-
1
-
-
0037340834
-
Real value prediction of solvent accessibility from amino acid sequence
-
Ahmad, S., Gromiha, M.M., and Sarai, A. (2003). Real value prediction of solvent accessibility from amino acid sequence. Proteins 50, 629-635.
-
(2003)
Proteins
, vol.50
, pp. 629-635
-
-
Ahmad, S.1
Gromiha, M.M.2
Sarai, A.3
-
2
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium
-
Ashburner, M., Ball, C.A., Blake, J.A., Botstein, D., Butler, H., Cherry, J.M., Davis, A.P., Dolinski, K., Dwight, S.S., Eppig, J.T., et al. (2000). Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet. 25, 25-29.
-
(2000)
Nat. Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
-
3
-
-
0032499801
-
Three-dimensional structure of the Stat3beta homodimer bound to DNA
-
Becker, S., Groner, B., and Müller, C.W. (1998). Three-dimensional structure of the Stat3beta homodimer bound to DNA. Nature 394, 145-151.
-
(1998)
Nature
, vol.394
, pp. 145-151
-
-
Becker, S.1
Groner, B.2
Müller, C.W.3
-
4
-
-
31544432283
-
Regulation of SUMOylation by reversible oxidation of SUMO conjugating enzymes
-
Bossis, G. and Melchior, F. (2006). Regulation of SUMOylation by reversible oxidation of SUMO conjugating enzymes. Mol. Cell 21, 349-357.
-
(2006)
Mol. Cell
, vol.21
, pp. 349-357
-
-
Bossis, G.1
Melchior, F.2
-
5
-
-
35748969097
-
Nitrosative stress treatment of E. coli targets distinct set of thiol-containing proteins
-
Brandes, N., Rinck, A., Leichert, L.I., and Jakob, U. (2007). Nitrosative stress treatment of E. coli targets distinct set of thiol-containing proteins. Mol. Microbiol. 66, 901-914.
-
(2007)
Mol. Microbiol.
, vol.66
, pp. 901-914
-
-
Brandes, N.1
Rinck, A.2
Leichert, L.I.3
Jakob, U.4
-
6
-
-
79954504166
-
Basic principles and emerging concepts in the redox control of transcription factors
-
Brigelius-Flohé, R. and Flohé, L. (2011). Basic principles and emerging concepts in the redox control of transcription factors. Antioxid. Redox Signal. 15, 2335-2381.
-
(2011)
Antioxid. Redox Signal.
, vol.15
, pp. 2335-2381
-
-
Brigelius-Flohé, R.1
Flohé, L.2
-
7
-
-
34548695863
-
Cysteine redox sensor in PKGIa enables oxidant-induced activation
-
Burgoyne, J.R., Madhani, M., Cuello, F., Charles, R.L., Brennan, J.P., Schröder, E., Browning, D.D., and Eaton, P. (2007). Cysteine redox sensor in PKGIa enables oxidant-induced activation. Science 317, 1393-1397.
-
(2007)
Science
, vol.317
, pp. 1393-1397
-
-
Burgoyne, J.R.1
Madhani, M.2
Cuello, F.3
Charles, R.L.4
Brennan, J.P.5
Schröder, E.6
Browning, D.D.7
Eaton, P.8
-
8
-
-
84897478666
-
Control of blood proteins by functional disulfide bonds
-
Butera, D., Cook, K.M., Chiu, J., Wong, J.W.H., and Hogg, P.J. (2014). Control of blood proteins by functional disulfide bonds. Blood 123, 2000-2007.
-
(2014)
Blood
, vol.123
, pp. 2000-2007
-
-
Butera, D.1
Cook, K.M.2
Chiu, J.3
Wong, J.W.H.4
Hogg, P.J.5
-
9
-
-
0042121261
-
POPS: A fast algorithm for solvent accessible surface areas at atomic and residue level
-
Cavallo, L., Kleinjung, J., and Fraternali, F. (2003). POPS: A fast algorithm for solvent accessible surface areas at atomic and residue level. Nucleic Acids Res. 31, 3364-3366.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3364-3366
-
-
Cavallo, L.1
Kleinjung, J.2
Fraternali, F.3
-
10
-
-
0031032679
-
A two-stage mechanism for the reductive unfolding of disulfide-containing proteins
-
Chang, J.Y. (1997). A two-stage mechanism for the reductive unfolding of disulfide-containing proteins. J. Biol. Chem. 272, 69-75.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 69-75
-
-
Chang, J.Y.1
-
11
-
-
0037110454
-
A thiol peroxidase is an H2O2 receptor and redox-transducer in gene activation
-
Delaunay, A., Pflieger, D., Barrault, M.B., Vinh, J., and Toledano, M.B. (2002). A thiol peroxidase is an H2O2 receptor and redox-transducer in gene activation. Cell 111, 471-481.
-
(2002)
Cell
, vol.111
, pp. 471-481
-
-
Delaunay, A.1
Pflieger, D.2
Barrault, M.B.3
Vinh, J.4
Toledano, M.B.5
-
12
-
-
84927922859
-
Enzymatic control of cysteinyl thiol switches in proteins
-
Deponte, M., and Lillig, C.H. (2015). Enzymatic control of cysteinyl thiol switches in proteins. Biol. Chem. 396, 401-413.
-
(2015)
Biol. Chem.
, vol.396
, pp. 401-413
-
-
Deponte, M.1
Lillig, C.H.2
-
13
-
-
78651320816
-
Phospho.ELM: A database of phosphorylation sites - Update 2011
-
Dinkel, H., Chica, C., Via, A., Gould, C.M., Jensen, L.J., Gibson, T.J., and Diella, F. (2011). Phospho.ELM: a database of phosphorylation sites - update 2011. Nucleic Acids Res. 39, D261-D267.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. D261-D267
-
-
Dinkel, H.1
Chica, C.2
Via, A.3
Gould, C.M.4
Jensen, L.J.5
Gibson, T.J.6
Diella, F.7
-
14
-
-
84913594397
-
Genome editing. The new frontier of genome engineering with CRISPR-Cas9
-
Doudna, J.A. and Charpentier, E. (2014). Genome editing. The new frontier of genome engineering with CRISPR-Cas9. Science 346, 1258096.
-
(2014)
Science
, vol.346
, pp. 1258096
-
-
Doudna, J.A.1
Charpentier, E.2
-
15
-
-
50149109183
-
Bacterial species exhibit diversity in their mechanisms and capacity for protein disulfide bond formation
-
Dutton, R.J., Boyd, D., Berkmen, M., and Beckwith, J. (2008). Bacterial species exhibit diversity in their mechanisms and capacity for protein disulfide bond formation. Proc. Natl. Acad. Sci. USA 105, 11933-11938.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 11933-11938
-
-
Dutton, R.J.1
Boyd, D.2
Berkmen, M.3
Beckwith, J.4
-
16
-
-
79954542342
-
Factors affecting protein thiol reactivity and specificity in peroxide reduction
-
Ferrer-Sueta, G., Manta, B., Botti, H., Radi, R., Trujillo, M., and Denicola, A. (2011). Factors affecting protein thiol reactivity and specificity in peroxide reduction. Chem. Res. Toxicol. 24, 434-450.
-
(2011)
Chem. Res. Toxicol.
, vol.24
, pp. 434-450
-
-
Ferrer-Sueta, G.1
Manta, B.2
Botti, H.3
Radi, R.4
Trujillo, M.5
Denicola, A.6
-
17
-
-
84890031660
-
The mitochondrial disulfide relay system: Roles in oxidative protein folding and beyond
-
Fischer, M., and Riemer, J. (2013). The mitochondrial disulfide relay system: roles in oxidative protein folding and beyond. Int. J.Cell Biol. 2013, 742923.
-
(2013)
Int. J.Cell Biol.
, vol.2013
, pp. 742923
-
-
Fischer, M.1
Riemer, J.2
-
18
-
-
79952582563
-
Thiol peroxidases mediate specific genome-wide regulation of gene expression in response to hydrogen peroxide
-
Fomenko, D.E., Koc, A., Agisheva, N., Jacobsen, M., Kaya, A., Malinouski, M., Rutherford, J.C., Siu, K.-L., Jin, D.-Y., Winge, D.R., et al. (2011). Thiol peroxidases mediate specific genome-wide regulation of gene expression in response to hydrogen peroxide. Proc. Natl. Acad. Sci. USA 108, 2729-2734.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 2729-2734
-
-
Fomenko, D.E.1
Koc, A.2
Agisheva, N.3
Jacobsen, M.4
Kaya, A.5
Malinouski, M.6
Rutherford, J.C.7
Siu, K.-L.8
Jin, D.-Y.9
Winge, D.R.10
-
19
-
-
84884179284
-
The redox proteome
-
Go, Y.-M., and Jones, D.P. (2013). The redox proteome. J. Biol. Chem. 288, 26512-26520.
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 26512-26520
-
-
Go, Y.-M.1
Jones, D.P.2
-
20
-
-
84902281301
-
Thiol-based redox switches
-
Groitl, B. and Jakob, U. (2014). Thiol-based redox switches. Biochim. Biophys. Acta 1844, 1335-1343.
-
(2014)
Biochim. Biophys. Acta
, vol.1844
, pp. 1335-1343
-
-
Groitl, B.1
Jakob, U.2
-
21
-
-
80053215531
-
Differential oxidant tolerance determined by the key transcription factor Yap1 is controlled by levels of the Yap1-binding protein, Ybp1
-
Gulshan, K., Lee, S.S., and Moye-Rowley, W.S. (2011). Differential oxidant tolerance determined by the key transcription factor Yap1 is controlled by levels of the Yap1-binding protein, Ybp1. J. Biol. Chem. 286, 34071-34081.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 34071-34081
-
-
Gulshan, K.1
Lee, S.S.2
Moye-Rowley, W.S.3
-
22
-
-
0037165630
-
Interaction with substrate sensitises caspase-3 to inactivation by hydrogen peroxide
-
Hampton, M.B., Stamenkovic, I., and Winterbourn, C.C. (2002). Interaction with substrate sensitises caspase-3 to inactivation by hydrogen peroxide. FEBS Lett. 517, 229-232.
-
(2002)
FEBS Lett.
, vol.517
, pp. 229-232
-
-
Hampton, M.B.1
Stamenkovic, I.2
Winterbourn, C.C.3
-
23
-
-
84902270478
-
Disulfide bond formation in prokaryotes: History, diversity and design
-
Hatahet, F., Boyd, D., and Beckwith, J. (2014). Disulfide bond formation in prokaryotes: history, diversity and design. Biochim. Biophys. Acta 1844, 1402-1414.
-
(2014)
Biochim. Biophys. Acta
, vol.1844
, pp. 1402-1414
-
-
Hatahet, F.1
Boyd, D.2
Beckwith, J.3
-
24
-
-
84927917880
-
Cytosolic thiol switches regulating basic cellular functions: GAPDH as an information hub?
-
Hildebrandt, T., Knuesting, J., Berndt, C., Morgan, B., Scheibe, R. (2015). Cytosolic thiol switches regulating basic cellular functions: GAPDH as an information hub? Biol. Chem. 396, 523-537.
-
(2015)
Biol. Chem.
, vol.396
, pp. 523-537
-
-
Hildebrandt, T.1
Knuesting, J.2
Berndt, C.3
Morgan, B.4
Scheibe, R.5
-
25
-
-
0000962563
-
Three-dimensional structure of Escherichia coli thioredoxin-S2 to 2.8 A resolution
-
Holmgren, A., Söderberg, B.O., Eklund, H., and Brändén, C.I. (1975). Three-dimensional structure of Escherichia coli thioredoxin-S2 to 2.8 A resolution. Proc. Natl. Acad. Sci. USA 72, 2305-2309.
-
(1975)
Proc. Natl. Acad. Sci. USA
, vol.72
, pp. 2305-2309
-
-
Holmgren, A.1
Söderberg, B.O.2
Eklund, H.3
Brändén, C.I.4
-
26
-
-
0021810617
-
Omeprazole, a specific inhibitor of gastric (H+-K+)-ATPase, is a H+-activated oxidizing agent of sulfhydryl groups
-
Im, W.B., Sih, J.C., Blakeman, D.P., and McGrath, J.P. (1985). Omeprazole, a specific inhibitor of gastric (H+-K+)-ATPase, is a H+-activated oxidizing agent of sulfhydryl groups. J. Biol. Chem. 260, 4591-4597.
-
(1985)
J. Biol. Chem.
, vol.260
, pp. 4591-4597
-
-
Im, W.B.1
Sih, J.C.2
Blakeman, D.P.3
McGrath, J.P.4
-
27
-
-
84866357593
-
Peroxiredoxin 1 functions as a signal peroxidase to receive, transduce, and transmit peroxide signals in mammalian cells
-
Jarvis, R.M., Hughes, S.M., and Ledgerwood, E.C. (2012). Peroxiredoxin 1 functions as a signal peroxidase to receive, transduce, and transmit peroxide signals in mammalian cells. Free Radic. Biol. Med. 53, 1522-1530.
-
(2012)
Free Radic. Biol. Med.
, vol.53
, pp. 1522-1530
-
-
Jarvis, R.M.1
Hughes, S.M.2
Ledgerwood, E.C.3
-
28
-
-
84908344979
-
Target-selective protein s-nitrosylation by sequence motif recognition
-
Jia, J., Arif, A., Terenzi, F., Willard, B., Plow, E.F., Hazen, S.L., and Fox, P.L. (2014). Target-selective protein s-nitrosylation by sequence motif recognition. Cell 159, 623-634.
-
(2014)
Cell
, vol.159
, pp. 623-634
-
-
Jia, J.1
Arif, A.2
Terenzi, F.3
Willard, B.4
Plow, E.F.5
Hazen, S.L.6
Fox, P.L.7
-
29
-
-
77956318615
-
Mechanisms of oxidative protein folding in the bacterial cell envelope
-
Kadokura, H. and Beckwith, J. (2010). Mechanisms of oxidative protein folding in the bacterial cell envelope. Antioxid. Redox Signal. 13, 1231-1246.
-
(2010)
Antioxid. Redox Signal.
, vol.13
, pp. 1231-1246
-
-
Kadokura, H.1
Beckwith, J.2
-
30
-
-
9344259718
-
Reversible oxidation and inactivation of the tumor suppressor PTEN in cells stimulated with peptide growth factors
-
Kwon, J., Lee, S.-R., Yang, K.-S., Ahn, Y., Kim, Y.J., Stadtman, E.R., and Rhee, S.G. (2004). Reversible oxidation and inactivation of the tumor suppressor PTEN in cells stimulated with peptide growth factors. Proc. Natl. Acad. Sci. USA 101, 16419-16424.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 16419-16424
-
-
Kwon, J.1
Lee, S.-R.2
Yang, K.-S.3
Ahn, Y.4
Kim, Y.J.5
Stadtman, E.R.6
Rhee, S.G.7
-
31
-
-
84881499141
-
MsrB1 and MICALs regulate actin assembly and macrophage function via reversible stereoselective methionine oxidation
-
Lee, B.C., Péterfi, Z., Hoffmann, F.W., Moore, R.E., Kaya, A., Avanesov, A., Tarrago, L., Zhou, Y., Weerapana, E., Fomenko, D.E., et al. (2013). MsrB1 and MICALs regulate actin assembly and macrophage function via reversible stereoselective methionine oxidation. Mol. Cell 51, 397-404.
-
(2013)
Mol. Cell
, vol.51
, pp. 397-404
-
-
Lee, B.C.1
Péterfi, Z.2
Hoffmann, F.W.3
Moore, R.E.4
Kaya, A.5
Avanesov, A.6
Tarrago, L.7
Zhou, Y.8
Weerapana, E.9
Fomenko, D.E.10
-
32
-
-
14044257165
-
Protein thiol modifications visualized in vivo
-
Leichert, L.I. and Jakob, U. (2004). Protein thiol modifications visualized in vivo. PLoS Biol. 2, e333.
-
(2004)
PLoS Biol.
, vol.2
, pp. e333
-
-
Leichert, L.I.1
Jakob, U.2
-
33
-
-
33745815327
-
Global methods to monitor the thiol-disulfide state of proteins in vivo
-
Leichert, L.I. and Jakob, U. (2006). Global methods to monitor the thiol-disulfide state of proteins in vivo. Antioxid. Redox Signal. 8, 763-772.
-
(2006)
Antioxid. Redox Signal.
, vol.8
, pp. 763-772
-
-
Leichert, L.I.1
Jakob, U.2
-
34
-
-
46149125288
-
Quantifying changes in the thiol redox proteome upon oxidative stress in vivo
-
Leichert, L.I., Gehrke, F., Gudiseva, H.V., Blackwell, T., Ilbert, M., Walker, A.K., Strahler, J.R., Andrews, P.C., and Jakob, U. (2008). Quantifying changes in the thiol redox proteome upon oxidative stress in vivo. Proc. Natl. Acad. Sci. USA 105, 8197-8202.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 8197-8202
-
-
Leichert, L.I.1
Gehrke, F.2
Gudiseva, H.V.3
Blackwell, T.4
Ilbert, M.5
Walker, A.K.6
Strahler, J.R.7
Andrews, P.C.8
Jakob, U.9
-
35
-
-
33845954438
-
Elevated activity of STAT3C due to higher DNA binding affinity of phosphotyrosine dimer rather than covalent dimer formation
-
Li, L. and Shaw, P.E. (2006). Elevated activity of STAT3C due to higher DNA binding affinity of phosphotyrosine dimer rather than covalent dimer formation. J. Biol. Chem. 281, 33172-33181.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 33172-33181
-
-
Li, L.1
Shaw, P.E.2
-
36
-
-
78049300452
-
Modulation of gene expression and tumor cell growth by redox modification of STAT3
-
Li, L., Cheung, S.H., Evans, E.L., and Shaw, P.E. (2010). Modulation of gene expression and tumor cell growth by redox modification of STAT3. Cancer Res 70, 8222-8232.
-
(2010)
Cancer Res
, vol.70
, pp. 8222-8232
-
-
Li, L.1
Cheung, S.H.2
Evans, E.L.3
Shaw, P.E.4
-
37
-
-
84864120983
-
Quantitative redox proteomics: The NOxICAT method
-
Lindemann, C. and Leichert, L.I. (2012). Quantitative redox proteomics: the NOxICAT method. Methods Mol. Biol. 893, 387-403.
-
(2012)
Methods Mol. Biol.
, vol.893
, pp. 387-403
-
-
Lindemann, C.1
Leichert, L.I.2
-
38
-
-
84880079480
-
Redox proteomics uncovers peroxynitrite-sensitive proteins that help Escherichia coli to overcome nitrosative stress
-
Lindemann, C., Lupilova, N., Müller, A., Warscheid, B., Meyer, H.E., Kuhlmann, K., Eisenacher, M. and Leichert, L.I. (2013). Redox proteomics uncovers peroxynitrite-sensitive proteins that help Escherichia coli to overcome nitrosative stress. J. Biol. Chem. 288, 19698-19714.
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 19698-19714
-
-
Lindemann, C.1
Lupilova, N.2
Müller, A.3
Warscheid, B.4
Meyer, H.E.5
Kuhlmann, K.6
Eisenacher, M.7
Leichert, L.I.8
-
39
-
-
84864883458
-
Preliminary crystallographic analysis of glyceraldehyde-3-phosphate dehydrogenase 3 from Saccharomyces cerevisiae
-
Liu, Q., Wang, H., Liu, H., Teng, M., and Li, X. (2012). Preliminary crystallographic analysis of glyceraldehyde-3-phosphate dehydrogenase 3 from Saccharomyces cerevisiae. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 68, 978-980.
-
(2012)
Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun.
, vol.68
, pp. 978-980
-
-
Liu, Q.1
Wang, H.2
Liu, H.3
Teng, M.4
Li, X.5
-
40
-
-
84876523828
-
DbPTM 3.0: An informative resource for investigating substrate site specificity and functional association of protein post-translational modifications
-
Lu, C.-T., Huang, K.-Y., Su, M.-G., Lee, T.-Y., Bretaña, N.A., Chang, W.-C., Chen, Y.-J., Chen, Y.-J., and Huang, H.-D. (2013). DbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modifications. Nucleic Acids Res. 41, D295-D305.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D295-D305
-
-
Lu, C.-T.1
Huang, K.-Y.2
Su, M.-G.3
Lee, T.-Y.4
Bretaña, N.A.5
Chang, W.-C.6
Chen, Y.-J.7
Chen, Y.-J.8
Huang, H.-D.9
-
41
-
-
14344251523
-
Kinetics and mechanism of the reaction of cysteine and hydrogen peroxide in aqueous solution
-
Luo, D., Smith, S.W., and Anderson, B.D. (2005). Kinetics and mechanism of the reaction of cysteine and hydrogen peroxide in aqueous solution. J. Pharm. Sci. 94, 304-316.
-
(2005)
J. Pharm. Sci.
, vol.94
, pp. 304-316
-
-
Luo, D.1
Smith, S.W.2
Anderson, B.D.3
-
42
-
-
84862924317
-
Characterization of the redox activity and disulfide bond formation in apurinic/apyrimidinic endonuclease
-
Luo, M., Zhang, J., He, H., Su, D., Chen, Q., Gross, M.L., Kelley, M.R., and Georgiadis, M.M. (2012). Characterization of the redox activity and disulfide bond formation in apurinic/apyrimidinic endonuclease. Biochemistry 51, 695-705.
-
(2012)
Biochemistry
, vol.51
, pp. 695-705
-
-
Luo, M.1
Zhang, J.2
He, H.3
Su, D.4
Chen, Q.5
Gross, M.L.6
Kelley, M.R.7
Georgiadis, M.M.8
-
43
-
-
79955430653
-
Thioredoxin mediates oxidation-dependent phosphorylation of CRMP2 and growth cone collapse
-
Morinaka, A., Yamada, M., Itofusa, R., Funato, Y., Yoshimura, Y., Nakamura, F., Yoshimura, T., Kaibuchi, K., Goshima, Y., Hoshino, M., et al. (2011). Thioredoxin mediates oxidation-dependent phosphorylation of CRMP2 and growth cone collapse. Sci. Signal. 4, ra26.
-
(2011)
Sci. Signal.
, vol.4
, pp. ra26
-
-
Morinaka, A.1
Yamada, M.2
Itofusa, R.3
Funato, Y.4
Yoshimura, Y.5
Nakamura, F.6
Yoshimura, T.7
Kaibuchi, K.8
Goshima, Y.9
Hoshino, M.10
-
44
-
-
84875712387
-
Kinetics and mechanisms of thiol-disulfide exchange covering direct substitution and thiol oxidation-mediated pathways
-
Nagy, P. (2013). Kinetics and mechanisms of thiol-disulfide exchange covering direct substitution and thiol oxidation-mediated pathways. Antioxid. Redox Signal. 18, 1623-1641.
-
(2013)
Antioxid. Redox Signal.
, vol.18
, pp. 1623-1641
-
-
Nagy, P.1
-
45
-
-
84880613321
-
Forming disulfides in the endoplasmic reticulum
-
Oka, O.B.V. and Bulleid, N.J. (2013). Forming disulfides in the endoplasmic reticulum. Biochim. Biophys. Acta 1833, 2425-2429.
-
(2013)
Biochim. Biophys. Acta
, vol.1833
, pp. 2425-2429
-
-
Oka, O.B.V.1
Bulleid, N.J.2
-
46
-
-
0038655553
-
Cysteine 64 of Ref-1 is not essential for redox regulation of AP-1 DNA binding
-
Ordway, J.M., Eberhart, D., and Curran, T. (2003). Cysteine 64 of Ref-1 is not essential for redox regulation of AP-1 DNA binding. Mol. Cell. Biol. 23, 4257-4266.
-
(2003)
Mol. Cell. Biol.
, vol.23
, pp. 4257-4266
-
-
Ordway, J.M.1
Eberhart, D.2
Curran, T.3
-
47
-
-
0034781061
-
Absolute rate constants for the reaction of hypochlorous acid with protein side chains and peptide bonds
-
Pattison, D.I., and Davies, M.J. (2001). Absolute rate constants for the reaction of hypochlorous acid with protein side chains and peptide bonds. Chem. Res. Toxicol. 14, 1453-1464.
-
(2001)
Chem. Res. Toxicol.
, vol.14
, pp. 1453-1464
-
-
Pattison, D.I.1
Davies, M.J.2
-
48
-
-
84928075462
-
A proton relay enhances H2O2 sensitivity of GAPDH to facilitate metabolic adaptation
-
Peralta, D., Bronowska, A.K., Morgan, B., Dóka, É., Van Laer, K., Nagy, P., Gräter, F., and Dick, T.P. (2015). A proton relay enhances H2O2 sensitivity of GAPDH to facilitate metabolic adaptation. Nat. Chem. Biol. 11, 156-163.
-
(2015)
Nat. Chem. Biol.
, vol.11
, pp. 156-163
-
-
Peralta, D.1
Bronowska, A.K.2
Morgan, B.3
Dóka É.4
Van Laer, K.5
Nagy, P.6
Gräter, F.7
Dick, T.P.8
-
49
-
-
0035960648
-
Glutathionylation of the p50 subunit of NF-κB: A mechanism for redox-induced inhibition of DNA binding
-
Pineda-Molina, E., Klatt, P., Vázquez, J., Marina, A., García de Lacoba, M., Pérez-Sala, D., and Lamas, S. (2001). Glutathionylation of the p50 subunit of NF-κB: a mechanism for redox-induced inhibition of DNA binding. Biochemistry 40, 14134-14142.
-
(2001)
Biochemistry
, vol.40
, pp. 14134-14142
-
-
Pineda-Molina, E.1
Klatt, P.2
Vázquez, J.3
Marina, A.4
García De Lacoba, M.5
Pérez-Sala, D.6
Lamas, S.7
-
50
-
-
84856701189
-
Single atom substitution in mouse protein kinase G eliminates oxidant sensing to cause hypertension
-
Prysyazhna, O., Rudyk, O., and Eaton, P. (2012). Single atom substitution in mouse protein kinase G eliminates oxidant sensing to cause hypertension. Nat. Med. 18, 286-290.
-
(2012)
Nat. Med.
, vol.18
, pp. 286-290
-
-
Prysyazhna, O.1
Rudyk, O.2
Eaton, P.3
-
51
-
-
0025730414
-
Peroxynitrite oxidation of sulfhydryls. The cytotoxic potential of superoxide and nitric oxide
-
Radi, R., Beckman, J.S., Bush, K.M., and Freeman, B.A. (1991). Peroxynitrite oxidation of sulfhydryls. The cytotoxic potential of superoxide and nitric oxide. J. Biol. Chem. 266, 4244-4250.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 4244-4250
-
-
Radi, R.1
Beckman, J.S.2
Bush, K.M.3
Freeman, B.A.4
-
52
-
-
0031304244
-
The structure and functions of the HAP1/Ref-1 protein
-
Rothwell, D.G., Barzilay, G., Gorman, M., Morera, S., Freemont, P., and Hickson, I.D. (1997). The structure and functions of the HAP1/Ref-1 protein. Oncol. Res. 9, 275-280.
-
(1997)
Oncol. Res.
, vol.9
, pp. 275-280
-
-
Rothwell, D.G.1
Barzilay, G.2
Gorman, M.3
Morera, S.4
Freemont, P.5
Hickson, I.D.6
-
53
-
-
39549088485
-
Prediction of reversibly oxidized protein cysteine thiols using protein structure properties
-
Sanchez, R., Riddle, M., Woo, J., and Momand, J. (2008). Prediction of reversibly oxidized protein cysteine thiols using protein structure properties. Protein Sci 17, 473-481.
-
(2008)
Protein Sci
, vol.17
, pp. 473-481
-
-
Sanchez, R.1
Riddle, M.2
Woo, J.3
Momand, J.4
-
54
-
-
11944271430
-
Solubility as a function of protein structure and solvent components
-
Schein, C.H. (1990). Solubility as a function of protein structure and solvent components. Biotechnology (N.Y.) 8, 308-317.
-
(1990)
Biotechnology (N.Y.)
, vol.8
, pp. 308-317
-
-
Schein, C.H.1
-
55
-
-
0343953384
-
Crystal structure of decameric 2-Cys peroxiredoxin from human erythrocytes at 1.7 Å resolution
-
Schröder, E., Littlechild, J.A., Lebedev, A.A., Errington, N., Vagin, A.A., and Isupov, M.N. (2000). Crystal structure of decameric 2-Cys peroxiredoxin from human erythrocytes at 1.7 Å resolution. Structure 8, 605-615.
-
(2000)
Structure
, vol.8
, pp. 605-615
-
-
Schröder, E.1
Littlechild, J.A.2
Lebedev, A.A.3
Errington, N.4
Vagin, A.A.5
Isupov, M.N.6
-
56
-
-
84924921673
-
Peroxiredoxin-2 and STAT3 form a redox relay for H2O2 signaling
-
Sobotta, M.C., Liou, W., Stöcker, S., Talwar, D., Oehler, M., Ruppert, T., Scharf, A.N.D., and Dick, T.P. (2015). Peroxiredoxin-2 and STAT3 form a redox relay for H2O2 signaling. Nat. Chem. Biol. 11, 64-70.
-
(2015)
Nat. Chem. Biol.
, vol.11
, pp. 64-70
-
-
Sobotta, M.C.1
Liou, W.2
Stöcker, S.3
Talwar, D.4
Oehler, M.5
Ruppert, T.6
Scharf, A.N.D.7
Dick, T.P.8
-
57
-
-
84867313408
-
RedoxDB - A curated database for experimentally verified protein oxidative modification
-
Sun, M.-A., Wang, Y., Cheng, H., Zhang, Q., Ge, W., and Guo, D. (2012). RedoxDB - a curated database for experimentally verified protein oxidative modification. Bioinformatics 28, 2551-2552.
-
(2012)
Bioinformatics
, vol.28
, pp. 2551-2552
-
-
Sun, M.-A.1
Wang, Y.2
Cheng, H.3
Zhang, Q.4
Ge, W.5
Guo, D.6
-
58
-
-
80054937592
-
Computational prediction of eukaryotic phosphorylation sites
-
Trost, B. and Kusalik, A. (2011). Computational prediction of eukaryotic phosphorylation sites. Bioinformatics 27, 2927-2935.
-
(2011)
Bioinformatics
, vol.27
, pp. 2927-2935
-
-
Trost, B.1
Kusalik, A.2
-
59
-
-
84891783174
-
Activities at the Universal Protein Resource (UniProt)
-
UniProt Consortium (2014). Activities at the Universal Protein Resource (UniProt). Nucleic Acids Res. 42, D191-D198.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D191-D198
-
-
UniProt Consortium1
-
60
-
-
0042733228
-
Ybp1 is required for the hydrogen peroxide-induced oxidation of the Yap1 transcription factor
-
Veal, E.A., Ross, S.J., Malakasi, P., Peacock, E., and Morgan, B.A. (2003). Ybp1 is required for the hydrogen peroxide-induced oxidation of the Yap1 transcription factor. J. Biol. Chem. 278, 30896-30904.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 30896-30904
-
-
Veal, E.A.1
Ross, S.J.2
Malakasi, P.3
Peacock, E.4
Morgan, B.A.5
-
61
-
-
0027324056
-
Identification of residues in the human DNA repair enzyme HAP1 (Ref-1) that are essential for redox regulation of Jun DNA binding
-
Walker, L.J., Robson, C.N., Black, E., Gillespie, D., and Hickson, I.D. (1993). Identification of residues in the human DNA repair enzyme HAP1 (Ref-1) that are essential for redox regulation of Jun DNA binding. Mol. Cell. Biol. 13, 5370-5376.
-
(1993)
Mol. Cell. Biol.
, vol.13
, pp. 5370-5376
-
-
Walker, L.J.1
Robson, C.N.2
Black, E.3
Gillespie, D.4
Hickson, I.D.5
-
62
-
-
84894470051
-
Leukocyte extravasation and vascular permeability are each controlled in vivo by different tyrosine residues of VE-cadherin
-
Wessel, F., Winderlich, M., Holm, M., Frye, M., Rivera-Galdos, R., Vockel, M., Linnepe, R., Ipe, U., Stadtmann, A., Zarbock, A., et al. (2014). Leukocyte extravasation and vascular permeability are each controlled in vivo by different tyrosine residues of VE-cadherin. Nat. Immunol. 15, 223-230.
-
(2014)
Nat. Immunol.
, vol.15
, pp. 223-230
-
-
Wessel, F.1
Winderlich, M.2
Holm, M.3
Frye, M.4
Rivera-Galdos, R.5
Vockel, M.6
Linnepe, R.7
Ipe, U.8
Stadtmann, A.9
Zarbock, A.10
-
63
-
-
42249088093
-
Reconciling the chemistry and biology of reactive oxygen species
-
Winterbourn, C.C. (2008). Reconciling the chemistry and biology of reactive oxygen species. Nat. Chem. Biol. 4, 278-286.
-
(2008)
Nat. Chem. Biol.
, vol.4
, pp. 278-286
-
-
Winterbourn, C.C.1
-
64
-
-
84919363563
-
The SNO/SOH TMT strategy for combinatorial analysis of reversible cysteine oxidations
-
Wojdyla, K., Williamson, J., Roepstorff, P., and Rogowska-Wrzesinska, A. (2015). The SNO/SOH TMT strategy for combinatorial analysis of reversible cysteine oxidations. J. Proteomics 113, 415-434.
-
(2015)
J. Proteomics
, vol.113
, pp. 415-434
-
-
Wojdyla, K.1
Williamson, J.2
Roepstorff, P.3
Rogowska-Wrzesinska, A.4
-
65
-
-
38049185042
-
Molecular basis of the redox regulation of SUMO proteases: A protective mechanism of intermolecular disulfide linkage against irreversible sulfhydryl oxidation
-
Xu, Z., Lam, L.S.M., Lam, L.H., Chau, S.F., Ng, T.B., and Au, S.W.N. (2008). Molecular basis of the redox regulation of SUMO proteases: a protective mechanism of intermolecular disulfide linkage against irreversible sulfhydryl oxidation. FASEB J. 22, 127-137.
-
(2008)
FASEB J.
, vol.22
, pp. 127-137
-
-
Xu, Z.1
Lam, L.S.M.2
Lam, L.H.3
Chau, S.F.4
Ng, T.B.5
Au, S.W.N.6
-
66
-
-
78651317205
-
A summary of computational resources for protein phosphorylation
-
Xue, Y., Gao, X., Cao, J., Liu, Z., Jin, C., Wen, L., Yao, X., and Ren, J. (2010). A summary of computational resources for protein phosphorylation. Curr. Protein Pept. Sci. 11, 485-496.
-
(2010)
Curr. Protein Pept. Sci.
, vol.11
, pp. 485-496
-
-
Xue, Y.1
Gao, X.2
Cao, J.3
Liu, Z.4
Jin, C.5
Wen, L.6
Yao, X.7
Ren, J.8
-
67
-
-
68049143439
-
On the relation between residue flexibility and local solvent accessibility in proteins
-
Zhang, H., Zhang, T., Chen, K., Shen, S., Ruan, J., and Kurgan, L. (2009). On the relation between residue flexibility and local solvent accessibility in proteins. Proteins 76, 617-636.
-
(2009)
Proteins
, vol.76
, pp. 617-636
-
-
Zhang, H.1
Zhang, T.2
Chen, K.3
Shen, S.4
Ruan, J.5
Kurgan, L.6
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