Linkage map of Escherichia coli K-12, edition 10: The physical map

Microbiology and Molecular Biology Reviews

Volumn 62, Issue 3, 1998, Pages 985-1019

  Rudd, Kenneth E ^a  

^a UNIVERSITY OF MIAMI MILLER SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL GENE; ESCHERICHIA COLI; GENE MAPPING; GENETIC LINKAGE; NONHUMAN; NUCLEOTIDE SEQUENCE; REVIEW; UNINDEXED SEQUENCE;

BACTERIA (MICROORGANISMS); ESCHERICHIA; ESCHERICHIA COLI; ESCHERICHIA COLI K12; NEGIBACTERIA; PROKARYOTA;

EID: 0031696840     PISSN: 10922172     EISSN: None     Source Type: Journal    
DOI: 10.1128/mmbr.62.3.985-1019.1998     Document Type: Review

References (22)

1. Aiba, H., T. Baba, K. Hayashi, T. Inada, K. Isono, T. Itoh, H. Kasai, K. Kashimoto, S. Kimura, M. Kitakawa, M. Kitagawa, K. Makino, T. Miki, K. Mizobuchi, H. Mori, T. Mori, K. Motomura, S. Nakade, Y. Nakamura, H. Nashimoto, Y. Nishio, T. Oshima, N. Saito, G. Sampei, Y. Seki, S. Sivasunddaram, H. Tagami, J. Takeda, K. Takemoto, Y. Takeuchi, C. Wada, Y. Yamamoto, and T. Horiuchi. 1996. A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map. DNA Res. 3:363-377.
2. Bachellier, S., E. Gilson, M. Hofnung, and C. W. Hill. 1996. Repeated sequences, p. 2012-2040. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. ASM Press, Washington, D.C.
3. Berlyn, M. B. 1998. Linkage map of Escherichia coli K-12, edition 10: the traditional map. Microbiol. Mol. Biol. Rev. 62:814-984.
4. Berlyn, M. B., K. B. Low, and K. E. Rudd. 1996. Integrated linkage map of Escherichia coli K-12, edition 9, p. 1715-1902. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. ASM Press, Washington, D.C.
5. Blattner, F. R., G. Plunkett, C. A. Bloch, N. T. Perna, V. Burland, M. Riley, J. Collado-Vides, J. D. Glasner, C. K. Rode, G. F. Mayhew, J. Gregor, N. W. Davis, H. A. Kirkpatrick, M. A. Goeden, D. J. Rose, B. Mau, and Y. Shao. 1997. The complete genome sequence of Escherichia coli K-12. Science 277:1453-1462.
6. Deonier, R. C. 1996. Native insertion sequence elements: locations, distributions, and sequence relationships, p. 2000-2011. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. ASM Press, Washington, D.C.
7. Gilson, E., J. P. Roussel, J. M. Clement, and M. Hofnung. 1986. A subfamily of E. coli palindromic units implicated in transcription termination? Ann. Inst. Pasteur Microbiol. 137B:259-270.
8. Gilson, E., W. Saurin, D. Perrin, S. Bachellier, and M. Hofnung. 1991. The BIME family of bacterial highly repetitive sequences. Res. Microbiol. 142: 217-222.
9. Itoh, T., H. Aiba, T. Baba, K. Hayashi, T. Inada, K. Isono, H. Kasai, S. Kimura, M. Kitakawa, M. Kitagawa, K. Makino, T. Miki, K. Mizobuchi, H. Mori, T. Mori, K. Motomura, S. Nakade, Y. Nakamura, H. Nashimoto, Y. Nishio, T. Oshima, N. Sato, G. Sampei, Y. Seki, S. Sivasunddaram, H. Tagami, J. Takeda, K. Takemoto, C. Wada, Y. Yamamoto, and T. Horiuchi. 1996. A 460-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 40.1-50.0 min region on the linkage map. DNA Res. 3:379-392.
10. Kohara, Y., K. Akiyama, and K. Isono. 1987. The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50:495-508.
11. Komine, Y., and H. Inokuchi. 1991. Precise mapping of the mpB gene encoding the RNA component of RNase P in Escherichia coli K-12. J. Bacteriol. 173:1813-1816.
12. Medigue, C., A. Viari, A. Henaut, and A. Danchin. 1993. Colibri: a functional data base for the Escherichia coli genome. Microbiol. Rev. 57:623-654.
13. Oshima, T., H. Aiba, T. Baba, K. Fujita, K. Hayashi, A. Honjo, K. Ikemoto, T. Inada, T. Itoh, M. Kajihara, K. Kanai, K. Kashimoto, S. Kimura, M. Kitagawa, K. Makino, S. Masuda, T. Miki, K. Mizobuchi, H. Mori, K. Motomura, Y. Nakamura, H. Nashimoto, Y. Nishio, N. Saito, G. Sampei, Y. Seki, H. Tagami, K. Takemoto, C. Wada, Y. Yamamoto, M. Yano, and T. Horiuchi. 1996. A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map. DNA Res. 3:137-155.
14. Rudd, K. E. 1992. Alignment of E. coli DNA sequences to a revised, integrated genomic restriction map, p. 2.3-2.4.3. In J. Miller (ed.). A short course in bacterial genetics: a laboratory manual and handbook for Escherichia coli and related bacteria. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
15. Rudd, K. E. 1993. Maps, genes, sequences, and computers: an Escherichia coli case study. ASM News 59:335-341.
16. Rudd, K. E., M. K. B. Berlyn, Y. Zuo, A. Danchin, I. Moszer, N. Hus, R. Mitchell, and A. Bairoch. Submitted for publication.
17. Rudd, K. E., W. Miller, J. Ostell, and D. A. Benson. 1990. Alignment of Escherichia coli K12 DNA sequences to a genomic restriction map. Nucleic Acids Res. 18:313-321.
18. Rudd, K. E., W. Miller, C. Werner, J. Ostell, C. Tolstoshev, and S. G. Satterfield. 1991. Mapping sequenced E. coli genes by computer: software, strategies and examples. Nucleic Acids Res. 19:637-647.
19. Schweizer, H. P., and P. Datta. 1990. Physical map location of the tdc operon of Escherichia coli. J. Bacteriol. 172:2825.
20. Stewart, A. 1995. Genetic nomenclature guide including information on genomic databases. Elsevier, New York, N.Y.
21. Umeda, M., and E. Ohtsubo. 1990. Mapping of insertion element IS5 in the Escherichia coli K-12 chromosome. Chromosomal rearrangements mediated by IS5. J. Mol. Biol. 213:229-237.
22. Yamamoto, Y., H. Aiba, T. Baba, K. Hayashi, T. Inada, K. Isono, T. Itoh, S. Kimura, M. Kitagawa, K. Makino, T. Miki, N. Mitsuhashi, K. Mizobuchi, H. Mori, S. Nakade, Y. Nakamura, H. Nashimoto, T. Oshima, S. Oyama, N. Saito, G. Sampei, Y. Satoh, S. Sivasundaram, H. Tagami, H. Takahashi, J. Takeda, K. Takemoto, K. Uehara, C. Wada, S. Yamagata, and T. Horiucbi. 1997. Construction of a contiguous 874-kb sequence of the Escherichia coli-K12 genome corresponding to 50.0-68.8 min on the linkage map and analysis of its sequence features. DNA Res. 4:91-113.