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Volumn 8, Issue 1, 2015, Pages

The DNA methylation drift of the atherosclerotic aorta increases with lesion progression

Author keywords

Aorta; Atherosclerosis; DNA methylation; Genome wide analysis

Indexed keywords

GENOMIC DNA; TRANSCRIPTION FACTOR; TRANSCRIPTOME;

EID: 84928028386     PISSN: None     EISSN: 17558794     Source Type: Journal    
DOI: 10.1186/s12920-015-0085-1     Document Type: Article
Times cited : (91)

References (40)
  • 1
    • 34249279527 scopus 로고    scopus 로고
    • Stability and flexibility of epigenetic gene regulation in mammalian development
    • Reik W. Stability and flexibility of epigenetic gene regulation in mammalian development. Nature. 2007;447:425-32.
    • (2007) Nature , vol.447 , pp. 425-432
    • Reik, W.1
  • 2
    • 84889679340 scopus 로고    scopus 로고
    • Integrating DNA methylation dynamics into a framework for understanding epigenetic codes
    • Szulwach KE, Jin P. Integrating DNA methylation dynamics into a framework for understanding epigenetic codes. Bioessays. 2014;36:107-17.
    • (2014) Bioessays , vol.36 , pp. 107-117
    • Szulwach, K.E.1    Jin, P.2
  • 3
    • 84886859638 scopus 로고    scopus 로고
    • Chromatin dynamics during cellular reprogramming
    • Apostolou E, Hochedlinger K. Chromatin dynamics during cellular reprogramming. Nature. 2013;502:462-71.
    • (2013) Nature , vol.502 , pp. 462-471
    • Apostolou, E.1    Hochedlinger, K.2
  • 4
    • 0043093697 scopus 로고    scopus 로고
    • Transposable elements: Targets for early nutritional effects on epigenetic gene regulation
    • Waterland RA, Jirtle RL. Transposable elements: targets for early nutritional effects on epigenetic gene regulation. Mol Cell Biol. 2003;23:5293-300.
    • (2003) Mol Cell Biol , vol.23 , pp. 5293-5300
    • Waterland, R.A.1    Jirtle, R.L.2
  • 5
    • 0032744380 scopus 로고    scopus 로고
    • Can reduced folic acid and vitamin B12 levels cause deficient DNA methylation producing mutations which initiate atherosclerosis?
    • Newman PE. Can reduced folic acid and vitamin B12 levels cause deficient DNA methylation producing mutations which initiate atherosclerosis? Med Hypotheses. 1999;53:421-4.
    • (1999) Med Hypotheses , vol.53 , pp. 421-424
    • Newman, P.E.1
  • 6
    • 77956058729 scopus 로고    scopus 로고
    • Epigenetics and cardiovascular disease
    • Ordovás JM, Smith CE. Epigenetics and cardiovascular disease. Nat Rev Cardiol. 2010;7:510-9.
    • (2010) Nat Rev Cardiol , vol.7 , pp. 510-519
    • Ordovás, J.M.1    Smith, C.E.2
  • 8
    • 84897022813 scopus 로고    scopus 로고
    • Unraveling the DNA methylome of atherosclerosis
    • Zaina S. Unraveling the DNA methylome of atherosclerosis. Curr Opin Lipidol. 2014;25:148-53.
    • (2014) Curr Opin Lipidol , vol.25 , pp. 148-153
    • Zaina, S.1
  • 10
    • 84903784400 scopus 로고    scopus 로고
    • Flow-dependent epigenetic DNA methylation regulates endothelial gene expression and atherosclerosis
    • Dunn J, Qiu H, Kim S, Jjingo D, Hoffman R, Kim CW, et al. Flow-dependent epigenetic DNA methylation regulates endothelial gene expression and atherosclerosis. J Clin Invest. 2014;124:3187-99.
    • (2014) J Clin Invest , vol.124 , pp. 3187-3199
    • Dunn, J.1    Qiu, H.2    Kim, S.3    Jjingo, D.4    Hoffman, R.5    Kim, C.W.6
  • 11
    • 84914132768 scopus 로고    scopus 로고
    • Inhibiting DNA Methylation by 5-aza-2′-deoxycytidine ameliorates atherosclerosis through suppressing macrophage inflammation
    • [Epub ahead of print]
    • Cao Q, Wang X, Jia L, Mondal AK, Diallo A, Hawkins GA, et al. Inhibiting DNA Methylation by 5-aza-2′-deoxycytidine ameliorates atherosclerosis through suppressing macrophage inflammation. Endocrinology. 2014. [Epub ahead of print].
    • (2014) Endocrinology
    • Cao, Q.1    Wang, X.2    Jia, L.3    Mondal, A.K.4    Diallo, A.5    Hawkins, G.A.6
  • 12
    • 84906050534 scopus 로고    scopus 로고
    • Epigenome-wide association study of fasting blood lipids in the genetics of lipid lowering drugs and diet network study
    • [Epub ahead of print]
    • Irvin MR, Zhi D, Joehanes R, Mendelson M, Aslibekyan S, Claas SA, et al. Epigenome-wide association study of fasting blood lipids in the genetics of lipid lowering drugs and diet network study. Circulation. 2014. [Epub ahead of print].
    • (2014) Circulation
    • Irvin, M.R.1    Zhi, D.2    Joehanes, R.3    Mendelson, M.4    Aslibekyan, S.5    Claas, S.A.6
  • 13
    • 84893065053 scopus 로고    scopus 로고
    • Epigenomewide association study of fasting measures of glucose, insulin, and HOMA-IR in the genetics of lipid lowering drugs and diet network study
    • Hidalgo B, Irvin MR, Sha J, Zhi D, Aslibekyan S, Absher D, et al. Epigenomewide association study of fasting measures of glucose, insulin, and HOMA-IR in the genetics of lipid lowering drugs and diet network study. Diabetes. 2014;63:801-7.
    • (2014) Diabetes , vol.63 , pp. 801-807
    • Hidalgo, B.1    Irvin, M.R.2    Sha, J.3    Zhi, D.4    Aslibekyan, S.5    Absher, D.6
  • 15
    • 79958754527 scopus 로고    scopus 로고
    • Validation of a DNA methylation microarray for 450,000 CpG sites in the human genome
    • Sandoval J, Heyn H, Moran S, Serra-Musach J, Pujana MA, Bibikova M, et al. Validation of a DNA methylation microarray for 450,000 CpG sites in the human genome. Epigenetics. 2011;6:692-702.
    • (2011) Epigenetics , vol.6 , pp. 692-702
    • Sandoval, J.1    Heyn, H.2    Moran, S.3    Serra-Musach, J.4    Pujana, M.A.5    Bibikova, M.6
  • 17
    • 0026592806 scopus 로고
    • Spontaneous hypercholesterolemia and arterial lesions in mice lacking apolipoprotein e
    • Zhang SH, Reddick RL, Piedrahita JA, Maeda N. Spontaneous hypercholesterolemia and arterial lesions in mice lacking apolipoprotein E. Science. 1992;258:468-71.
    • (1992) Science , vol.258 , pp. 468-471
    • Zhang, S.H.1    Reddick, R.L.2    Piedrahita, J.A.3    Maeda, N.4
  • 18
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with burrowswheeler transform
    • Li H, Durbin R. Fast and accurate short read alignment with burrowswheeler transform. Bioinformatics. 2009;25:1754-60.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 20
    • 78649475003 scopus 로고    scopus 로고
    • Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis
    • Du P, Zhang X, Huang CC, Jafari N, Kibbe WA, Hou L, et al. Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis. BMC Bioinformatics. 2010;11:587.
    • (2010) BMC Bioinformatics , vol.11 , pp. 587
    • Du, P.1    Zhang, X.2    Huang, C.C.3    Jafari, N.4    Kibbe, W.A.5    Hou, L.6
  • 21
    • 0030052857 scopus 로고    scopus 로고
    • An essential role for platelet-derived growth factor in neointima formation in human saphenous vein in vitro
    • George SJ, Williams A, Newby AC. An essential role for platelet-derived growth factor in neointima formation in human saphenous vein in vitro. Atherosclerosis. 1996;120:227-40.
    • (1996) Atherosclerosis , vol.120 , pp. 227-240
    • George, S.J.1    Williams, A.2    Newby, A.C.3
  • 22
    • 84865680532 scopus 로고    scopus 로고
    • Prdm3 and Prdm16 are H3K9me1 methyltransferases required for mammalian heterochromatin integrity
    • Pinheiro I, Margueron R, Shukeir N, Eisold M, Fritzsch C, Richter FM, et al. Prdm3 and Prdm16 are H3K9me1 methyltransferases required for mammalian heterochromatin integrity. Cell. 2012;150:948-60.
    • (2012) Cell , vol.150 , pp. 948-960
    • Pinheiro, I.1    Margueron, R.2    Shukeir, N.3    Eisold, M.4    Fritzsch, C.5    Richter, F.M.6
  • 23
    • 83355163350 scopus 로고    scopus 로고
    • Peroxisome proliferator-activated receptor α (PPARα) induces PPARγ coactivator 1α (PGC-1α) gene expression and contributes to thermogenic activation of brown fat: Involvement of PRDM16
    • Hondares E, Rosell M, Díaz-Delfín J, Olmos Y, Monsalve M, Iglesias R, et al. Peroxisome proliferator-activated receptor α (PPARα) induces PPARγ coactivator 1α (PGC-1α) gene expression and contributes to thermogenic activation of brown fat: involvement of PRDM16. J Biol Chem. 2011;286:43112-22.
    • (2011) J Biol Chem , vol.286 , pp. 43112-43122
    • Hondares, E.1    Rosell, M.2    Díaz-Delfín, J.3    Olmos, Y.4    Monsalve, M.5    Iglesias, R.6
  • 24
    • 84863393314 scopus 로고    scopus 로고
    • A gene expression signature that classifies human atherosclerotic plaque by relative inflammation status
    • Puig O, Yuan J, Stepaniants S, Zieba R, Zycband E, Morris M, et al. A gene expression signature that classifies human atherosclerotic plaque by relative inflammation status. Circ Cardiovasc Genet. 2011;4:595-604.
    • (2011) Circ Cardiovasc Genet , vol.4 , pp. 595-604
    • Puig, O.1    Yuan, J.2    Stepaniants, S.3    Zieba, R.4    Zycband, E.5    Morris, M.6
  • 25
    • 84872175226 scopus 로고    scopus 로고
    • Integrative pathway dissection of molecular mechanisms of moxLDL-induced vascular smooth muscle phenotype transformation
    • Karagiannis GS, Weile J, Bader GD, Minta J. Integrative pathway dissection of molecular mechanisms of moxLDL-induced vascular smooth muscle phenotype transformation. BMC Cardiovasc Disord. 2013;13:4.
    • (2013) BMC Cardiovasc Disord , vol.13 , pp. 4
    • Karagiannis, G.S.1    Weile, J.2    Bader, G.D.3    Minta, J.4
  • 26
    • 0031886864 scopus 로고    scopus 로고
    • The peroxisome proliferatoractivated receptor-gamma is a negative regulator of macrophage activation
    • Ricote M, Li AC, Willson TM, Kelly CJ, Glass CK. The peroxisome proliferatoractivated receptor-gamma is a negative regulator of macrophage activation. Nature. 1998;391:79-82.
    • (1998) Nature , vol.391 , pp. 79-82
    • Ricote, M.1    Li, A.C.2    Willson, T.M.3    Kelly, C.J.4    Glass, C.K.5
  • 27
    • 84856194703 scopus 로고    scopus 로고
    • Genetic basis of atherosclerosis: Insights from mice and humans
    • Stylianou IM, Bauer RC, Reilly MP, Rader DJ. Genetic basis of atherosclerosis: insights from mice and humans. Circ Res. 2012;110:337-55.
    • (2012) Circ Res , vol.110 , pp. 337-355
    • Stylianou, I.M.1    Bauer, R.C.2    Reilly, M.P.3    Rader, D.J.4
  • 29
    • 47049083725 scopus 로고    scopus 로고
    • Detection of altered global DNA methylation in coronary artery disease patients
    • Sharma P, Kumar J, Garg G, Kumar A, Patowary A, Karthikeyan G, et al. Detection of altered global DNA methylation in coronary artery disease patients. DNA Cell Biol. 2008;27:357-65.
    • (2008) DNA Cell Biol , vol.27 , pp. 357-365
    • Sharma, P.1    Kumar, J.2    Garg, G.3    Kumar, A.4    Patowary, A.5    Karthikeyan, G.6
  • 30
    • 69249217999 scopus 로고    scopus 로고
    • Hypermethylation of estrogen receptor-alpha gene in atheromatosis patients and its correlation with homocysteine
    • Huang YS, Zhi YF, Wang SR. Hypermethylation of estrogen receptor-alpha gene in atheromatosis patients and its correlation with homocysteine. Pathophysiology. 2009;16:259-65.
    • (2009) Pathophysiology , vol.16 , pp. 259-265
    • Huang, Y.S.1    Zhi, Y.F.2    Wang, S.R.3
  • 31
    • 84873910693 scopus 로고    scopus 로고
    • SuperTAG methylation-specific digital karyotyping reveals uremia-induced epigenetic dysregulation of atherosclerosis-related genes
    • Zawada AM, Rogacev KS, Hummel B, Grün OS, Friedrich A, Rotter B, et al. SuperTAG methylation-specific digital karyotyping reveals uremia-induced epigenetic dysregulation of atherosclerosis-related genes. Circ Cardiovasc Genet. 2012;5:611-20.
    • (2012) Circ Cardiovasc Genet , vol.5 , pp. 611-620
    • Zawada, A.M.1    Rogacev, K.S.2    Hummel, B.3    Grün, O.S.4    Friedrich, A.5    Rotter, B.6
  • 32
    • 84865569776 scopus 로고    scopus 로고
    • Homocysteine activates vascular smooth muscle cells by DNA demethylation of platelet-derived growth factor in endothelial cells
    • Zhang D, Chen Y, Xie X, Liu J, Wang Q, Kong W, et al. Homocysteine activates vascular smooth muscle cells by DNA demethylation of platelet-derived growth factor in endothelial cells. J Mol Cell Cardiol. 2012;53:487-96.
    • (2012) J Mol Cell Cardiol , vol.53 , pp. 487-496
    • Zhang, D.1    Chen, Y.2    Xie, X.3    Liu, J.4    Wang, Q.5    Kong, W.6
  • 33
    • 24644463193 scopus 로고    scopus 로고
    • Inactivation of monocarboxylate transporter MCT3 by DNA methylation in atherosclerosis
    • Zhu S, Goldschmidt-Clermont PJ, Dong C. Inactivation of monocarboxylate transporter MCT3 by DNA methylation in atherosclerosis. Circulation. 2005;112:1353-61.
    • (2005) Circulation , vol.112 , pp. 1353-1361
    • Zhu, S.1    Goldschmidt-Clermont, P.J.2    Dong, C.3
  • 34
    • 7544231794 scopus 로고    scopus 로고
    • Intragenic DNA methylation alters chromatin structure and elongation efficiency in mammalian cells
    • Lorincz MC, Dickerson DR, Schmitt M, Groudine M. Intragenic DNA methylation alters chromatin structure and elongation efficiency in mammalian cells. Nat Struct Mol Biol. 2004;11:1068-75.
    • (2004) Nat Struct Mol Biol , vol.11 , pp. 1068-1075
    • Lorincz, M.C.1    Dickerson, D.R.2    Schmitt, M.3    Groudine, M.4
  • 35
    • 39549093550 scopus 로고    scopus 로고
    • An epigenetic role for noncoding RNAs and intragenic DNA methylation
    • Flanagan JM, Wild L. An epigenetic role for noncoding RNAs and intragenic DNA methylation. Genome Biol. 2007;8:307.
    • (2007) Genome Biol , vol.8 , pp. 307
    • Flanagan, J.M.1    Wild, L.2
  • 36
    • 0025138248 scopus 로고
    • Involvement of a NF-kappa B-like transcription factor in the activation of the interleukin-6 gene by inflammatory lymphokines
    • Shimizu H, Mitomo K, Watanabe T, Okamoto S, Yamamoto K. Involvement of a NF-kappa B-like transcription factor in the activation of the interleukin-6 gene by inflammatory lymphokines. Mol Cell Biol. 1990;10:561-8.
    • (1990) Mol Cell Biol , vol.10 , pp. 561-568
    • Shimizu, H.1    Mitomo, K.2    Watanabe, T.3    Okamoto, S.4    Yamamoto, K.5
  • 37
    • 19944431570 scopus 로고    scopus 로고
    • Arginine methyltransferase CARM1 is a promoter-specific regulator of NF-kappaBdependent gene expression
    • Covic M, Hassa PO, Saccani S, Buerki C, Meier NI, Lombardi C, et al. Arginine methyltransferase CARM1 is a promoter-specific regulator of NF-kappaBdependent gene expression. EMBO J. 2005;24:85-96.
    • (2005) EMBO J , vol.24 , pp. 85-96
    • Covic, M.1    Hassa, P.O.2    Saccani, S.3    Buerki, C.4    Meier, N.I.5    Lombardi, C.6
  • 38
    • 0344827206 scopus 로고    scopus 로고
    • Mutation of MEF2A in an inherited disorder with features of coronary artery disease
    • Wang L, Fan C, Topol SE, Topol EJ, Wang Q. Mutation of MEF2A in an inherited disorder with features of coronary artery disease. Science. 2003;302:1578-81.
    • (2003) Science , vol.302 , pp. 1578-1581
    • Wang, L.1    Fan, C.2    Topol, S.E.3    Topol, E.J.4    Wang, Q.5
  • 39
    • 84857961290 scopus 로고    scopus 로고
    • The effects of myocyte enhancer factor 2A gene on the proliferation, migration and phenotype of vascular smooth muscle cells
    • Zhao W, Zhao SP, Peng DQ. The effects of myocyte enhancer factor 2A gene on the proliferation, migration and phenotype of vascular smooth muscle cells. Cell Biochem Funct. 2012;30:108-13.
    • (2012) Cell Biochem Funct , vol.30 , pp. 108-113
    • Zhao, W.1    Zhao, S.P.2    Peng, D.Q.3
  • 40
    • 0033552883 scopus 로고    scopus 로고
    • Atherosclerosis - An inflammatory disease
    • Ross R. Atherosclerosis - an inflammatory disease. N Engl J Med. 1999;340:115-26.
    • (1999) N Engl J Med , vol.340 , pp. 115-126
    • Ross, R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.