메뉴 건너뛰기




Volumn 764-765, Issue , 2014, Pages 58-63

Are 8-oxoguanine (8-oxoGua) and 5-hydroxymethyluracil (5-hmUra) oxidatively damaged DNA bases or transcription (epigenetic) marks?

Author keywords

5 hmUra; 8 oxodG; Active DNA demethylation; Epigenetic changes; Gene expression

Indexed keywords

5 HYDROXYMETHYLURACIL; 8 HYDROXYGUANINE; BACTERIAL DNA; BRAIN EXTRACT; CYTIDINE DEAMINASE; DNA BASE; MEMBRANE PROTEIN; TEN ELEVEN TRANSLOCATION 1 PROTEIN; THYMINE; THYMUS EXTRACT; UNCLASSIFIED DRUG;

EID: 84898814950     PISSN: 13835718     EISSN: 18793592     Source Type: Journal    
DOI: 10.1016/j.mrgentox.2013.09.002     Document Type: Article
Times cited : (38)

References (48)
  • 3
    • 77954563673 scopus 로고    scopus 로고
    • 8-Oxo-7,8-dihydroguanine: links to gene expression, aging, and defense against oxidative stress
    • Radak Z., Boldogh I. 8-Oxo-7,8-dihydroguanine: links to gene expression, aging, and defense against oxidative stress. Free Radic. Biol. Med. 2010, 49:587-596.
    • (2010) Free Radic. Biol. Med. , vol.49 , pp. 587-596
    • Radak, Z.1    Boldogh, I.2
  • 4
    • 0035814925 scopus 로고    scopus 로고
    • Chromatin remodeling enzymes: who's on first?
    • Fry C.J., Peterson C.L. Chromatin remodeling enzymes: who's on first?. Curr. Biol. 2001, 11:R185-R197.
    • (2001) Curr. Biol. , vol.11
    • Fry, C.J.1    Peterson, C.L.2
  • 5
    • 77249162266 scopus 로고    scopus 로고
    • Maintenance of a functional higher order chromatin structure: the role of the nuclear matrix in normal and disease states
    • Linnemann A.K., Krawetz S.A. Maintenance of a functional higher order chromatin structure: the role of the nuclear matrix in normal and disease states. Gene Ther. Mol. Biol. 2009, 13:231-243.
    • (2009) Gene Ther. Mol. Biol. , vol.13 , pp. 231-243
    • Linnemann, A.K.1    Krawetz, S.A.2
  • 6
    • 70350478109 scopus 로고    scopus 로고
    • Oxidatively generated damage to cellular DNA: mechanic aspects
    • Springer Science+Business Media, Landes Bioscience, New York, Austin, M.D. Evans, M.S. Cooke (Eds.)
    • Cadet J., Douki T., Badouard C., Favier A., Ravanat J.L. Oxidatively generated damage to cellular DNA: mechanic aspects. Oxidative Damage to Nucleic Acids 2007, 1-13. Springer Science+Business Media, Landes Bioscience, New York, Austin. M.D. Evans, M.S. Cooke (Eds.).
    • (2007) Oxidative Damage to Nucleic Acids , pp. 1-13
    • Cadet, J.1    Douki, T.2    Badouard, C.3    Favier, A.4    Ravanat, J.L.5
  • 7
    • 83855163995 scopus 로고    scopus 로고
    • Uncovering the role of 5-hydroxymethylcytosine in the epigenome
    • Branco M.R., Ficz G., Reik W. Uncovering the role of 5-hydroxymethylcytosine in the epigenome. Nat. Rev. Genet. 2012, 13:7-13.
    • (2012) Nat. Rev. Genet. , vol.13 , pp. 7-13
    • Branco, M.R.1    Ficz, G.2    Reik, W.3
  • 8
    • 79955538247 scopus 로고    scopus 로고
    • Hydroxylation of 5-methylcytosine by TET1 promotes active DNA demethylation in the adult brain
    • Guo J.U., Su Y., Zhong C., Ming G.L., Song H. Hydroxylation of 5-methylcytosine by TET1 promotes active DNA demethylation in the adult brain. Cell 2011, 145:423-434.
    • (2011) Cell , vol.145 , pp. 423-434
    • Guo, J.U.1    Su, Y.2    Zhong, C.3    Ming, G.L.4    Song, H.5
  • 9
    • 0024351482 scopus 로고
    • Electrophoretic analyses of nucleosomes and other protein-DNA complexes
    • Huang S.Y., Garrard W.T. Electrophoretic analyses of nucleosomes and other protein-DNA complexes. Methods Enzymol. 1989, 170:116-142.
    • (1989) Methods Enzymol. , vol.170 , pp. 116-142
    • Huang, S.Y.1    Garrard, W.T.2
  • 10
    • 40649093505 scopus 로고    scopus 로고
    • The relationship between 8-oxo-7,8-dihydro-2'-deoxyguanosine level and extent of cytosine methylation in leukocytes DNA of healthy subjects and in patients with colon adenomas and carcinomas
    • Guz J., Foksinski M., Siomek A., Gackowski D., Rozalski R., Dziaman T., Szpila A., Olinski R. The relationship between 8-oxo-7,8-dihydro-2'-deoxyguanosine level and extent of cytosine methylation in leukocytes DNA of healthy subjects and in patients with colon adenomas and carcinomas. Mutat. Res. 2008, 640:170-173.
    • (2008) Mutat. Res. , vol.640 , pp. 170-173
    • Guz, J.1    Foksinski, M.2    Siomek, A.3    Gackowski, D.4    Rozalski, R.5    Dziaman, T.6    Szpila, A.7    Olinski, R.8
  • 11
    • 8944229590 scopus 로고
    • 4-(1,2,4-Triazol-1-yl)- and 4-(3-nitro-1,2,4-triazol-1-yl)-1-(β-d-2,3,5-tri-O-acetylarabinofuranosyl)pyrimidin-2(1H)-ones. Valuable intermediates in the synthesis of derivatives of 1-(β-d-arabinofuranosyl)cytosine (ara-C)
    • Divakar K.J., Reese C.B. 4-(1,2,4-Triazol-1-yl)- and 4-(3-nitro-1,2,4-triazol-1-yl)-1-(β-d-2,3,5-tri-O-acetylarabinofuranosyl)pyrimidin-2(1H)-ones. Valuable intermediates in the synthesis of derivatives of 1-(β-d-arabinofuranosyl)cytosine (ara-C). J. Chem. Soc., Perkin Trans. 1982, 1:1171-1176.
    • (1982) J. Chem. Soc., Perkin Trans. , vol.1 , pp. 1171-1176
    • Divakar, K.J.1    Reese, C.B.2
  • 12
    • 0035808970 scopus 로고    scopus 로고
    • Facile methods for the synthesis of 5-formylcytidine
    • Rahman A.A.H.A., Wada T., Saigo K. Facile methods for the synthesis of 5-formylcytidine. Tetrahedron Lett. 2001, 42:1061-1063.
    • (2001) Tetrahedron Lett. , vol.42 , pp. 1061-1063
    • Rahman, A.A.H.A.1    Wada, T.2    Saigo, K.3
  • 13
    • 67650497063 scopus 로고    scopus 로고
    • Measurement of (5'R)- and (5'S)-8,5'-cyclo-2'-deoxyadenosines in DNA in vivo by liquid chromatography/isotope-dilution tandem mass spectrometry
    • Jaruga P., Xiao Y., Nelson B.C., Dizdaroglu M. Measurement of (5'R)- and (5'S)-8,5'-cyclo-2'-deoxyadenosines in DNA in vivo by liquid chromatography/isotope-dilution tandem mass spectrometry. Biochem. Biophys. Res. Commun. 2009, 386:656-660.
    • (2009) Biochem. Biophys. Res. Commun. , vol.386 , pp. 656-660
    • Jaruga, P.1    Xiao, Y.2    Nelson, B.C.3    Dizdaroglu, M.4
  • 14
    • 0034652853 scopus 로고    scopus 로고
    • Endogenous oxidative DNA base modifications analysed with repair enzymes and GC/MS technique
    • Jaruga P., Speina E., Gackowski D., Tudek B., Olinski R. Endogenous oxidative DNA base modifications analysed with repair enzymes and GC/MS technique. Nucleic Acids Res. 2000, 28:E16.
    • (2000) Nucleic Acids Res. , vol.28
    • Jaruga, P.1    Speina, E.2    Gackowski, D.3    Tudek, B.4    Olinski, R.5
  • 15
    • 2342528298 scopus 로고    scopus 로고
    • Global survey of chromatin accessibility using DNA microarrays
    • Weil M.R., Widlak P., Minna J.D., Garner H.R. Global survey of chromatin accessibility using DNA microarrays. Genome Res. 2004, 14:1374-1381.
    • (2004) Genome Res. , vol.14 , pp. 1374-1381
    • Weil, M.R.1    Widlak, P.2    Minna, J.D.3    Garner, H.R.4
  • 16
    • 2342583291 scopus 로고    scopus 로고
    • DNA microarrays, a novel approach in studies of chromatin structure
    • Widlak P. DNA microarrays, a novel approach in studies of chromatin structure. Acta Biochim. Pol. 2004, 51:1-8.
    • (2004) Acta Biochim. Pol. , vol.51 , pp. 1-8
    • Widlak, P.1
  • 17
    • 11244327638 scopus 로고    scopus 로고
    • Establishing the background level of base oxidation in human lymphocyte DNA: results of an interlaboratory validation study
    • Gedik C.M., Collins A. Establishing the background level of base oxidation in human lymphocyte DNA: results of an interlaboratory validation study. FASEB J. 2005, 19:82-84.
    • (2005) FASEB J. , vol.19 , pp. 82-84
    • Gedik, C.M.1    Collins, A.2
  • 18
    • 0035826678 scopus 로고    scopus 로고
    • How different DNA-binding proteins affect long-range oxidative damage to DNA
    • Rajski S.R., Barton J.K. How different DNA-binding proteins affect long-range oxidative damage to DNA. Biochemistry 2001, 40:5556-5564.
    • (2001) Biochemistry , vol.40 , pp. 5556-5564
    • Rajski, S.R.1    Barton, J.K.2
  • 19
    • 0019169859 scopus 로고
    • Supercoiled loops and eucaryotic DNA replication
    • Vogelstein B., Pardoll D.M., Coffey D.S. Supercoiled loops and eucaryotic DNA replication. Cell 1980, 22:79-85.
    • (1980) Cell , vol.22 , pp. 79-85
    • Vogelstein, B.1    Pardoll, D.M.2    Coffey, D.S.3
  • 20
    • 0031214128 scopus 로고    scopus 로고
    • Chromatin domains and nuclear compartments: establishing sites of gene expression in eukaryotic nuclei
    • Jackson D.A. Chromatin domains and nuclear compartments: establishing sites of gene expression in eukaryotic nuclei. Mol. Biol. Rep. 1997, 24:209-220.
    • (1997) Mol. Biol. Rep. , vol.24 , pp. 209-220
    • Jackson, D.A.1
  • 22
    • 0023050122 scopus 로고
    • Cohabitation of scaffold binding regions with upstream/enhancer elements of three developmentally regulated genes of D. melanogaster
    • Gasser S.M., Laemmli U.K. Cohabitation of scaffold binding regions with upstream/enhancer elements of three developmentally regulated genes of D. melanogaster. Cell 1986, 46:521-530.
    • (1986) Cell , vol.46 , pp. 521-530
    • Gasser, S.M.1    Laemmli, U.K.2
  • 23
    • 48149099902 scopus 로고    scopus 로고
    • 8,5'-Cyclopurine-2'-deoxynucleosides in DNA: mechanisms of formation, measurement, repair and biological effects
    • Jaruga P., Dizdaroglu M. 8,5'-Cyclopurine-2'-deoxynucleosides in DNA: mechanisms of formation, measurement, repair and biological effects. DNA Repair (Amst) 2008, 7:1413-1425.
    • (2008) DNA Repair (Amst) , vol.7 , pp. 1413-1425
    • Jaruga, P.1    Dizdaroglu, M.2
  • 24
    • 77954053278 scopus 로고    scopus 로고
    • LSD1-mediated demethylation of histone H3 lysine 4 triggers Myc-induced transcription
    • Amente S., Bertoni A., Morano A., Lania L., Avvedimento E.V., Majello B. LSD1-mediated demethylation of histone H3 lysine 4 triggers Myc-induced transcription. Oncogene 2010, 29:3691-3702.
    • (2010) Oncogene , vol.29 , pp. 3691-3702
    • Amente, S.1    Bertoni, A.2    Morano, A.3    Lania, L.4    Avvedimento, E.V.5    Majello, B.6
  • 26
    • 41549132495 scopus 로고    scopus 로고
    • LSD1: oxidative chemistry for multifaceted functions in chromatin regulation
    • Forneris F., Binda C., Battaglioli E., Mattevi A. LSD1: oxidative chemistry for multifaceted functions in chromatin regulation. Trends Biochem. Sci. 2008, 33:181-189.
    • (2008) Trends Biochem. Sci. , vol.33 , pp. 181-189
    • Forneris, F.1    Binda, C.2    Battaglioli, E.3    Mattevi, A.4
  • 29
    • 0042026553 scopus 로고    scopus 로고
    • Oxidized guanine lesions as modulators of gene transcription. Altered p50 binding affinity and repair shielding by 7,8-dihydro-8-oxo-2'-deoxyguanosine lesions in the NF-kappaB promoter element
    • Hailer-Morrison M.K., Kotler J.M., Martin B.D., Sugden K.D. Oxidized guanine lesions as modulators of gene transcription. Altered p50 binding affinity and repair shielding by 7,8-dihydro-8-oxo-2'-deoxyguanosine lesions in the NF-kappaB promoter element. Biochemistry 2003, 42:9761-9770.
    • (2003) Biochemistry , vol.42 , pp. 9761-9770
    • Hailer-Morrison, M.K.1    Kotler, J.M.2    Martin, B.D.3    Sugden, K.D.4
  • 30
    • 77952564842 scopus 로고    scopus 로고
    • Oxidative stress triggers the preferential assembly of base excision repair complexes on open chromatin regions
    • Amouroux R., Campalans A., Epe B., Radicella J.P. Oxidative stress triggers the preferential assembly of base excision repair complexes on open chromatin regions. Nucleic Acids Res. 2010, 38:2878-2890.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 2878-2890
    • Amouroux, R.1    Campalans, A.2    Epe, B.3    Radicella, J.P.4
  • 31
    • 0036184090 scopus 로고    scopus 로고
    • Association of CBP/p300 acetylase and thymine DNA glycosylase links DNA repair and transcription
    • Tini M., Benecke A., Um S.J., Torchia J., Evans R.M., Chambon P. Association of CBP/p300 acetylase and thymine DNA glycosylase links DNA repair and transcription. Mol. Cell 2002, 9:265-277.
    • (2002) Mol. Cell , vol.9 , pp. 265-277
    • Tini, M.1    Benecke, A.2    Um, S.J.3    Torchia, J.4    Evans, R.M.5    Chambon, P.6
  • 32
    • 67650638696 scopus 로고    scopus 로고
    • Localization of X-ray cross complementing gene 1 protein in the nuclear matrix is controlled by casein kinase II-dependent phosphorylation in response to oxidative damage
    • Kubota Y., Takanami T., Higashitani A., Horiuchi S. Localization of X-ray cross complementing gene 1 protein in the nuclear matrix is controlled by casein kinase II-dependent phosphorylation in response to oxidative damage. DNA Repair (Amst) 2009, 8:953-960.
    • (2009) DNA Repair (Amst) , vol.8 , pp. 953-960
    • Kubota, Y.1    Takanami, T.2    Higashitani, A.3    Horiuchi, S.4
  • 33
    • 37249087549 scopus 로고    scopus 로고
    • Chemical-biological fingerprinting: probing the properties of DNA lesions formed by peroxynitrite
    • Delaney S., Delaney J.C., Essigmann J.M. Chemical-biological fingerprinting: probing the properties of DNA lesions formed by peroxynitrite. Chem. Res. Toxicol. 2007, 20:1718-1729.
    • (2007) Chem. Res. Toxicol. , vol.20 , pp. 1718-1729
    • Delaney, S.1    Delaney, J.C.2    Essigmann, J.M.3
  • 34
    • 33748749077 scopus 로고    scopus 로고
    • The roles of specific glycosylases in determining the mutagenic consequences of clustered DNA base damage
    • Shikazono N., Pearson C., O'Neill P., Thacker J. The roles of specific glycosylases in determining the mutagenic consequences of clustered DNA base damage. Nucleic Acids Res. 2006, 34:3722-3730.
    • (2006) Nucleic Acids Res. , vol.34 , pp. 3722-3730
    • Shikazono, N.1    Pearson, C.2    O'Neill, P.3    Thacker, J.4
  • 36
    • 18744368449 scopus 로고    scopus 로고
    • A global DNA repair mechanism involving the Cockayne syndrome B (CSB) gene product can prevent the in vivo accumulation of endogenous oxidative DNA base damage
    • Osterod M., Larsen E., Le P.F., Hengstler J.G., Van Der Horst G.T., Boiteux S., Klungland A., Epe B. A global DNA repair mechanism involving the Cockayne syndrome B (CSB) gene product can prevent the in vivo accumulation of endogenous oxidative DNA base damage. Oncogene 2002, 21:8232-8239.
    • (2002) Oncogene , vol.21 , pp. 8232-8239
    • Osterod, M.1    Larsen, E.2    Le, P.F.3    Hengstler, J.G.4    Van Der Horst, G.T.5    Boiteux, S.6    Klungland, A.7    Epe, B.8
  • 39
    • 80052933429 scopus 로고    scopus 로고
    • DNA demethylation dynamics
    • Bhutani N., Burns D.M., Blau H.M. DNA demethylation dynamics. Cell 2011, 146:866-872.
    • (2011) Cell , vol.146 , pp. 866-872
    • Bhutani, N.1    Burns, D.M.2    Blau, H.M.3
  • 41
    • 0033792418 scopus 로고    scopus 로고
    • High-performance liquid chromatography-tandem mass spectrometry measurement of radiation-induced base damage to isolated and cellular DNA
    • Frelon S., Douki T., Ravanat J.L., Pouget J.P., Tornabene C., Cadet J. High-performance liquid chromatography-tandem mass spectrometry measurement of radiation-induced base damage to isolated and cellular DNA. Chem. Res. Toxicol. 2000, 13:1002-1010.
    • (2000) Chem. Res. Toxicol. , vol.13 , pp. 1002-1010
    • Frelon, S.1    Douki, T.2    Ravanat, J.L.3    Pouget, J.P.4    Tornabene, C.5    Cadet, J.6
  • 42
    • 33645136996 scopus 로고    scopus 로고
    • Minor contribution of direct ionization to DNA base damage inducedby heavy ions
    • Douki T., Ravanat J.L., Pouget J.P., Testard I., Cadet J. Minor contribution of direct ionization to DNA base damage inducedby heavy ions. Int. J. Radiat. Biol. 2006, 82:119-127.
    • (2006) Int. J. Radiat. Biol. , vol.82 , pp. 119-127
    • Douki, T.1    Ravanat, J.L.2    Pouget, J.P.3    Testard, I.4    Cadet, J.5
  • 43
    • 0025737777 scopus 로고
    • Site directed substitution of 5-hydroxymethyluracil for thymine in replicating phi X-174am3 DNA via synthesis of 5-hydroxymethyl-2'-deoxyuridine-5'-triphosphate
    • Levy D.D., Teebor G.W. Site directed substitution of 5-hydroxymethyluracil for thymine in replicating phi X-174am3 DNA via synthesis of 5-hydroxymethyl-2'-deoxyuridine-5'-triphosphate. Nucleic Acids Res. 1991, 19:3337-3343.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 3337-3343
    • Levy, D.D.1    Teebor, G.W.2
  • 44
    • 0027257707 scopus 로고
    • Structures of base pairs with 5-(hydroxymethyl)-2'-deoxyuridine in DNA determined by NMR spectroscopy
    • Mellac S., Fazakerley G.V., Sowers L.C. Structures of base pairs with 5-(hydroxymethyl)-2'-deoxyuridine in DNA determined by NMR spectroscopy. Biochemistry 1993, 32:7779-7786.
    • (1993) Biochemistry , vol.32 , pp. 7779-7786
    • Mellac, S.1    Fazakerley, G.V.2    Sowers, L.C.3
  • 45
    • 0001147412 scopus 로고
    • The new occurrence of a new pyrimidine base replacing thymine in a bacteriophage DNA:5-hydroxymethyl uracil
    • Kallen R.G., Simon M., Marmur J. The new occurrence of a new pyrimidine base replacing thymine in a bacteriophage DNA:5-hydroxymethyl uracil. J. Mol. Biol. 1962, 5:248-250.
    • (1962) J. Mol. Biol. , vol.5 , pp. 248-250
    • Kallen, R.G.1    Simon, M.2    Marmur, J.3
  • 46
    • 0034687768 scopus 로고    scopus 로고
    • An unexpectedly high excision capacity for mispaired 5-hydroxymethyluracil in human cell extracts
    • Rusmintratip V., Sowers L.C. An unexpectedly high excision capacity for mispaired 5-hydroxymethyluracil in human cell extracts. Proc. Natl. Acad. Sci. U.S.A. 2000, 97:14183-14187.
    • (2000) Proc. Natl. Acad. Sci. U.S.A. , vol.97 , pp. 14183-14187
    • Rusmintratip, V.1    Sowers, L.C.2
  • 47
    • 84856158823 scopus 로고    scopus 로고
    • The curious chemical biology of cytosine: deamination, methylation, and oxidation as modulators of genomic potential
    • Nabel C.S., Manning S.A., Kohli R.M. The curious chemical biology of cytosine: deamination, methylation, and oxidation as modulators of genomic potential. ACS Chem. Biol. 2012, 7:20-30.
    • (2012) ACS Chem. Biol. , vol.7 , pp. 20-30
    • Nabel, C.S.1    Manning, S.A.2    Kohli, R.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.