 2015. "Critical Periods in Speech Perception: New Directions." Annual Review of Psychology 66:173-196. doi:10.1146/annurev-psych-010814-015104.
82. Wills, T., J. Sandy, and A. Yaeger. 2000. "Temperament and Adolescent Substance Use: An Epigenetic Approach to Risk and Protection. " Journal of Personality 68 (6). doi:10.1111/1467-6494.00129.
83. Wolffe, A. P., and D. Guschin. 2000. "Review: Chromatin Structural Features and Targets That Regulate Transcription. " Journal of Structural Biology 129(2-3):102-122. doi:10.1006/jsbi.2000. 4217.