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Volumn 27, Issue 21, 2011, Pages 2927-2935

Computational prediction of eukaryotic phosphorylation sites

Author keywords

[No Author keywords available]

Indexed keywords

EUKARYOTA;

EID: 80054937592     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr525     Document Type: Review
Times cited : (138)

References (77)
  • 1
    • 77951560949 scopus 로고    scopus 로고
    • AMS 3, 0: prediction of post-translational modifications
    • Basu,S. and Plewczyński,D. (2010) AMS 3.0: prediction of post-translational modifications. BMC Bioinformatics, 11, 210.
    • (2010) BMC Bioinformatics , vol.11 , pp. 210
    • Basu, S.1    Plewczyński, D.2
  • 2
    • 0345874725 scopus 로고    scopus 로고
    • CONREAL: conserved regulatory elements anchored alignment algorithm for identification of transcription factor binding sites by phylogenetic footprinting
    • Berezikov,E. et al. (2004) CONREAL: conserved regulatory elements anchored alignment algorithm for identification of transcription factor binding sites by phylogenetic footprinting. Genome Res., 14, 170-178.
    • (2004) Genome Res , vol.14 , pp. 170-178
    • Berezikov, E.1
  • 3
    • 0842301301 scopus 로고    scopus 로고
    • Reduced bio basis function neural network for identification of protein phosphorylation sites: comparison with pattern recognition algorithms
    • Berry,E.A. et al. (2004) Reduced bio basis function neural network for identification of protein phosphorylation sites: comparison with pattern recognition algorithms. Comput. Biol. Chem., 28, 75-85.
    • (2004) Comput. Biol. Chem. , vol.28 , pp. 75-85
    • Berry, E.A.1
  • 4
    • 77952464216 scopus 로고    scopus 로고
    • Machine learning approach to predict protein phosphorylation sites by incorporating evolutionary information
    • Biswas,A.K. et al. (2010) Machine learning approach to predict protein phosphorylation sites by incorporating evolutionary information. BMC Bioinformatics, 11, 273.
    • (2010) BMC Bioinformatics , vol.11 , pp. 273
    • Biswas, A.K.1
  • 5
    • 0031832053 scopus 로고    scopus 로고
    • PhosphoBase: a database of phosphorylation sites
    • Blom,N. et al. (1998) PhosphoBase: a database of phosphorylation sites. Nucleic Acids Res., 26, 382-386.
    • (1998) Nucleic Acids Res , vol.26 , pp. 382-386
    • Blom, N.1
  • 6
    • 0033579464 scopus 로고    scopus 로고
    • Sequence and structure-based prediction of eukaryotic protein phosphorylation sites
    • Blom,N. et al. (1999) Sequence and structure-based prediction of eukaryotic protein phosphorylation sites. J. Mol. Biol., 294, 1351-1362.
    • (1999) J. Mol. Biol. , vol.294 , pp. 1351-1362
    • Blom, N.1
  • 7
    • 2942564430 scopus 로고    scopus 로고
    • Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence
    • Blom,N. et al. (2004) Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence. Proteomics, 4, 1633-1649.
    • (2004) Proteomics , vol.4 , pp. 1633-1649
    • Blom, N.1
  • 8
    • 67649213067 scopus 로고    scopus 로고
    • Phosphopeptide fragmentation and analysis by mass spectrometry
    • Boersema,P.J. et al. (2009) Phosphopeptide fragmentation and analysis by mass spectrometry. J. Mass Spectrom., 44, 861-878.
    • (2009) J. Mass Spectrom. , vol.44 , pp. 861-878
    • Boersema, P.J.1
  • 9
    • 0037422596 scopus 로고    scopus 로고
    • Structural basis and prediction of substrate specificity in protein serine/threonine kinases
    • Brinkworth,R.I. et al. (2003) Structural basis and prediction of substrate specificity in protein serine/threonine kinases. Proc. Natl Acad. Sci. USA, 100, 74-79.
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 74-79
    • Brinkworth, R.I.1
  • 10
    • 77955626424 scopus 로고    scopus 로고
    • Insulin receptor substrate 1 regulates the cellular differentiation and the matrix metallopeptidase expression of preosteoblastic cells
    • Bu,Y.-H. et al. (2010) Insulin receptor substrate 1 regulates the cellular differentiation and the matrix metallopeptidase expression of preosteoblastic cells. J. Endocrinol., 206, 271-277.
    • (2010) J. Endocrinol. , vol.206 , pp. 271-277
    • Bu, Y.-H.1
  • 11
    • 0346733329 scopus 로고    scopus 로고
    • Are protein-protein interfaces more conserved in sequence than the rest of the protein surface?
    • Caffrey,D.R. et al. (2004) Are protein-protein interfaces more conserved in sequence than the rest of the protein surface? Protein Sci., 13, 190-202.
    • (2004) Protein Sci , vol.13 , pp. 190-202
    • Caffrey, D.R.1
  • 12
    • 9144253940 scopus 로고    scopus 로고
    • Arabidopsis kinome: after the casting
    • Champion,A. et al. (2004) Arabidopsis kinome: after the casting. Funct. Integr. Genomics, 4, 163-187.
    • (2004) Funct. Integr. Genomics , vol.4 , pp. 163-187
    • Champion, A.1
  • 13
    • 57249105125 scopus 로고    scopus 로고
    • Prediction of kinase-specific phosphorylation sites using conditional random fields
    • Dang,T.H. et al. (2008) Prediction of kinase-specific phosphorylation sites using conditional random fields. Bioinformatics, 24, 2857-2864.
    • (2008) Bioinformatics , vol.24 , pp. 2857-2864
    • Dang, T.H.1
  • 15
    • 38549092088 scopus 로고    scopus 로고
    • Phospho, ELM: a database of phosphorylation sites-update 2008
    • Diella,F. et al. (2008) Phospho.ELM: a database of phosphorylation sites-update 2008. Nucleic Acids Res., 36, D240-D244.
    • (2008) Nucleic Acids Res , vol.36
    • Diella, F.1
  • 16
    • 40749096784 scopus 로고    scopus 로고
    • Evidence for a minimal eukaryotic phosphoproteome?
    • Diks,S.H. et al. (2007) Evidence for a minimal eukaryotic phosphoproteome? PLoS One, 2, e777.
    • (2007) PLoS One , vol.2
    • Diks, S.H.1
  • 17
    • 78651320816 scopus 로고    scopus 로고
    • Phospho. ELM: a database of phosphorylation sites-update 2011
    • Dinkel,H. et al. (2011) Phospho.ELM: a database of phosphorylation sites-update 2011. Nucleic Acids Res., 39, D261-D267.
    • (2011) Nucleic Acids Res , vol.39
    • Dinkel, H.1
  • 18
    • 0037188377 scopus 로고    scopus 로고
    • Intrinsic disorder and protein function
    • Dunker,A.K. et al. (2002) Intrinsic disorder and protein function. Biochemistry, 41, 6573-6582.
    • (2002) Biochemistry , vol.41 , pp. 6573-6582
    • Dunker, A.K.1
  • 19
    • 65849416300 scopus 로고    scopus 로고
    • Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins
    • Durek,P. et al. (2009) Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins. BMC Bioinformatics, 10, 117.
    • (2009) BMC Bioinformatics , vol.10 , pp. 117
    • Durek, P.1
  • 20
    • 75549090366 scopus 로고    scopus 로고
    • PhosPhAt: the Arabidopsis thaliana phosphorylation site database
    • Durek,P. et al. (2010) PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update. Nucleic Acids Res., 38, D828-D834.
    • (2010) An update. Nucleic Acids Res. , vol.38
    • Durek, P.1
  • 21
    • 70350450234 scopus 로고    scopus 로고
    • Activation of the TRPV4 ion channel is enhanced by phosphorylation
    • Fan,H.-C. et al. (2009) Activation of the TRPV4 ion channel is enhanced by phosphorylation. J. Biol. Chem., 284, 27884-27891.
    • (2009) J. Biol. Chem. , vol.284 , pp. 27884-27891
    • Fan, H.-C.1
  • 22
    • 60149095444 scopus 로고    scopus 로고
    • Most mammalian mRNAs are conserved targets of microRNAs
    • Friedman,R.C. et al. (2009) Most mammalian mRNAs are conserved targets of microRNAs. Genome Res., 19, 92-105.
    • (2009) Genome Res , vol.19 , pp. 92-105
    • Friedman, R.C.1
  • 23
    • 78650806643 scopus 로고    scopus 로고
    • The Musite open-source framework for phosphorylation-site prediction
    • Gao,J. and Xu,D. (2010) The Musite open-source framework for phosphorylation-site prediction. BMC Bioinformatics, 11 (Suppl. 12), S9.
    • (2010) BMC Bioinformatics , vol.11 , Issue.SUPPL. 12
    • Gao, J.1    Xu, D.2
  • 24
    • 68249084742 scopus 로고    scopus 로고
    • A new machine learning approach for protein phosphorylation site prediction in plants
    • Gao,J. et al. (2009) A new machine learning approach for protein phosphorylation site prediction in plants. Lect. Notes Comput. Sci., 5462/2009, 18-29.
    • (2009) Lect. Notes Comput. Sci. , vol.5462 , Issue.2009 , pp. 18-29
    • Gao, J.1
  • 25
    • 78650153738 scopus 로고    scopus 로고
    • Musite, a tool for global prediction of general and kinase-specific phosphorylation sites
    • Gao,J. et al. (2010) Musite, a tool for global prediction of general and kinase-specific phosphorylation sites. Mol. Cell Proteomics, 9, 2586-2600.
    • (2010) Mol. Cell Proteomics , vol.9 , pp. 2586-2600
    • Gao, J.1
  • 26
    • 0038386050 scopus 로고    scopus 로고
    • 3D-Jury: a simple approach to improve protein structure predictions
    • Ginalski,K. et al. (2003) 3D-Jury: a simple approach to improve protein structure predictions. Bioinformatics, 19, 1015-1018.
    • (2003) Bioinformatics , vol.19 , pp. 1015-1018
    • Ginalski, K.1
  • 27
    • 44149105911 scopus 로고    scopus 로고
    • PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites
    • Gnad,F. et al. (2007) PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites. Genome Biol., 8, R250.
    • (2007) Genome Biol , vol.8
    • Gnad, F.1
  • 28
    • 78651277460 scopus 로고    scopus 로고
    • the posttranslational modification database
    • PHOSIDA 2011
    • Gnad,F. et al. (2011) PHOSIDA 2011: the posttranslational modification database. Nucleic Acids Res., 39, D253-D260.
    • (2011) Nucleic Acids Res , vol.39
    • Gnad, F.1
  • 29
    • 38549127781 scopus 로고    scopus 로고
    • PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor
    • Heazlewood,J.L. et al. (2008) PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor. Nucleic Acids Res., 36, D1015-D1021.
    • (2008) Nucleic Acids Res , vol.36
    • Heazlewood, J.L.1
  • 30
    • 33747836005 scopus 로고    scopus 로고
    • Phosphoproteomics toolbox: computational biology, protein chemistry and mass spectrometry
    • Hjerrild,M. and Gammeltoft,S. (2006) Phosphoproteomics toolbox: computational biology, protein chemistry and mass spectrometry. FEBS Lett., 580, 4764-4770.
    • (2006) FEBS Lett , vol.580 , pp. 4764-4770
    • Hjerrild, M.1    Gammeltoft, S.2
  • 31
    • 4444320150 scopus 로고    scopus 로고
    • Identification of phosphorylation sites in protein kinase A substrates using artificial neural networks and mass spectrometry
    • Hjerrild,M. et al. (2004). Identification of phosphorylation sites in protein kinase A substrates using artificial neural networks and mass spectrometry. J. Proteome Res., 3, 426-433.
    • (2004) J. Proteome Res. , vol.3 , pp. 426-433
    • Hjerrild, M.1
  • 32
    • 2942598149 scopus 로고    scopus 로고
    • PhosphoSite: a bioinformatics resource dedicated to physiological protein phosphorylation
    • Hornbeck,P.V. et al. (2004) PhosphoSite: a bioinformatics resource dedicated to physiological protein phosphorylation. Proteomics, 4, 1551-1561.
    • (2004) Proteomics , vol.4 , pp. 1551-1561
    • Hornbeck, P.V.1
  • 33
    • 0036199649 scopus 로고    scopus 로고
    • Peptide chips for the quantitative evaluation of protein kinase activity
    • Houseman,B.T. et al. (2002) Peptide chips for the quantitative evaluation of protein kinase activity. Nat. Biotechnol., 20, 270-274.
    • (2002) Nat. Biotechnol. , vol.20 , pp. 270-274
    • Houseman, B.T.1
  • 34
    • 22344445559 scopus 로고    scopus 로고
    • Incorporating hidden Markov models for identifying protein kinase-specific phosphorylation sites
    • Huang,H.-D. et al. (2005a) Incorporating hidden Markov models for identifying protein kinase-specific phosphorylation sites. J. Comput. Chem., 26, 1032-1041.
    • (2005) J. Comput. Chem. , vol.26 , pp. 1032-1041
    • Huang, H.-D.1
  • 35
    • 23144434356 scopus 로고    scopus 로고
    • KinasePhos: a web tool for identifying protein kinasespecific phosphorylation sites
    • Huang,H.-D. et al. (2005b) KinasePhos: a web tool for identifying protein kinasespecific phosphorylation sites. Nucleic Acids Res., 33, W226-W229.
    • (2005) Nucleic Acids Res , vol.33
    • Huang, H.-D.1
  • 36
    • 78650466243 scopus 로고    scopus 로고
    • A tissue-specific atlas of mouse protein phosphorylation and expression
    • Huttlin,E.L. et al. (2010) A tissue-specific atlas of mouse protein phosphorylation and expression. Cell, 143, 1174-1189.
    • (2010) Cell , vol.143 , pp. 1174-1189
    • Huttlin, E.L.1
  • 37
    • 2342473198 scopus 로고    scopus 로고
    • The importance of intrinsic disorder for protein phosphorylation
    • Iakoucheva,L.M. et al. (2004) The importance of intrinsic disorder for protein phosphorylation. Nucleic Acids Res., 32, 1037-1049.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1037-1049
    • Iakoucheva, L.M.1
  • 38
    • 34248576306 scopus 로고    scopus 로고
    • NetPhosYeast: prediction of protein phosphorylation sites in yeast
    • Ingrell,C.R. et al. (2007) NetPhosYeast: prediction of protein phosphorylation sites in yeast. Bioinformatics, 23, 895-897.
    • (2007) Bioinformatics , vol.23 , pp. 895-897
    • Ingrell, C.R.1
  • 39
    • 62349135257 scopus 로고    scopus 로고
    • Genome to kinome: species-specific peptide arrays for kinome analysis
    • Jalal,S. et al. (2009) Genome to kinome: species-specific peptide arrays for kinome analysis. Sci. Signal., 2, pl1.
    • (2009) Sci. Signal. , vol.2
    • Jalal, S.1
  • 40
    • 34548839661 scopus 로고    scopus 로고
    • A systematic comparative and structural analysis of protein phosphorylation sites based on the mtcPTM database
    • Jiménez,J.L. et al. (2007) A systematic comparative and structural analysis of protein phosphorylation sites based on the mtcPTM database. Genome Biol., 8, R90.
    • (2007) Genome Biol , vol.8
    • Jiménez, J.L.1
  • 41
    • 75149118340 scopus 로고    scopus 로고
    • PostMod: sequence based prediction of kinase-specific phosphorylation sites with indirect relationship
    • Jung,I. et al. (2010) PostMod: sequence based prediction of kinase-specific phosphorylation sites with indirect relationship. BMC Bioinformatics, 11 (Suppl. 1), S10.
    • (2010) BMC Bioinformatics , vol.11 , Issue.SUPPL. 1
    • Jung, I.1
  • 42
    • 38349175323 scopus 로고    scopus 로고
    • A probabilistic meta-predictor for the MHC class II binding peptides
    • Karpenko,O. et al. (2008) A probabilistic meta-predictor for the MHC class II binding peptides. Immunogenetics, 60, 25-36.
    • (2008) Immunogenetics , vol.60 , pp. 25-36
    • Karpenko, O.1
  • 43
    • 0017638132 scopus 로고
    • Role of multiple basic residues in determining the substrate specificity of cyclicAMP-dependent protein kinase
    • Kemp,B.E. et al. (1977) Role of multiple basic residues in determining the substrate specificity of cyclicAMP-dependent protein kinase. J. Biol. Chem., 252, 4888-4894.
    • (1977) J. Biol. Chem. , vol.252 , pp. 4888-4894
    • Kemp, B.E.1
  • 44
    • 78851469750 scopus 로고    scopus 로고
    • Counter-regulation mechanism of IL-4 and IFN-± signal transduction through cytosolic retention of the pY-STAT6:pY-STAT2:p48 complex
    • Kim,S.-H. and Lee,C.-E. (2011) Counter-regulation mechanism of IL-4 and IFN-± signal transduction through cytosolic retention of the pY-STAT6:pY-STAT2:p48 complex. Eur. J. Immunol., 41, 461-472.
    • (2011) Eur. J. Immunol. , vol.41 , pp. 461-472
    • Kim, S.-H.1    Lee, C.-E.2
  • 45
    • 8844219516 scopus 로고    scopus 로고
    • Prediction of phosphorylation sites using SVMs
    • Kim,J.H. et al. (2004) Prediction of phosphorylation sites using SVMs. Bioinformatics, 20, 3179-3184.
    • (2004) Bioinformatics , vol.20 , pp. 3179-3184
    • Kim, J.H.1
  • 46
    • 41849142273 scopus 로고    scopus 로고
    • Charge environments around phosphorylation sites in proteins
    • Kitchen,J. et al. (2008) Charge environments around phosphorylation sites in proteins. BMC Struct. Biol., 8, 19.
    • (2008) BMC Struct. Biol. , vol.8 , pp. 19
    • Kitchen, J.1
  • 47
    • 29144510554 scopus 로고    scopus 로고
    • Substrate specificity of protein kinases and computational prediction of substrates
    • Kobe,B. et al. (2005) Substrate specificity of protein kinases and computational prediction of substrates. Biochim. Biophys. Acta, 1754, 200-209.
    • (2005) Biochim. Biophys. Acta , vol.1754 , pp. 200-209
    • Kobe, B.1
  • 48
    • 12344288032 scopus 로고    scopus 로고
    • Highly specific prediction of phosphorylation sites in proteins
    • Koenig,M. and Grabe,N. (2004) Highly specific prediction of phosphorylation sites in proteins. Bioinformatics, 20, 3620-3627.
    • (2004) Bioinformatics , vol.20 , pp. 3620-3627
    • Koenig, M.1    Grabe, N.2
  • 49
    • 0032922002 scopus 로고    scopus 로고
    • PhosphoBase, a database of phosphorylation sites: release 2
    • Kreegipuu,A. et al. (1999) PhosphoBase, a database of phosphorylation sites: release 2.0. Nucleic Acids Res., 27, 237-239.
    • (1999) 0. Nucleic Acids Res. , vol.27 , pp. 237-239
    • Kreegipuu, A.1
  • 50
    • 77953040994 scopus 로고    scopus 로고
    • The role of YAP transcription coactivator in regulating stem cell self-renewal and differentiation
    • Lian,I. et al. (2010) The role of YAP transcription coactivator in regulating stem cell self-renewal and differentiation. Genes Dev., 24, 1106-1118.
    • (2010) Genes Dev , vol.24 , pp. 1106-1118
    • Lian, I.1
  • 51
    • 34250743173 scopus 로고    scopus 로고
    • Systematic discovery of in vivo phosphorylation networks
    • Linding,R. et al. (2007) Systematic discovery of in vivo phosphorylation networks. Cell, 129, 1415-1426.
    • (2007) Cell , vol.129 , pp. 1415-1426
    • Linding, R.1
  • 52
    • 34548574787 scopus 로고    scopus 로고
    • Meta-prediction of protein subcellular localization with reduced voting
    • Liu,J. et al. (2007) Meta-prediction of protein subcellular localization with reduced voting. Nucleic Acids Res., 35, e96.
    • (2007) Nucleic Acids Res , vol.35
    • Liu, J.1
  • 53
    • 45549090122 scopus 로고    scopus 로고
    • Prediction of phosphotyrosine signaling networks using a scoring matrix-assisted ligand identification approach
    • Li,L. et al. (2008a) Prediction of phosphotyrosine signaling networks using a scoring matrix-assisted ligand identification approach. Nucleic Acids Res., 36, 3263-3273.
    • (2008) Nucleic Acids Res , vol.36 , pp. 3263-3273
    • Li, L.1
  • 54
    • 37849047943 scopus 로고    scopus 로고
    • Prediction of kinase-specific phosphorylation sites with sequence features by a log-odds ratio approach
    • Li,T. et al. (2008b) Prediction of kinase-specific phosphorylation sites with sequence features by a log-odds ratio approach. Proteins, 70, 404-414.
    • (2008) Proteins , vol.70 , pp. 404-414
    • Li, T.1
  • 55
    • 78649759348 scopus 로고    scopus 로고
    • Identifying human kinase-specific protein phosphorylation sites by integrating heterogeneous information from various sources
    • Li,T. et al. (2010) Identifying human kinase-specific protein phosphorylation sites by integrating heterogeneous information from various sources. PLoS One, 5, e15411.
    • (2010) PLoS One , vol.5
    • Li, T.1
  • 56
    • 23944502316 scopus 로고    scopus 로고
    • Rapid immunosuppressive effects of glucocorticoids mediated through Lck and Fyn
    • Löwenberg,M. et al. (2005) Rapid immunosuppressive effects of glucocorticoids mediated through Lck and Fyn. Blood, 106, 1703-1710.
    • (2005) Blood , vol.106 , pp. 1703-1710
    • Löwenberg, M.1
  • 57
    • 56049096791 scopus 로고    scopus 로고
    • Conservation of protein phosphorylation sites within gene families and across species
    • Maathuis,F.J. (2008) Conservation of protein phosphorylation sites within gene families and across species. Plant Signal. Behav., 3, 1011-1013.
    • (2008) Plant Signal. Behav. , vol.3 , pp. 1011-1013
    • Maathuis, F.J.1
  • 58
    • 34247325212 scopus 로고    scopus 로고
    • The serine/threonine/tyrosine phosphoproteome of the model bacterium Bacillus subtilis
    • Macek,B. et al. (2007) The serine/threonine/tyrosine phosphoproteome of the model bacterium Bacillus subtilis. Mol. Cell Proteomics, 6, 697-707.
    • (2007) Mol. Cell Proteomics , vol.6 , pp. 697-707
    • Macek, B.1
  • 59
    • 39749166860 scopus 로고    scopus 로고
    • Phosphoproteome analysis of E. coli reveals evolutionary conservation of bacterial Ser/Thr/Tyr phosphorylation
    • Macek,B. et al. (2008) Phosphoproteome analysis of E. coli reveals evolutionary conservation of bacterial Ser/Thr/Tyr phosphorylation. Mol Cell Proteomics, 7, 299-307.
    • (2008) Mol Cell Proteomics , vol.7 , pp. 299-307
    • Macek, B.1
  • 60
    • 0037032835 scopus 로고    scopus 로고
    • The protein kinase complement of the human genome
    • Manning,G. et al. (2002) The protein kinase complement of the human genome. Science, 298, 1912-1934.
    • (2002) Science , vol.298 , pp. 1912-1934
    • Manning, G.1
  • 61
    • 55249095331 scopus 로고    scopus 로고
    • Phosphorylation of SUMO-1 occurs in vivo and is conserved through evolution
    • Matic,I. et al. (2008) Phosphorylation of SUMO-1 occurs in vivo and is conserved through evolution. J. Proteome Res., 7, 4050-4057.
    • (2008) J. Proteome Res. , vol.7 , pp. 4050-4057
    • Matic, I.1
  • 62
    • 0030727172 scopus 로고    scopus 로고
    • Mitogenic activation, phosphorylation, and nuclear translocation of protein kinase Bbeta
    • Meier,R. et al. (1997) Mitogenic activation, phosphorylation, and nuclear translocation of protein kinase Bbeta. J. Biol. Chem., 272, 30491-30497.
    • (1997) J. Biol. Chem. , vol.272 , pp. 30491-30497
    • Meier, R.1
  • 63
    • 65349140628 scopus 로고    scopus 로고
    • Kinase-specific prediction of protein phosphorylation sites
    • Miller,M.L. and Blom,N. (2009) Kinase-specific prediction of protein phosphorylation sites. Methods Mol. Biol., 527, 299-310.
    • (2009) Methods Mol. Biol. , vol.527 , pp. 299-310
    • Miller, M.L.1    Blom, N.2
  • 64
    • 34447527882 scopus 로고    scopus 로고
    • Clustering of phosphorylation site recognition motifs can be exploited to predict the targets of cyclin-dependent kinase
    • Moses,A.M. et al. (2007) Clustering of phosphorylation site recognition motifs can be exploited to predict the targets of cyclin-dependent kinase. Genome Biol., 8, R23.
    • (2007) Genome Biol , vol.8
    • Moses, A.M.1
  • 65
    • 77954247252 scopus 로고    scopus 로고
    • Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants
    • Nakagami,H. et al. (2010) Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants. Plant Physiol., 153, 1161-1174.
    • (2010) Plant Physiol , vol.153 , pp. 1161-1174
    • Nakagami, H.1
  • 66
    • 34248213042 scopus 로고    scopus 로고
    • pkaPS: prediction of protein kinase A phosphorylation sites with the simplified kinase-substrate binding model
    • Neuberger,G. et al. (2007) pkaPS: prediction of protein kinase A phosphorylation sites with the simplified kinase-substrate binding model. Biol. Direct., 2, 1.
    • (2007) Biol. Direct. , vol.2 , pp. 1
    • Neuberger, G.1
  • 68
    • 17644371944 scopus 로고    scopus 로고
    • A support vector machine approach to the identification of phosphorylation sites
    • Plewczyński,D. et al. (2005) A support vector machine approach to the identification of phosphorylation sites. Cell Mol. Biol. Lett., 10, 73-89.
    • (2005) Cell Mol. Biol. Lett. , vol.10 , pp. 73-89
    • Plewczyński, D.1
  • 69
    • 37049020959 scopus 로고    scopus 로고
    • AutoMotif Server for prediction of phosphorylation sites in proteins using support vector machine: 2007 update
    • Plewczyński,D. et al. (2008) AutoMotif Server for prediction of phosphorylation sites in proteins using support vector machine: 2007 update. J. Mol. Model, 14, 69-76.
    • (2008) J. Mol. Model , vol.14 , pp. 69-76
    • Plewczyński, D.1
  • 70
    • 79251584033 scopus 로고    scopus 로고
    • A role for p38 MAPK in the regulation of ciliary motion in a eukaryote
    • Ressurreição,M. et al. (2011) A role for p38 MAPK in the regulation of ciliary motion in a eukaryote. BMC Cell Biol., 12, 6.
    • (2011) BMC Cell Biol , vol.12 , pp. 6
    • Ressurreição, M.1
  • 71
    • 62549126959 scopus 로고    scopus 로고
    • Genome-wide analysis to predict protein sequence variations that change phosphorylation sites or their corresponding kinases
    • Ryu,G.-M. et al. (2009) Genome-wide analysis to predict protein sequence variations that change phosphorylation sites or their corresponding kinases. Nucleic Acids Res., 37, 1297-1307.
    • (2009) Nucleic Acids Res , vol.37 , pp. 1297-1307
    • Ryu, G.-M.1
  • 72
    • 48449084853 scopus 로고    scopus 로고
    • The Predikin webserver: improved prediction of protein kinase peptide specificity using structural information
    • Saunders,N.F.W. and Kobe,B. (2008) The Predikin webserver: improved prediction of protein kinase peptide specificity using structural information. Nucleic Acids Res., 36, W286-W290.
    • (2008) Nucleic Acids Res , vol.36
    • Saunders, N.F.W.1    Kobe, B.2
  • 73
    • 44849086809 scopus 로고    scopus 로고
    • Predikin and PredikinDB: a computational framework for the prediction of protein kinase peptide specificity and an associated database of phosphorylation sites
    • Saunders,N.F.W. et al. (2008) Predikin and PredikinDB: a computational framework for the prediction of protein kinase peptide specificity and an associated database of phosphorylation sites. BMC Bioinformatics, 9, 245.
    • (2008) BMC Bioinformatics , vol.9 , pp. 245
    • Saunders, N.F.W.1
  • 74
    • 61649126270 scopus 로고    scopus 로고
    • Predicting protein post-translational modifications using metaanalysis of proteome scale data sets
    • Schwartz,D. et al. (2009) Predicting protein post-translational modifications using metaanalysis of proteome scale data sets. Mol. Cell Proteomics, 8, 365-379.
    • (2009) Mol. Cell Proteomics , vol.8 , pp. 365-379
    • Schwartz, D.1
  • 75
    • 23844495275 scopus 로고    scopus 로고
    • Predicting the phosphorylation sites using hidden Markov models and machine learning methods
    • Senawongse,P. et al. (2005) Predicting the phosphorylation sites using hidden Markov models and machine learning methods. J. Chem. Inf. Model., 45, 1147-1152.
    • (2005) J. Chem. Inf. Model. , vol.45 , pp. 1147-1152
    • Senawongse, P.1
  • 76
    • 0023651307 scopus 로고
    • RNA splice junctions of different classes of eukaryotes: sequence statistics and functional implications in gene expression
    • Shapiro,M.B. and Senapathy,P. (1987) RNA splice junctions of different classes of eukaryotes: sequence statistics and functional implications in gene expression. Nucleic Acids Res., 15, 7155-7174.
    • (1987) Nucleic Acids Res , vol.15 , pp. 7155-7174
    • Shapiro, M.B.1    Senapathy, P.2
  • 77
    • 33847637338 scopus 로고    scopus 로고
    • Euk-PLoc: an ensemble classifier for large-scale eukaryotic protein subcellular location prediction
    • Shen,H.-B. et al. (2007) Euk-PLoc: an ensemble classifier for large-scale eukaryotic protein subcellular location prediction. Amino Acids, 33, 57-67.
    • (2007) Amino Acids , vol.33 , pp. 57-67
    • Shen, H.-B.1


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