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Volumn 58, Issue 3, 2015, Pages 431-439

A Role for REP sequences in regulating translation

Author keywords

[No Author keywords available]

Indexed keywords

ALANINE; ASPARTIC ACID; EXORIBONUCLEASE; RIBONUCLEASE; RNA HELICASE; ESCHERICHIA COLI PROTEIN; MESSENGER RNA; NRDA PROTEIN, E COLI; NRDB PROTEIN, E COLI; RIBONUCLEOSIDE DIPHOSPHATE REDUCTASE; RIBONUCLEOTIDE REDUCTASE;

EID: 84928929668     PISSN: 10972765     EISSN: 10974164     Source Type: Journal    
DOI: 10.1016/j.molcel.2015.03.019     Document Type: Article
Times cited : (28)

References (34)
  • 1
    • 27144467868 scopus 로고    scopus 로고
    • Elevation of RNase R in response to multiple stress conditions
    • Chen C., Deutscher M.P. Elevation of RNase R in response to multiple stress conditions. J.Biol. Chem. 2005, 280:34393-34396.
    • (2005) J.Biol. Chem. , vol.280 , pp. 34393-34396
    • Chen, C.1    Deutscher, M.P.2
  • 2
    • 77950232101 scopus 로고    scopus 로고
    • RNase R is a highly unstable protein regulated by growth phase and stress
    • Chen C., Deutscher M.P. RNase R is a highly unstable protein regulated by growth phase and stress. RNA 2010, 16:667-672.
    • (2010) RNA , vol.16 , pp. 667-672
    • Chen, C.1    Deutscher, M.P.2
  • 3
    • 0037077311 scopus 로고    scopus 로고
    • Purification and characterization of the Escherichia coli exoribonuclease RNase R. Comparison with RNase II
    • Cheng Z.F., Deutscher M.P. Purification and characterization of the Escherichia coli exoribonuclease RNase R. Comparison with RNase II. J.Biol. Chem. 2002, 277:21624-21629.
    • (2002) J.Biol. Chem. , vol.277 , pp. 21624-21629
    • Cheng, Z.F.1    Deutscher, M.P.2
  • 4
    • 0038652098 scopus 로고    scopus 로고
    • Quality control of ribosomal RNA mediated by polynucleotide phosphorylase and RNase R
    • Cheng Z.F., Deutscher M.P. Quality control of ribosomal RNA mediated by polynucleotide phosphorylase and RNase R. Proc. Natl. Acad. Sci. USA 2003, 100:6388-6393.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 6388-6393
    • Cheng, Z.F.1    Deutscher, M.P.2
  • 5
    • 12344330602 scopus 로고    scopus 로고
    • An important role for RNase R in mRNA decay
    • Cheng Z.F., Deutscher M.P. An important role for RNase R in mRNA decay. Mol. Cell 2005, 17:313-318.
    • (2005) Mol. Cell , vol.17 , pp. 313-318
    • Cheng, Z.F.1    Deutscher, M.P.2
  • 6
    • 0038797797 scopus 로고    scopus 로고
    • RelE toxins from bacteria and Archaea cleave mRNAs on translating ribosomes, which are rescued by tmRNA
    • Christensen S.K., Gerdes K. RelE toxins from bacteria and Archaea cleave mRNAs on translating ribosomes, which are rescued by tmRNA. Mol. Microbiol. 2003, 48:1389-1400.
    • (2003) Mol. Microbiol. , vol.48 , pp. 1389-1400
    • Christensen, S.K.1    Gerdes, K.2
  • 7
    • 77957219323 scopus 로고
    • Invivo interaction of the Escherichia coli integration host factor with its specific binding sites
    • Engelhorn M., Boccard F., Prentki P., Geiselmann J. Invivo interaction of the Escherichia coli integration host factor with its specific binding sites. Nucleic Acids Res. 1995, 23:2959-2965.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 2959-2965
    • Engelhorn, M.1    Boccard, F.2    Prentki, P.3    Geiselmann, J.4
  • 8
    • 0030698083 scopus 로고    scopus 로고
    • Invivo cleavage of Escherichia coli BIME-2 repeats by DNA gyrase: genetic characterization of the target and identification of the cut site
    • Espéli O., Boccard F. Invivo cleavage of Escherichia coli BIME-2 repeats by DNA gyrase: genetic characterization of the target and identification of the cut site. Mol. Microbiol. 1997, 26:767-777.
    • (1997) Mol. Microbiol. , vol.26 , pp. 767-777
    • Espéli, O.1    Boccard, F.2
  • 9
    • 0035976716 scopus 로고    scopus 로고
    • Transcription attenuation associated with bacterial repetitive extragenic BIME elements
    • Espéli O., Moulin L., Boccard F. Transcription attenuation associated with bacterial repetitive extragenic BIME elements. J.Mol. Biol. 2001, 314:375-386.
    • (2001) J.Mol. Biol. , vol.314 , pp. 375-386
    • Espéli, O.1    Moulin, L.2    Boccard, F.3
  • 10
    • 78649617733 scopus 로고    scopus 로고
    • Non-stop mRNA decay initiates at the ribosome
    • Ge Z., Mehta P., Richards J., Karzai A.W. Non-stop mRNA decay initiates at the ribosome. Mol. Microbiol. 2010, 78:1159-1170.
    • (2010) Mol. Microbiol. , vol.78 , pp. 1159-1170
    • Ge, Z.1    Mehta, P.2    Richards, J.3    Karzai, A.W.4
  • 11
    • 0035171382 scopus 로고    scopus 로고
    • Emerging views on tmRNA-mediated protein tagging and ribosome rescue
    • Gillet R., Felden B. Emerging views on tmRNA-mediated protein tagging and ribosome rescue. Mol. Microbiol. 2001, 42:879-885.
    • (2001) Mol. Microbiol. , vol.42 , pp. 879-885
    • Gillet, R.1    Felden, B.2
  • 12
    • 0025303243 scopus 로고
    • DNA polymerase I and a protein complex bind specifically to E.coli palindromic unit highly repetitive DNA: implications for bacterial chromosome organization
    • Gilson E., Perrin D., Hofnung M. DNA polymerase I and a protein complex bind specifically to E.coli palindromic unit highly repetitive DNA: implications for bacterial chromosome organization. Nucleic Acids Res. 1990, 18:3941-3952.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 3941-3952
    • Gilson, E.1    Perrin, D.2    Hofnung, M.3
  • 13
    • 0032079329 scopus 로고    scopus 로고
    • The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system
    • Gottesman S., Roche E., Zhou Y., Sauer R.T. The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system. Genes Dev. 1998, 12:1338-1347.
    • (1998) Genes Dev. , vol.12 , pp. 1338-1347
    • Gottesman, S.1    Roche, E.2    Zhou, Y.3    Sauer, R.T.4
  • 14
    • 0024835265 scopus 로고
    • Selection of the initiator tRNAby Escherichia coli initiation factors
    • Hartz D., McPheeters D.S., Gold L. Selection of the initiator tRNAby Escherichia coli initiation factors. Genes Dev. 1989, 3(12A):1899-1912.
    • (1989) Genes Dev. , vol.3 , Issue.12 A , pp. 1899-1912
    • Hartz, D.1    McPheeters, D.S.2    Gold, L.3
  • 15
    • 0242361562 scopus 로고    scopus 로고
    • Cleavage of the A site mRNA codon during ribosome pausing provides a mechanism for translational quality control
    • Hayes C.S., Sauer R.T. Cleavage of the A site mRNA codon during ribosome pausing provides a mechanism for translational quality control. Mol. Cell 2003, 12:903-911.
    • (2003) Mol. Cell , vol.12 , pp. 903-911
    • Hayes, C.S.1    Sauer, R.T.2
  • 16
    • 0024213532 scopus 로고
    • Repetitive extragenic palindromic sequences, mRNA stability and gene expression: evolution by gene conversion? A review
    • Higgins C.F., McLaren R.S., Newbury S.F. Repetitive extragenic palindromic sequences, mRNA stability and gene expression: evolution by gene conversion? A review. Gene 1988, 72:3-14.
    • (1988) Gene , vol.72 , pp. 3-14
    • Higgins, C.F.1    McLaren, R.S.2    Newbury, S.F.3
  • 17
    • 0030024281 scopus 로고    scopus 로고
    • Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA
    • Keiler K.C., Waller P.R., Sauer R.T. Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA. Science 1996, 271:990-993.
    • (1996) Science , vol.271 , pp. 990-993
    • Keiler, K.C.1    Waller, P.R.2    Sauer, R.T.3
  • 18
    • 1242342956 scopus 로고    scopus 로고
    • The RNA degradosome and poly(A) polymerase of Escherichia coli are required invivo for the degradation of smallmRNA decay intermediates containing REP-stabilizers
    • Khemici V., Carpousis A.J. The RNA degradosome and poly(A) polymerase of Escherichia coli are required invivo for the degradation of smallmRNA decay intermediates containing REP-stabilizers. Mol. Microbiol. 2004, 51:777-790.
    • (2004) Mol. Microbiol. , vol.51 , pp. 777-790
    • Khemici, V.1    Carpousis, A.J.2
  • 19
    • 33646568438 scopus 로고    scopus 로고
    • Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E.coli K-12 ORF archive): unique resources for biological research
    • Kitagawa M., Ara T., Arifuzzaman M., Ioka-Nakamichi T., Inamoto E., Toyonaga H., Mori H. Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E.coli K-12 ORF archive): unique resources for biological research. DNA Res. 2005, 12:291-299.
    • (2005) DNA Res. , vol.12 , pp. 291-299
    • Kitagawa, M.1    Ara, T.2    Arifuzzaman, M.3    Ioka-Nakamichi, T.4    Inamoto, E.5    Toyonaga, H.6    Mori, H.7
  • 20
    • 84899550455 scopus 로고    scopus 로고
    • Quantifying absolute protein synthesis rates reveals principles underlying allocation of cellular resources
    • Li G.W., Burkhardt D., Gross C., Weissman J.S. Quantifying absolute protein synthesis rates reveals principles underlying allocation of cellular resources. Cell 2014, 157:624-635.
    • (2014) Cell , vol.157 , pp. 624-635
    • Li, G.W.1    Burkhardt, D.2    Gross, C.3    Weissman, J.S.4
  • 21
    • 77956515947 scopus 로고    scopus 로고
    • A novel mechanism for ribonuclease regulation: transfer-messenger RNA (tmRNA) and its associated protein SmpB regulate the stability of RNase R
    • Liang W., Deutscher M.P. A novel mechanism for ribonuclease regulation: transfer-messenger RNA (tmRNA) and its associated protein SmpB regulate the stability of RNase R. J.Biol. Chem. 2010, 285:29054-29058.
    • (2010) J.Biol. Chem. , vol.285 , pp. 29054-29058
    • Liang, W.1    Deutscher, M.P.2
  • 22
    • 84866939617 scopus 로고    scopus 로고
    • Transfer-messenger RNA-SmpB protein regulates ribonuclease R turnover by promoting binding of HslUV and Lon proteases
    • Liang W., Deutscher M.P. Transfer-messenger RNA-SmpB protein regulates ribonuclease R turnover by promoting binding of HslUV and Lon proteases. J.Biol. Chem. 2012, 287:33472-33479.
    • (2012) J.Biol. Chem. , vol.287 , pp. 33472-33479
    • Liang, W.1    Deutscher, M.P.2
  • 23
    • 84055212205 scopus 로고    scopus 로고
    • Post-translational modification of RNase R is regulated by stress-dependent reduction in the acetylating enzyme Pka (YfiQ)
    • Liang W., Deutscher M.P. Post-translational modification of RNase R is regulated by stress-dependent reduction in the acetylating enzyme Pka (YfiQ). RNA 2012, 18:37-41.
    • (2012) RNA , vol.18 , pp. 37-41
    • Liang, W.1    Deutscher, M.P.2
  • 24
    • 84889016452 scopus 로고    scopus 로고
    • Ribosomes regulate the stability and action of the exoribonuclease RNase R
    • Liang W., Deutscher M.P. Ribosomes regulate the stability and action of the exoribonuclease RNase R. J.Biol. Chem. 2013, 288:34791-34798.
    • (2013) J.Biol. Chem. , vol.288 , pp. 34791-34798
    • Liang, W.1    Deutscher, M.P.2
  • 25
    • 61849152964 scopus 로고    scopus 로고
    • The Arabidopsis homologs of CCR4-associated factor 1 show mRNA deadenylation activity and play a role in plant defence responses
    • Liang W., Li C., Liu F., Jiang H., Li S., Sun J., Wu X., Li C. The Arabidopsis homologs of CCR4-associated factor 1 show mRNA deadenylation activity and play a role in plant defence responses. Cell Res. 2009, 19:307-316.
    • (2009) Cell Res. , vol.19 , pp. 307-316
    • Liang, W.1    Li, C.2    Liu, F.3    Jiang, H.4    Li, S.5    Sun, J.6    Wu, X.7    Li, C.8
  • 26
    • 80053595149 scopus 로고    scopus 로고
    • Acetylation regulates thestability of a bacterial protein: growth stage-dependent modification of RNase R
    • Liang W., Malhotra A., Deutscher M.P. Acetylation regulates thestability of a bacterial protein: growth stage-dependent modification of RNase R. Mol. Cell 2011, 44:160-166.
    • (2011) Mol. Cell , vol.44 , pp. 160-166
    • Liang, W.1    Malhotra, A.2    Deutscher, M.P.3
  • 27
    • 0027381917 scopus 로고
    • Mapping the 5' and 3' ends of Tetrahymena thermophila mRNAs using RNA ligase mediated amplification of cDNA ends (RLM-RACE)
    • Liu X., Gorovsky M.A. Mapping the 5' and 3' ends of Tetrahymena thermophila mRNAs using RNA ligase mediated amplification of cDNA ends (RLM-RACE). Nucleic Acids Res. 1993, 21:4954-4960.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 4954-4960
    • Liu, X.1    Gorovsky, M.A.2
  • 28
    • 0035947685 scopus 로고    scopus 로고
    • Expression analysis of the nrdHIEF operon from Escherichia coli. Conditions that trigger the transcript level invivo
    • Monje-Casas F., Jurado J., Prieto-Alamo M.J., Holmgren A., Pueyo C. Expression analysis of the nrdHIEF operon from Escherichia coli. Conditions that trigger the transcript level invivo. J.Biol. Chem. 2001, 276:18031-18037.
    • (2001) J.Biol. Chem. , vol.276 , pp. 18031-18037
    • Monje-Casas, F.1    Jurado, J.2    Prieto-Alamo, M.J.3    Holmgren, A.4    Pueyo, C.5
  • 29
    • 0037428226 scopus 로고    scopus 로고
    • The bacterial toxin RelE displays codon-specific cleavage of mRNAs in the ribosomal A site
    • Pedersen K., Zavialov A.V., Pavlov M.Y., Elf J., Gerdes K., Ehrenberg M. The bacterial toxin RelE displays codon-specific cleavage of mRNAs in the ribosomal A site. Cell 2003, 112:131-140.
    • (2003) Cell , vol.112 , pp. 131-140
    • Pedersen, K.1    Zavialov, A.V.2    Pavlov, M.Y.3    Elf, J.4    Gerdes, K.5    Ehrenberg, M.6
  • 30
    • 33751358590 scopus 로고    scopus 로고
    • RNase R degrades non-stop mRNAs selectively in an SmpB-tmRNA-dependent manner
    • Richards J., Mehta P., Karzai A.W. RNase R degrades non-stop mRNAs selectively in an SmpB-tmRNA-dependent manner. Mol. Microbiol. 2006, 62:1700-1712.
    • (2006) Mol. Microbiol. , vol.62 , pp. 1700-1712
    • Richards, J.1    Mehta, P.2    Karzai, A.W.3
  • 31
    • 0031696840 scopus 로고    scopus 로고
    • Linkage map of Escherichia coli K12, edition 10: the physical map
    • Rudd K.E. Linkage map of Escherichia coli K12, edition 10: the physical map. Microbiol. Mol. Biol. Rev. 1998, 62:985-1019.
    • (1998) Microbiol. Mol. Biol. Rev. , vol.62 , pp. 985-1019
    • Rudd, K.E.1
  • 32
  • 34
    • 0035283033 scopus 로고    scopus 로고
    • Exoribonuclease superfamilies: structural analysis and phylogenetic distribution
    • Zuo Y., Deutscher M.P. Exoribonuclease superfamilies: structural analysis and phylogenetic distribution. Nucleic Acids Res. 2001, 29:1017-1026.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 1017-1026
    • Zuo, Y.1    Deutscher, M.P.2


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