-
1
-
-
84881173034
-
The maternal to zygotic transition in mammals
-
Li L, Lu X, Dean J. The maternal to zygotic transition in mammals. Mol Aspects Med 2013; 34:919-938.
-
(2013)
Mol Aspects Med
, vol.34
, pp. 919-938
-
-
Li, L.1
Lu, X.2
Dean, J.3
-
2
-
-
84861514065
-
The sperm epigenome and potential implications for the developing embryo
-
Jenkins TG, Carrell DT. The sperm epigenome and potential implications for the developing embryo. Reproduction 2012; 143:727-734.
-
(2012)
Reproduction
, vol.143
, pp. 727-734
-
-
Jenkins, T.G.1
Carrell, D.T.2
-
3
-
-
70349673839
-
Active demethylation of paternal genome in mammalian zygotes
-
Abdalla H, Yoshizawa Y, Hochi S. Active demethylation of paternal genome in mammalian zygotes. J Reprod Dev 2009; 55:356-360.
-
(2009)
J Reprod Dev
, vol.55
, pp. 356-360
-
-
Abdalla, H.1
Yoshizawa, Y.2
Hochi, S.3
-
5
-
-
79955004702
-
Advances in DNA methylation: 5-hydroxymethylcytosine revisited
-
Dahl C, Gronbaek K, Guldberg P. Advances in DNA methylation: 5-hydroxymethylcytosine revisited. Clin Chim Acta 2011; 412:831-836.
-
(2011)
Clin Chim Acta
, vol.412
, pp. 831-836
-
-
Dahl, C.1
Gronbaek, K.2
Guldberg, P.3
-
6
-
-
66149123748
-
The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain
-
Kriaucionis S, Heintz N. The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain. Science 2009; 324:929-930.
-
(2009)
Science
, vol.324
, pp. 929-930
-
-
Kriaucionis, S.1
Heintz, N.2
-
7
-
-
66149146320
-
Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1
-
Tahiliani M, Koh KP, Shen Y, Pastor WA, Bandukwala H, Brudno Y, Agarwal S, Iyer LM, Liu DR, Aravind L, Rao A. Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1. Science 2009; 324:930-935.
-
(2009)
Science
, vol.324
, pp. 930-935
-
-
Tahiliani, M.1
Koh, K.P.2
Shen, Y.3
Pastor, W.A.4
Bandukwala, H.5
Brudno, Y.6
Agarwal, S.7
Iyer, L.M.8
Liu, D.R.9
Aravind, L.10
Rao, A.11
-
8
-
-
78650826181
-
Tissue distribution of 5-hydroxymethylcytosine and search for active demethylation intermediates
-
Globisch D, Munzel M, Muller M, Michalakis S, Wagner M, Koch S, Bruckl T, Biel M, Carell T. Tissue distribution of 5-hydroxymethylcytosine and search for active demethylation intermediates. PLoS One 2010; 5: e15367.
-
(2010)
PLoS One
, vol.5
-
-
Globisch, D.1
Munzel, M.2
Muller, M.3
Michalakis, S.4
Wagner, M.5
Koch, S.6
Bruckl, T.7
Biel, M.8
Carell, T.9
-
9
-
-
84856158823
-
The curious chemical biology of cytosine: deamination, methylation, and oxidation as modulators of genomic potential
-
Nabel CS, Manning SA, Kohli RM. The curious chemical biology of cytosine: deamination, methylation, and oxidation as modulators of genomic potential. ACS Chem Biol 2012; 7:20-30.
-
(2012)
ACS Chem Biol
, vol.7
, pp. 20-30
-
-
Nabel, C.S.1
Manning, S.A.2
Kohli, R.M.3
-
10
-
-
84902831568
-
Tet oxidizes thymine to 5-hydroxymethyluracil in mouse embryonic stem cell DNA
-
Pfaffeneder T, Spada F, Wagner M, Brandmayr C, Laube SK, Eisen D, Truss M, Steinbacher J, Hackner B, Kotljarova O, Schuermann D, Michalakis S, et al. Tet oxidizes thymine to 5-hydroxymethyluracil in mouse embryonic stem cell DNA. Nat Chem Biol 2014; 10:574-581.
-
(2014)
Nat Chem Biol
, vol.10
, pp. 574-581
-
-
Pfaffeneder, T.1
Spada, F.2
Wagner, M.3
Brandmayr, C.4
Laube, S.K.5
Eisen, D.6
Truss, M.7
Steinbacher, J.8
Hackner, B.9
Kotljarova, O.10
Schuermann, D.11
Michalakis, S.12
-
11
-
-
3042854695
-
Epigenetic reprogramming during early development in mammals
-
Santos F, Dean W. Epigenetic reprogramming during early development in mammals. Reproduction 2004; 127:643-651.
-
(2004)
Reproduction
, vol.127
, pp. 643-651
-
-
Santos, F.1
Dean, W.2
-
12
-
-
0036145567
-
Dynamic reprogramming of DNA methylation in the early mouse embryo
-
Santos F, Hendrich B, Reik W, Dean W. Dynamic reprogramming of DNA methylation in the early mouse embryo. Dev Biol 2002; 241:172-182.
-
(2002)
Dev Biol
, vol.241
, pp. 172-182
-
-
Santos, F.1
Hendrich, B.2
Reik, W.3
Dean, W.4
-
13
-
-
84880048186
-
Comparison of oxidative stress/DNA damage in semen and blood of fertile and infertile men
-
Guz J, Gackowski D, Foksinski M, Rozalski R, Zarakowska E, Siomek A, Szpila A, Kotzbach M, Kotzbach R, Olinski R. Comparison of oxidative stress/DNA damage in semen and blood of fertile and infertile men. PLoS One 2013; 8:e68490.
-
(2013)
PLoS One
, vol.8
-
-
Guz, J.1
Gackowski, D.2
Foksinski, M.3
Rozalski, R.4
Zarakowska, E.5
Siomek, A.6
Szpila, A.7
Kotzbach, M.8
Kotzbach, R.9
Olinski, R.10
-
14
-
-
0035808970
-
Facile methods for the synthesis of 5-formylcytidine
-
Rahman AAHA, Wada T, Saigo K. Facile methods for the synthesis of 5-formylcytidine. Tetrahedron Lett 2001; 42:1061-1063.
-
(2001)
Tetrahedron Lett
, vol.42
, pp. 1061-1063
-
-
Rahman, A.A.H.A.1
Wada, T.2
Saigo, K.3
-
15
-
-
84884906522
-
Paternal aging and associated intraindividual alterations of global sperm 5-methylcytosine and 5-hydroxymethylcytosine levels
-
Jenkins TG, Aston KI, Cairns BR, Carrell DT. Paternal aging and associated intraindividual alterations of global sperm 5-methylcytosine and 5-hydroxymethylcytosine levels. Fertil Steril 2013; 100:945-951.
-
(2013)
Fertil Steril
, vol.100
, pp. 945-951
-
-
Jenkins, T.G.1
Aston, K.I.2
Cairns, B.R.3
Carrell, D.T.4
-
16
-
-
84899128858
-
Sperm nuclear proteome and its epigenetic potential
-
Castillo J, Amaral A, Oliva R. Sperm nuclear proteome and its epigenetic potential. Andrology 2014; 2:326-338.
-
(2014)
Andrology
, vol.2
, pp. 326-338
-
-
Castillo, J.1
Amaral, A.2
Oliva, R.3
-
17
-
-
0020489781
-
Amount and distribution of 5-methylcytosine in human DNA from different types of tissues of cells
-
Ehrlich M, Gama-Sosa MA, Huang LH, Midgett RM, Kuo KC, McCune RA, Gehrke C. Amount and distribution of 5-methylcytosine in human DNA from different types of tissues of cells. Nucleic Acids Res 1982; 10:2709-2721.
-
(1982)
Nucleic Acids Res
, vol.10
, pp. 2709-2721
-
-
Ehrlich, M.1
Gama-Sosa, M.A.2
Huang, L.H.3
Midgett, R.M.4
Kuo, K.C.5
McCune, R.A.6
Gehrke, C.7
-
18
-
-
33846066292
-
A unique configuration of genome-wide DNA methylation patterns in the testis
-
Oakes CC, La SS, Smiraglia DJ, Robaire B, Trasler JM. A unique configuration of genome-wide DNA methylation patterns in the testis. Proc Natl Acad Sci U S A 2007; 104:228-233.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 228-233
-
-
Oakes, C.C.1
La, S.S.2
Smiraglia, D.J.3
Robaire, B.4
Trasler, J.M.5
-
19
-
-
84455167621
-
Mbd3/NURD complex regulates expression of 5-hydroxymethylcytosine marked genes in embryonic stem cells
-
Yildirim O, Li R, Hung JH, Chen PB, Dong X, Ee LS, Weng Z, Rando OJ, Fazzio TG. Mbd3/NURD complex regulates expression of 5-hydroxymethylcytosine marked genes in embryonic stem cells. Cell 2011; 147:1498-1510.
-
(2011)
Cell
, vol.147
, pp. 1498-1510
-
-
Yildirim, O.1
Li, R.2
Hung, J.H.3
Chen, P.B.4
Dong, X.5
Ee, L.S.6
Weng, Z.7
Rando, O.J.8
Fazzio, T.G.9
-
20
-
-
84884590688
-
Potential functional roles of DNA demethylation intermediates
-
Song CX, He C. Potential functional roles of DNA demethylation intermediates. Trends Biochem Sci 2013; 38:480-484.
-
(2013)
Trends Biochem Sci
, vol.38
, pp. 480-484
-
-
Song, C.X.1
He, C.2
-
21
-
-
84857891830
-
Tissue type is a major modifier of the 5-hydroxymethylcytosine content of human genes
-
Nestor CE, Ottaviano R, Reddington J, Sproul D, Reinhardt D, Dunican D, Katz E, Dixon JM, Harrison DJ, Meehan RR. Tissue type is a major modifier of the 5-hydroxymethylcytosine content of human genes. Genome Res 2012; 22:467-477.
-
(2012)
Genome Res
, vol.22
, pp. 467-477
-
-
Nestor, C.E.1
Ottaviano, R.2
Reddington, J.3
Sproul, D.4
Reinhardt, D.5
Dunican, D.6
Katz, E.7
Dixon, J.M.8
Harrison, D.J.9
Meehan, R.R.10
-
22
-
-
84879672635
-
Dynamics of 5-hydroxymethylcytosine during mouse spermatogenesis
-
Gan H, Wen L, Liao S, Lin X, Ma T, Liu J, Song CX, Wang M, He C, Han C, Tang F. Dynamics of 5-hydroxymethylcytosine during mouse spermatogenesis. Nat Commun 2013; 4:1995.
-
(2013)
Nat Commun
, vol.4
, pp. 1995
-
-
Gan, H.1
Wen, L.2
Liao, S.3
Lin, X.4
Ma, T.5
Liu, J.6
Song, C.X.7
Wang, M.8
He, C.9
Han, C.10
Tang, F.11
-
23
-
-
0033792418
-
High-performance liquid chromatography-tandem mass spectrometry measurement of radiation-induced base damage to isolated and cellular DNA
-
Frelon S, Douki T, Ravanat JL, Pouget JP, Tornabene C, Cadet J. High-performance liquid chromatography-tandem mass spectrometry measurement of radiation-induced base damage to isolated and cellular DNA. Chem Res Toxicol 2000; 13:1002-1010.
-
(2000)
Chem Res Toxicol
, vol.13
, pp. 1002-1010
-
-
Frelon, S.1
Douki, T.2
Ravanat, J.L.3
Pouget, J.P.4
Tornabene, C.5
Cadet, J.6
-
24
-
-
0025737777
-
Site directed substitution of 5-hydroxymethyluracil for thymine in replicating phi X-174am3 DNA via synthesis of 5-hydroxymethyl-20-deoxyuridine-50-triphosphate
-
Levy DD, Teebor GW. Site directed substitution of 5-hydroxymethyluracil for thymine in replicating phi X-174am3 DNA via synthesis of 5-hydroxymethyl-20-deoxyuridine-50-triphosphate. Nucleic Acids Res 1991; 19:3337-3343.
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 3337-3343
-
-
Levy, D.D.1
Teebor, G.W.2
-
25
-
-
0027257707
-
Structures of base pairs with 5-(hydroxymethyl)-20-deoxyuridine in DNA determined by NMR spectroscopy
-
Mellac S, Fazakerley GV, Sowers LC. Structures of base pairs with 5-(hydroxymethyl)-20-deoxyuridine in DNA determined by NMR spectroscopy. Biochemistry 1993; 32:7779-7786.
-
(1993)
Biochemistry
, vol.32
, pp. 7779-7786
-
-
Mellac, S.1
Fazakerley, G.V.2
Sowers, L.C.3
-
26
-
-
0001147412
-
The new occurrence of a new pyrimidine base replacing thymine in a bacteriophage DNA:5-hydroxymethyl uracil
-
Kallen RG, Simon M, Marmur J. The new occurrence of a new pyrimidine base replacing thymine in a bacteriophage DNA:5-hydroxymethyl uracil. J Mol Biol 1962; 5:248-250.
-
(1962)
J Mol Biol
, vol.5
, pp. 248-250
-
-
Kallen, R.G.1
Simon, M.2
Marmur, J.3
-
27
-
-
0034687768
-
An unexpectedly high excision capacity for mispaired 5-hydroxymethyluracil in human cell extracts
-
Rusmintratip V, Sowers LC. An unexpectedly high excision capacity for mispaired 5-hydroxymethyluracil in human cell extracts. Proc Natl Acad Sci U S A 2000; 97:14183-14187.
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, pp. 14183-14187
-
-
Rusmintratip, V.1
Sowers, L.C.2
-
28
-
-
79955538247
-
Hydroxylation of 5-methylcytosine by TET1 promotes active DNA demethylation in the adult brain
-
Guo JU, Su Y, Zhong C, Ming GL, Song H. Hydroxylation of 5-methylcytosine by TET1 promotes active DNA demethylation in the adult brain. Cell 2011; 145:423-434.
-
(2011)
Cell
, vol.145
, pp. 423-434
-
-
Guo, J.U.1
Su, Y.2
Zhong, C.3
Ming, G.L.4
Song, H.5
-
29
-
-
79959937861
-
Thymine DNA glycosylase is essential for active DNA demethylation by linked deamination-base excision repair
-
Cortellino S, Xu J, Sannai M, Moore R, Caretti E, Cigliano A, Le CM, Devarajan K, Wessels A, Soprano D, Abramowitz LK, Bartolomei MS, et al. Thymine DNA glycosylase is essential for active DNA demethylation by linked deamination-base excision repair. Cell 2011; 146:67-79.
-
(2011)
Cell
, vol.146
, pp. 67-79
-
-
Cortellino, S.1
Xu, J.2
Sannai, M.3
Moore, R.4
Caretti, E.5
Cigliano, A.6
Le, C.M.7
Devarajan, K.8
Wessels, A.9
Soprano, D.10
Abramowitz, L.K.11
Bartolomei, M.S.12
-
30
-
-
33645136996
-
Minor contribution of direct ionization to DNA base damage induced by heavy ions
-
Douki T, Ravanat JL, Pouget JP, Testard I, Cadet J. Minor contribution of direct ionization to DNA base damage induced by heavy ions. Int J Radiat Biol 2006; 82:119-127.
-
(2006)
Int J Radiat Biol
, vol.82
, pp. 119-127
-
-
Douki, T.1
Ravanat, J.L.2
Pouget, J.P.3
Testard, I.4
Cadet, J.5
-
31
-
-
84898814950
-
Are 8-oxoguanine (8-oxoGua) and 5-hydroxymethyluracil (5-hmUra) oxidatively damaged DNA bases or transcription (epigenetic) marks?
-
Zarakowska E, Gackowski D, Foksinski M, Olinski R. Are 8-oxoguanine (8-oxoGua) and 5-hydroxymethyluracil (5-hmUra) oxidatively damaged DNA bases or transcription (epigenetic) marks? Mutat Res 2014; 764-765:58-63.
-
(2014)
Mutat Res
, vol.764-765
, pp. 58-63
-
-
Zarakowska, E.1
Gackowski, D.2
Foksinski, M.3
Olinski, R.4
-
32
-
-
83855163995
-
Uncovering the role of 5-hydroxymethylcytosine in the epigenome
-
Branco MR, Ficz G, Reik W. Uncovering the role of 5-hydroxymethylcytosine in the epigenome. Nat Rev Genet 2011; 13:7-13.
-
(2011)
Nat Rev Genet
, vol.13
, pp. 7-13
-
-
Branco, M.R.1
Ficz, G.2
Reik, W.3
-
33
-
-
84865329141
-
AID/APOBEC deaminases disfavor modified cytosines implicated in DNA demethylation
-
Nabel CS, Jia H, Ye Y, Shen L, Goldschmidt HL, Stivers JT, Zhang Y, Kohli RM. AID/APOBEC deaminases disfavor modified cytosines implicated in DNA demethylation. Nat Chem Biol 2012; 8:751-758.
-
(2012)
Nat Chem Biol
, vol.8
, pp. 751-758
-
-
Nabel, C.S.1
Jia, H.2
Ye, Y.3
Shen, L.4
Goldschmidt, H.L.5
Stivers, J.T.6
Zhang, Y.7
Kohli, R.M.8
-
34
-
-
33747876747
-
Activation-induced cytidine deaminase (AID) is expressed in normal spermatogenesis but only infrequently in testicular germ cell tumours
-
Schreck S, Buettner M, Kremmer E, Bogdan M, Herbst H, Niedobitek G. Activation-induced cytidine deaminase (AID) is expressed in normal spermatogenesis but only infrequently in testicular germ cell tumours. J Pathol 2006; 210:26-31.
-
(2006)
J Pathol
, vol.210
, pp. 26-31
-
-
Schreck, S.1
Buettner, M.2
Kremmer, E.3
Bogdan, M.4
Herbst, H.5
Niedobitek, G.6
-
35
-
-
25444527785
-
APOBEC4, a new member of the AID/APOBEC family of polynucleotide (deoxy)cytidine deaminases predicted by computational analysis
-
Rogozin IB, Basu MK, Jordan IK, Pavlov YI, Koonin EV. APOBEC4, a new member of the AID/APOBEC family of polynucleotide (deoxy)cytidine deaminases predicted by computational analysis. Cell Cycle 2005; 4:1281-1285.
-
(2005)
Cell Cycle
, vol.4
, pp. 1281-1285
-
-
Rogozin, I.B.1
Basu, M.K.2
Jordan, I.K.3
Pavlov, Y.I.4
Koonin, E.V.5
-
36
-
-
84864722177
-
5-Formylcytosine and 5-carboxylcytosine reduce the rate and substrate specificity of RNA polymerase II transcription
-
Kellinger MW, Song CX, Chong J, Lu XY, He C, Wang D. 5-Formylcytosine and 5-carboxylcytosine reduce the rate and substrate specificity of RNA polymerase II transcription. Nat Struct Mol Biol 2012; 19:831-833.
-
(2012)
Nat Struct Mol Biol
, vol.19
, pp. 831-833
-
-
Kellinger, M.W.1
Song, C.X.2
Chong, J.3
Lu, X.Y.4
He, C.5
Wang, D.6
-
37
-
-
84876907152
-
Genome-wide profiling of 5-formylcytosine reveals its roles in epigenetic priming
-
Song CX, Szulwach KE, Dai Q, Fu Y, Mao SQ, Lin L, Street C, Li Y, Poidevin M, Wu H, Gao J, Liu P, et al. Genome-wide profiling of 5-formylcytosine reveals its roles in epigenetic priming. Cell 2013; 153:678-691.
-
(2013)
Cell
, vol.153
, pp. 678-691
-
-
Song, C.X.1
Szulwach, K.E.2
Dai, Q.3
Fu, Y.4
Mao, S.Q.5
Lin, L.6
Street, C.7
Li, Y.8
Poidevin, M.9
Wu, H.10
Gao, J.11
Liu, P.12
-
38
-
-
84869044795
-
Excision of 5-hydroxymethyluracil and 5-carboxylcytosine by the thymine DNA glycosylase domain: its structural basis and implications for active DNA demethylation
-
Hashimoto H, Hong S, Bhagwat AS, Zhang X, Cheng X. Excision of 5-hydroxymethyluracil and 5-carboxylcytosine by the thymine DNA glycosylase domain: its structural basis and implications for active DNA demethylation. Nucleic Acids Res 2012; 40:10203-10214.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 10203-10214
-
-
Hashimoto, H.1
Hong, S.2
Bhagwat, A.S.3
Zhang, X.4
Cheng, X.5
-
39
-
-
84869016883
-
New functions for DNA modifications by TET-JBP
-
Huang Y, Rao A. New functions for DNA modifications by TET-JBP. Nat Struct Mol Biol 2012; 19:1061-1064.
-
(2012)
Nat Struct Mol Biol
, vol.19
, pp. 1061-1064
-
-
Huang, Y.1
Rao, A.2
-
40
-
-
84865683794
-
Glucosylated hydroxymethyluracil, DNA base J, prevents transcriptional readthrough in Leishmania
-
van Luenen HG, Farris C, Jan S, Genest PA, Tripathi P, Velds A, Kerkhoven RM, Nieuwland M, Haydock A, Ramasamy G, Vainio S, Heidebrecht T, et al. Glucosylated hydroxymethyluracil, DNA base J, prevents transcriptional readthrough in Leishmania. Cell 2012; 150:909-921.
-
(2012)
Cell
, vol.150
, pp. 909-921
-
-
van Luenen, H.G.1
Farris, C.2
Jan, S.3
Genest, P.A.4
Tripathi, P.5
Velds, A.6
Kerkhoven, R.M.7
Nieuwland, M.8
Haydock, A.9
Ramasamy, G.10
Vainio, S.11
Heidebrecht, T.12
-
41
-
-
84906832291
-
Comparison of epigenetic mediator expression and function in mouse and human embryonic blastomeres
-
(in press). Published online ahead of print 12 May 2014
-
Chavez SL, McElroy SL, Bossert NL, De Jonge CJ, Rodriguez MV, Leong DE, Behr B, Westphal LM, Reijo Pera RA. Comparison of epigenetic mediator expression and function in mouse and human embryonic blastomeres. Hum Mol Genet (in press). Published online ahead of print 12 May 2014; DOI 10.1093/hmg/ddu212.
-
Hum Mol Genet
-
-
Chavez, S.L.1
McElroy, S.L.2
Bossert, N.L.3
De Jonge, C.J.4
Rodriguez, M.V.5
Leong, D.E.6
Behr, B.7
Westphal, L.M.8
Reijo Pera, R.A.9
-
42
-
-
77950004985
-
Sperm DNA: organization, protection and vulnerability: from basic science to clinical applications: a position report
-
Barratt CL, Aitken RJ, Bjorndahl L, Carrell DT, de Boer P, Kvist U, Lewis SE, Perreault SD, Perry MJ, Ramos L, Robaire B, Ward S, et al. Sperm DNA: organization, protection and vulnerability: from basic science to clinical applications: a position report. Hum Reprod 2010; 25:824-838.
-
(2010)
Hum Reprod
, vol.25
, pp. 824-838
-
-
Barratt, C.L.1
Aitken, R.J.2
Bjorndahl, L.3
Carrell, D.T.4
de Boer, P.5
Kvist, U.6
Lewis, S.E.7
Perreault, S.D.8
Perry, M.J.9
Ramos, L.10
Robaire, B.11
Ward, S.12
|