Emerging views on tmRNA-mediated protein tagging and ribosome rescue

Molecular Microbiology

Volumn 42, Issue 4, 2001, Pages 879-885

  Gillet, Reynald ^a   Felden, Brice ^a,b  

^a IFR 97   (France)

^b UNIVERSITÉ DE RENNES 1   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ALANINE; ALANINE TRANSFER RNA LIGASE; BACTERIAL PROTEIN; LIGAND; MESSENGER RNA; POLYPEPTIDE; PROTEINASE; RIBOSOME RNA; TRANSFER RNA; TRANSLATION TERMINATION FACTOR;

AMINO ACID SEQUENCE; CONTROLLED STUDY; CYANOBACTERIUM; CYTOPLASM; EUBACTERIUM; GENETIC CODE; IN VITRO STUDY; IN VIVO STUDY; NONHUMAN; OPEN READING FRAME; PATHOGENESIS; PHYLOGENY; PRIORITY JOURNAL; PROTEIN DEGRADATION; PROTEIN SYNTHESIS; RIBOSOME; RNA TRANSLATION; SHORT SURVEY; STOP CODON; STRESS;

BACTERIAL PHYSIOLOGY; BACTERIAL PROTEINS; PHYLOGENY; PROTEIN BIOSYNTHESIS; RIBOSOMES; RNA, BACTERIAL;

ACTINOBACTERIA (CLASS); BACTERIA (MICROORGANISMS); NEGIBACTERIA; UNCULTURED ACTINOMYCETE;

EID: 0035171382     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2958.2001.02701.x     Document Type: Short Survey

References (43)

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2. 10Sa RNA complements the temperature-sensitive phenotype caused by a mutation in the phosphoribosyl pyrophosphate synthetase (prs) gene in Escherichia coli
3. Kinetic parameters for tmRNA binding to alanyl-tRNA synthetase and elongation factor Tu from Escherichia coli
4. Probing the structure of the Escherichia coli 10Sa RNA (tmRNA)
5. Presence and location of modified nucleotides in Escherichia coli tmRNA: Structural mimicry with tRNA acceptor branches
6. Eubacterial tmRNAs: Everywhere except the alpha-Proteo-bacteria?
7. Phylogenetic analysis of tmRNA and genes within a bacterial subgroup reveals a specific structural signature
8. Recoding: Dynamic reprogramming of translation
9. Ala recognizes transfer-messenger RNA with specificity: A functional complex prior to entering the ribosome?
10. Charged tmRNA but not tmRNA-mediated proteolysis is essential for Neisseria gonorrhoeae viability
11. Global transposon mutagenesis and a minimal Mycoplasma genome
12. Quality control mechanisms during translation
13. ssrA (tmRNA) plays a role in Salmonella enterica Serovar Typhimurium pathogenesis
14. Protein factors associated with the SsrA-SmpB tagging and ribosome rescue complex
15. SmpB, a unique RNA-binding protein essential for the peptide-tagging activity of SsrA (tmRNA)
16. The SsrA-SmpB system for protein tagging, directed degradation and ribosome rescue
17. Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA
18. tmRNAs that encode proteolysis-inducing tags are found in all known bacterial genomes: A two-piece tmRNA functions in Caulobacter
19. A tRNA-like structure is present in 10Sa RNA, a small stable RNA from Escherichia coli
20. Small stable RNAs from Escherichia coli: Evidence for the existence of new molecules and for a new ribonucleoprotein particle containing 6S RNA
21. Determinants on tmRNA for initiating efficient and precise trans-translation: Some mutations upstream of the tag-encoding sequence of Escherichia coli tmRNA shift the initiation point of trans-translation in vitro
22. RNase E is required for the maturation of ssrA RNA and normal ssrA RNA peptide-tagging activity
23. Requirement of transfer-messenger RNA for the growth of Bacillus subtilis under stresses
24. Functional and structural analysis of a pseudoknot upstream of the tag-encoded sequence in E. coli tmRNA
25. Three of four pseudoknots in tmRNA are interchangeable and are substitutable with single-stranded RNAs
26. Synthesis of staphylococcal virulence factors is controlled by a regulatory RNA molecule
27. 10Sa RNA. A small stable RNA of Escherichia coli, is functional
28. Atomic structures at last: The ribosome in 2000
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31. Identification of endogenous SsrA-tagged proteins reveals tagging at positions corresponding to stop codons
32. Aminoacylated tmRNA from Escherichia coli interacts with prokaryotic elongation factor Tu
33. Characterization of the RNA processing enzyme RNase III from wild type and overexpressing Escherichia coli cells in processing natural RNA substrates
34. Structural studies of the tRNA domain of tmRNA
35. Ribosome-messenger recognition in the absence of the Shine-Dalgarno interactions
36. tRNA-like structures in 10Sa RNAs of Mycoplasma capricolum and Bacillus subtilis
37. Identification of novel small RNAs using comparative genomics and microarrays
38. Identification of 10Sa RNA (tmRNA) homologues from the cyanobacterium Synechococcus sp. Strain PCC6301 and related organisms
39. The tmRNA website
40. Phylogenetic analysis of tmRNA secondary structure
41. Resuming translation on tmRNA: A unique mode of determining a reading frame
42. Binding and cross-linking of tmRNA to ribosomal protein S1, on and off the Escherichia coli ribosome
43. Crystal structure of the ribosome at 5.5 Å resolution