메뉴 건너뛰기




Volumn 26, Issue 4, 1997, Pages 767-777

In vivo cleavage of Escherichia coli BIME-2 repeats by DNA gyrase: Genetic characterization of the target and identification of the cut site

Author keywords

[No Author keywords available]

Indexed keywords

DNA TOPOISOMERASE (ATP HYDROLYSING); INTEGRATION HOST FACTOR;

EID: 0030698083     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2958.1997.6121983.x     Document Type: Article
Times cited : (46)

References (37)
  • 1
    • 0028278158 scopus 로고
    • Structural and functional diversity among bacterial interspersed mosaic elements (BIMEs)
    • Bachellier, S., Saurin, W., Perrin, D., Hofnung, M., and Gilson, E. (1994) Structural and functional diversity among bacterial interspersed mosaic elements (BIMEs). Mol Microbiol 12: 61-70.
    • (1994) Mol Microbiol , vol.12 , pp. 61-70
    • Bachellier, S.1    Saurin, W.2    Perrin, D.3    Hofnung, M.4    Gilson, E.5
  • 2
    • 0000117110 scopus 로고    scopus 로고
    • Repeated sequences
    • Neidhardt, F.C., Curtis III, R., Ingraham, J.L., Lin, E.C.C., Brooks Low, K., Magasanik, B., Reznikoff, W.S., Riley, M., Schaechter, M., and Umbarger, H.E. (eds). Washington DC: American Society for Microbiology Press
    • Bachellier, S., Gilson, E., Hofnung, M., and Hill, C.W. (1996) Repeated sequences. In Escherichia coli and Salmonella typhimurium. Neidhardt, F.C., Curtis III, R., Ingraham, J.L., Lin, E.C.C., Brooks Low, K., Magasanik, B., Reznikoff, W.S., Riley, M., Schaechter, M., and Umbarger, H.E. (eds). Washington DC: American Society for Microbiology Press, pp. 2013-2040.
    • (1996) Escherichia Coli and Salmonella Typhimurium , pp. 2013-2040
    • Bachellier, S.1    Gilson, E.2    Hofnung, M.3    Hill, C.W.4
  • 3
    • 0021671752 scopus 로고
    • The spacing of Escherichia coli DNA gyrase sites cleaved in vivo by treatment with oxolinic acid and sodium dodecyl sulfate
    • Béjar, S., and Bouché, J.P. (1984) The spacing of Escherichia coli DNA gyrase sites cleaved in vivo by treatment with oxolinic acid and sodium dodecyl sulfate. Biochimie 66: 693-700.
    • (1984) Biochimie , vol.66 , pp. 693-700
    • Béjar, S.1    Bouché, J.P.2
  • 4
    • 0027441932 scopus 로고
    • Specific interaction of IHF with RIBs, a class of bacterial repetitive DNA elements located at the 3′-end of transcription units
    • Boccard, F., and Prentki, P. (1993) Specific interaction of IHF with RIBs, a class of bacterial repetitive DNA elements located at the 3′-end of transcription units. EMBO J 12: 5019-5027.
    • (1993) EMBO J , vol.12 , pp. 5019-5027
    • Boccard, F.1    Prentki, P.2
  • 5
    • 0025633561 scopus 로고
    • Transcription regulates oxolinic acid-induced DNA gyrase cleavage at specific sites on the E. coli chromosome
    • Condemine, G., and Smith, C.L. (1990) Transcription regulates oxolinic acid-induced DNA gyrase cleavage at specific sites on the E. coli chromosome. Nucleic Acids Res 18: 7389-7396.
    • (1990) Nucleic Acids Res , vol.18 , pp. 7389-7396
    • Condemine, G.1    Smith, C.L.2
  • 6
    • 0029642089 scopus 로고
    • In vivo interaction of the Escherichia coli integration host factor with its specific binding sites
    • Engelhorn, M., Boccard, F., Murtin, C., Prentki, P., and Geiselmann, J. (1995) In vivo interaction of the Escherichia coli integration host factor with its specific binding sites. Nucleic Acids Res 23: 2959-2965.
    • (1995) Nucleic Acids Res , vol.23 , pp. 2959-2965
    • Engelhorn, M.1    Boccard, F.2    Murtin, C.3    Prentki, P.4    Geiselmann, J.5
  • 7
    • 0024253624 scopus 로고
    • Transcription induces gyration of the DNA template in Escherichia coli
    • Figueroa, N., and Bossi, L. (1988) Transcription induces gyration of the DNA template in Escherichia coli. Proc Natl Acad Sci USA 85: 9416-9420.
    • (1988) Proc Natl Acad Sci USA , vol.85 , pp. 9416-9420
    • Figueroa, N.1    Bossi, L.2
  • 8
    • 0022729123 scopus 로고
    • DNA gyrase complex with DNA: Determinants for site-specific DNA breakage
    • Fisher, L.M., Barot, H.A., and Cullen, M.E. (1986) DNA gyrase complex with DNA: determinants for site-specific DNA breakage. EMBO J 5: 1411-1418.
    • (1986) EMBO J , vol.5 , pp. 1411-1418
    • Fisher, L.M.1    Barot, H.A.2    Cullen, M.E.3
  • 9
    • 0024278509 scopus 로고
    • DNA gyrase on the bacterial chromosome. Oxolinic acid-induced DNA cleavage in the dnaA-gyrB region
    • Franco, R.J., and Drlica, K. (1988) DNA gyrase on the bacterial chromosome. Oxolinic acid-induced DNA cleavage in the dnaA-gyrB region. J Mol Biol 201: 229-233.
    • (1988) J Mol Biol , vol.201 , pp. 229-233
    • Franco, R.J.1    Drlica, K.2
  • 10
    • 0024291348 scopus 로고
    • Integration Host Factor: A protein for all reasons
    • Friedman, D.I. (1988) Integration Host Factor: a protein for all reasons. Cell 55: 545-554.
    • (1988) Cell , vol.55 , pp. 545-554
    • Friedman, D.I.1
  • 11
    • 0022618799 scopus 로고
    • Replication of pSC101: Effects of mutations in the E. coli DNA binding protein IHF
    • Gamas, P., Burger, A.C., Churchward, G., Caro, L., Galas, D., and Chandler, M. (1986) Replication of pSC101: effects of mutations in the E. coli DNA binding protein IHF. Mol Gen Genet 204: 85-89.
    • (1986) Mol Gen Genet , vol.204 , pp. 85-89
    • Gamas, P.1    Burger, A.C.2    Churchward, G.3    Caro, L.4    Galas, D.5    Chandler, M.6
  • 12
    • 0001373485 scopus 로고
    • Nalidixic acid resistance: A second genetic character involved in DNA gyrase activity
    • Gellert, M., Mizuuchi, K., O'Dea, M.H., Itoh, T., and Tomizawa, J.-I. (1977) Nalidixic acid resistance: a second genetic character involved in DNA gyrase activity. Proc Natl Acad Sci USA 74: 4772-4776.
    • (1977) Proc Natl Acad Sci USA , vol.74 , pp. 4772-4776
    • Gellert, M.1    Mizuuchi, K.2    O'Dea, M.H.3    Itoh, T.4    Tomizawa, J.-I.5
  • 13
    • 0025303243 scopus 로고
    • DNA polymerase I and a protein complex bind specifically to E. coli palindromic unit highly repetitive DNA: Implications for bacterial chromosome organization
    • Gilson, E., Perrin, D., and Hofnung, M. (1990) DNA polymerase I and a protein complex bind specifically to E. coli palindromic unit highly repetitive DNA: implications for bacterial chromosome organization. Nucleic Acids Res 18: 3941-3952.
    • (1990) Nucleic Acids Res , vol.18 , pp. 3941-3952
    • Gilson, E.1    Perrin, D.2    Hofnung, M.3
  • 14
    • 0025728069 scopus 로고
    • Palindromic units are part of a new bacterial interspersed mosaic element (BIME)
    • Gilson, E., Saurin, W., Perrin, D., Bachellier, S., and Hofnung, M. (1991) Palindromic units are part of a new bacterial interspersed mosaic element (BIME). Nucleic Acids Res 19: 1375-1383.
    • (1991) Nucleic Acids Res , vol.19 , pp. 1375-1383
    • Gilson, E.1    Saurin, W.2    Perrin, D.3    Bachellier, S.4    Hofnung, M.5
  • 16
    • 0022361531 scopus 로고
    • Sites of reaction of Escherichia coli DNA gyrase on pBR322 in vivo as revealed by oxolinic acid-induced plasmid linearization
    • Lockshon, D., and Morris, D.R. (1985) Sites of reaction of Escherichia coli DNA gyrase on pBR322 in vivo as revealed by oxolinic acid-induced plasmid linearization. J Mol Biol 181: 63-74.
    • (1985) J Mol Biol , vol.181 , pp. 63-74
    • Lockshon, D.1    Morris, D.R.2
  • 17
    • 0023433855 scopus 로고
    • Supercoiling of the DNA template during transcription
    • Liu, L.F., and Wang, J.C. (1987) Supercoiling of the DNA template during transcription. Proc Natl Acad Sci USA 84: 7024-7027.
    • (1987) Proc Natl Acad Sci USA , vol.84 , pp. 7024-7027
    • Liu, L.F.1    Wang, J.C.2
  • 18
    • 0025740223 scopus 로고
    • mRNA degradation by processive 3′-5′ exoribonucleases in vitro and the implications for prokaryotic mRNA decay in vivo
    • McLaren, R.S., Newbury, S.F., Dance, G.S.C., Causton, H.C., and Higgins, C.F. (1991) mRNA degradation by processive 3′-5′ exoribonucleases in vitro and the implications for prokaryotic mRNA decay in vivo. J Mol Biol 221: 81-95.
    • (1991) J Mol Biol , vol.221 , pp. 81-95
    • McLaren, R.S.1    Newbury, S.F.2    Dance, G.S.C.3    Causton, H.C.4    Higgins, C.F.5
  • 19
    • 0025008740 scopus 로고
    • The DNA gyrase of Escherichia coli participates in the formation of a spontaneous deletion by recA-independent recombination in vivo
    • Miura-Masuda, A., and Ikeda, H. (1990) The DNA gyrase of Escherichia coli participates in the formation of a spontaneous deletion by recA-independent recombination in vivo. Mol Gen Genet 220: 345-352.
    • (1990) Mol Gen Genet , vol.220 , pp. 345-352
    • Miura-Masuda, A.1    Ikeda, H.2
  • 20
    • 0018422012 scopus 로고
    • Site-specific cleavage of DNA by E. coli DNA gyrase
    • Morrison, A., and Cozzarelli, N.R. (1979) Site-specific cleavage of DNA by E. coli DNA gyrase. Cell 17: 175-184.
    • (1979) Cell , vol.17 , pp. 175-184
    • Morrison, A.1    Cozzarelli, N.R.2
  • 21
    • 0019542484 scopus 로고
    • Contacts between DNA gyrase and its binding site on DNA: Features of symmetry and asymmetry revealed by protection from nucleases
    • Morrison, A., and Cozzarelli, N.R. (1981) Contacts between DNA gyrase and its binding site on DNA: Features of symmetry and asymmetry revealed by protection from nucleases. Proc Natl Acad Sci USA 78: 7024-7027.
    • (1981) Proc Natl Acad Sci USA , vol.78 , pp. 7024-7027
    • Morrison, A.1    Cozzarelli, N.R.2
  • 22
    • 0023667782 scopus 로고
    • Stabilization of translationally active mRNA by prokaryotic REP sequences
    • Newbury, S.F., Smith, N.H., Robinson, E.G., Hiles, I.D., and Higgins, C.F. (1987) Stabilization of translationally active mRNA by prokaryotic REP sequences. Cell 48: 297-310.
    • (1987) Cell , vol.48 , pp. 297-310
    • Newbury, S.F.1    Smith, N.H.2    Robinson, E.G.3    Hiles, I.D.4    Higgins, C.F.5
  • 23
    • 0027426254 scopus 로고
    • Integration host factor binds to a unique class of complex repetitive extragenic DNA sequences in Escherichia coli
    • Oppenheim, A.B., Rudd, K.E., Mendelsoon, I., and Teff, D. (1993) Integration host factor binds to a unique class of complex repetitive extragenic DNA sequences in Escherichia coli. Mol Microbiol 10: 113-122.
    • (1993) Mol Microbiol , vol.10 , pp. 113-122
    • Oppenheim, A.B.1    Rudd, K.E.2    Mendelsoon, I.3    Teff, D.4
  • 24
    • 0025517653 scopus 로고
    • A DNA gyrase-binding site at the center of bacteriophage Mu genome is required for efficient replicative transposition
    • Pato, M.L., Howe, M.M., and Higgins, N.P. (1990) A DNA gyrase-binding site at the center of bacteriophage Mu genome is required for efficient replicative transposition. Proc Natl Acad Sci USA 87: 8716-8720.
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 8716-8720
    • Pato, M.L.1    Howe, M.M.2    Higgins, N.P.3
  • 25
    • 0028842853 scopus 로고
    • Characterization of Mu prophage lacking the central strong gyrase binding site: Localization of the block in replication
    • Pato, M.L, Karlok, M., Wall, C., and Higgins, N.P. (1995) Characterization of Mu prophage lacking the central strong gyrase binding site: localization of the block in replication. J Bacteriol 177: 5937-5942.
    • (1995) J Bacteriol , vol.177 , pp. 5937-5942
    • Pato, M.L.1    Karlok, M.2    Wall, C.3    Higgins, N.P.4
  • 26
    • 0029922992 scopus 로고    scopus 로고
    • A DEAD-box RNA helicase in the Escherichia coli RNA degradosome
    • Py, B., Higgins, C.F., Krisch, H.M., and Carpousis, A.J. (1996) A DEAD-box RNA helicase in the Escherichia coli RNA degradosome. Nature 381: 169-172.
    • (1996) Nature , vol.381 , pp. 169-172
    • Py, B.1    Higgins, C.F.2    Krisch, H.M.3    Carpousis, A.J.4
  • 27
    • 0026502006 scopus 로고
    • Direct evidence for the effect of transcription on local DNA supercoiling in vivo
    • Rahmouni, A.R., and Wells, R.D. (1992) Direct evidence for the effect of transcription on local DNA supercoiling in vivo. J Mol Biol 223: 131-144.
    • (1992) J Mol Biol , vol.223 , pp. 131-144
    • Rahmouni, A.R.1    Wells, R.D.2
  • 31
    • 0025020281 scopus 로고
    • Tandem chromosomal duplications: Role of REP sequences in the recombination event at the join-point
    • Shyamala, V., Schneider, E., and Ames, G.F. (1990) Tandem chromosomal duplications: role of REP sequences in the recombination event at the join-point. EMBO J 9: 939-946.
    • (1990) EMBO J , vol.9 , pp. 939-946
    • Shyamala, V.1    Schneider, E.2    Ames, G.F.3
  • 32
    • 0018384079 scopus 로고
    • DNA gyrase on the bacterial chromosome: DNA cleavage induced by oxolinic acid
    • Snyder, M., and Drlica, K. (1979) DNA gyrase on the bacterial chromosome: DNA cleavage induced by oxolinic acid. J Mol Biol 131: 287-302.
    • (1979) J Mol Biol , vol.131 , pp. 287-302
    • Snyder, M.1    Drlica, K.2
  • 33
    • 0001534829 scopus 로고
    • Mechanism of action of Nalidixic acid: Purification of Escherichia coli nalA gene product and its relationship to DNA gyrase and a novel nicking-closing enzyme
    • Sugino, A., Peebles, C.L., Kreuzer, K.N., and Cozzarelli, N.R. (1977) Mechanism of action of Nalidixic acid: purification of Escherichia coli nalA gene product and its relationship to DNA gyrase and a novel nicking-closing enzyme. Proc Natl Acad Sci USA 74: 4767-4771.
    • (1977) Proc Natl Acad Sci USA , vol.74 , pp. 4767-4771
    • Sugino, A.1    Peebles, C.L.2    Kreuzer, K.N.3    Cozzarelli, N.R.4
  • 34
    • 0024022068 scopus 로고
    • The partition locus of plasmid pSC101 is a specific binding site for DNA gyrase
    • Wahle, E., and Kornberg, A. (1988) The partition locus of plasmid pSC101 is a specific binding site for DNA gyrase. EMBO J 7: 1889-1895.
    • (1988) EMBO J , vol.7 , pp. 1889-1895
    • Wahle, E.1    Kornberg, A.2
  • 35
    • 0004754609 scopus 로고
    • DNA gyrase binds to the family of prokaryotic repetitive extragenic palindromic sequences
    • Yang, Y., and Ames, G.F.-L. (1988) DNA gyrase binds to the family of prokaryotic repetitive extragenic palindromic sequences. Proc Natl Acad Sci USA 85: 8850-8854.
    • (1988) Proc Natl Acad Sci USA , vol.85 , pp. 8850-8854
    • Yang, Y.1    Ames, G.F.-L.2
  • 36
    • 0002023387 scopus 로고
    • The family of repetitive extragenic palindromic sequences: Interaction with DNA gyrase and histone-like protein HU
    • Drlica, K., and Riley, M. (eds). Washington, DC, American Society for Microbiology
    • Yang, Y., and Ames, G.F.-L. (1990) The family of repetitive extragenic palindromic sequences: interaction with DNA gyrase and histone-like protein HU. In The Bacterial Chromosome. Drlica, K., and Riley, M. (eds). Washington, DC, American Society for Microbiology, pp. 211-225.
    • (1990) The Bacterial Chromosome , pp. 211-225
    • Yang, Y.1    Ames, G.F.-L.2
  • 37
    • 0028858007 scopus 로고
    • Roles of topoisomerase IV and DNA gyrase in DNA unlinking during replication in Escherichia coli
    • Zechiedrich, E.L., and Cozzarelli, N.R. (1995) Roles of topoisomerase IV and DNA gyrase in DNA unlinking during replication in Escherichia coli. Genes Dev 9: 2859: 2869.
    • (1995) Genes Dev , vol.9 , pp. 2859
    • Zechiedrich, E.L.1    Cozzarelli, N.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.