-
1
-
-
84900430089
-
Does the cosmopolitan diatom Gomphonema parvulum (Kützing) Kützing have a biogeography?
-
Abarca N, Enke N, Zimmermann J, Jahn R (2014) Does the cosmopolitan diatom Gomphonema parvulum (Kützing) Kützing have a biogeography? PLoS ONE, 9, e86885.
-
(2014)
PLoS ONE
, vol.9
, pp. e86885
-
-
Abarca, N.1
Enke, N.2
Zimmermann, J.3
Jahn, R.4
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. Journal of Molecular Biology, 215, 403-410.
-
(1990)
Journal of Molecular Biology
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
33744517090
-
The evolution of elongate shape in diatoms
-
Alverson AJ, Cannone JJ, Gutell RR, Theriot EC (2006) The evolution of elongate shape in diatoms. Journal of Phycology, 42, 655-668.
-
(2006)
Journal of Phycology
, vol.42
, pp. 655-668
-
-
Alverson, A.J.1
Cannone, J.J.2
Gutell, R.R.3
Theriot, E.C.4
-
4
-
-
79959250316
-
DNA barcoding of the ichthyofauna of Taal Lake, Philippines
-
Aquilino SVL, Tango JM, Fontanilla IKC et al. (2011) DNA barcoding of the ichthyofauna of Taal Lake, Philippines. Molecular Ecology Resources, 11, 612-619.
-
(2011)
Molecular Ecology Resources
, vol.11
, pp. 612-619
-
-
Aquilino, S.V.L.1
Tango, J.M.2
Fontanilla, I.K.C.3
-
5
-
-
33748157236
-
Diatom illustrations-an appeal
-
Archibald REM (1984) Diatom illustrations-an appeal. Bacillaria, 7, 173-178.
-
(1984)
Bacillaria
, vol.7
, pp. 173-178
-
-
Archibald, R.E.M.1
-
6
-
-
84982646849
-
Planktonic diatoms and some diatom-silica relations in a shallow eutrophic Scottish loch
-
Bailey-Watts AE (1976) Planktonic diatoms and some diatom-silica relations in a shallow eutrophic Scottish loch. Freshwater Biology, 6, 69-80.
-
(1976)
Freshwater Biology
, vol.6
, pp. 69-80
-
-
Bailey-Watts, A.E.1
-
7
-
-
84926448701
-
The Barralab Website: Description of how to install Splits as a library in R.
-
Accesed 2013.
-
Barraclough T (2013) The Barralab Website: Description of how to install Splits as a library in R. Available: http://barralab.bio.ic.ac.uk/downloads.html. Accesed 2013.
-
(2013)
-
-
Barraclough, T.1
-
9
-
-
79551476785
-
Depicting more accurate pictures of protistan community complexity using pyrosequencing of hypervariable SSU rRNA gene regions
-
Behnke A, Engel M, Christen R et al. (2011) Depicting more accurate pictures of protistan community complexity using pyrosequencing of hypervariable SSU rRNA gene regions. Environmental Microbiology, 13, 340-349.
-
(2011)
Environmental Microbiology
, vol.13
, pp. 340-349
-
-
Behnke, A.1
Engel, M.2
Christen, R.3
-
10
-
-
84858617141
-
Sequencing our way towards understanding global eukaryotic biodiversity
-
Bik HM, Porazinska DL, Creer S et al. (2012) Sequencing our way towards understanding global eukaryotic biodiversity. Trends in Ecology & Evolution, 27, 233-243.
-
(2012)
Trends in Ecology & Evolution
, vol.27
, pp. 233-243
-
-
Bik, H.M.1
Porazinska, D.L.2
Creer, S.3
-
11
-
-
43249109296
-
Error cascades in the biological sciences: the unwanted consequences of using bad taxonomy in ecology
-
Bortolus A (2008) Error cascades in the biological sciences: the unwanted consequences of using bad taxonomy in ecology. AMBIO: A Journal of the Human Environment, 37, 114-118.
-
(2008)
AMBIO: A Journal of the Human Environment
, vol.37
, pp. 114-118
-
-
Bortolus, A.1
-
12
-
-
80055120210
-
Molecular assessment of phylogenetic relationships in selected species/genera in the Naviculoid diatoms (Bacillariophyta)
-
Bruder K, Sato S, Medlin LK (2008) Molecular assessment of phylogenetic relationships in selected species/genera in the Naviculoid diatoms (Bacillariophyta). Diatom, 24, 8-24.
-
(2008)
Diatom
, vol.24
, pp. 8-24
-
-
Bruder, K.1
Sato, S.2
Medlin, L.K.3
-
14
-
-
79959283692
-
How DNA barcodes complement taxonomy and explore species diversity: the case study of a poorly understood marine fauna
-
Chen J, Li Q, Kong L, Yu H (2011) How DNA barcodes complement taxonomy and explore species diversity: the case study of a poorly understood marine fauna. PLoS ONE, 6, e21326.
-
(2011)
PLoS ONE
, vol.6
, pp. e21326
-
-
Chen, J.1
Li, Q.2
Kong, L.3
Yu, H.4
-
17
-
-
84866236892
-
Multi-locus species delimitation in closely related animals and fungi: one marker is not enough
-
Dupuis JR, Roe AD, Sperling FAH (2012) Multi-locus species delimitation in closely related animals and fungi: one marker is not enough. Molecular Ecology, 21, 4422-4436.
-
(2012)
Molecular Ecology
, vol.21
, pp. 4422-4436
-
-
Dupuis, J.R.1
Roe, A.D.2
Sperling, F.A.H.3
-
18
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research, 32, 1792-1797.
-
(2004)
Nucleic Acids Research
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
19
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar RC (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics, 26, 2460-2461.
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
20
-
-
84855951093
-
Coherent dynamics and association networks among lake bacterioplankton taxa
-
Eiler A, Heinrich F, Bertilsson S (2011) Coherent dynamics and association networks among lake bacterioplankton taxa. The ISME Journal, 6, 330-342.
-
(2011)
The ISME Journal
, vol.6
, pp. 330-342
-
-
Eiler, A.1
Heinrich, F.2
Bertilsson, S.3
-
21
-
-
84872777339
-
Unveiling distribution patterns of freshwater phytoplankton by a next generation sequencing based approach
-
Eiler A, Drakare S, Bertilsson S et al. (2013) Unveiling distribution patterns of freshwater phytoplankton by a next generation sequencing based approach. PLoS ONE, 8, e53516.
-
(2013)
PLoS ONE
, vol.8
, pp. e53516
-
-
Eiler, A.1
Drakare, S.2
Bertilsson, S.3
-
22
-
-
84926455779
-
EuropeanStandard. EN 14407. Water Quality - Guidance Standardfor the Identi?cation, Enumeration and Interpretation of Benthic Diatom Samples from Running Waters
-
CEN
-
European-Committee-for-Standardization (2003) EuropeanStandard. EN 14407. Water Quality - Guidance Standardfor the Identi?cation, Enumeration and Interpretation of Benthic Diatom Samples from Running Waters. CEN, 14 pp.
-
(2003)
, pp. 14
-
-
-
23
-
-
20344368493
-
EuropeanStandard. EN 14407. Water Quality - Guidance Standardfor the Identification, Enumeration and Interpretation of Benthic Diatom Samples from Running Waters
-
CEN Brussels
-
European-Committee-for-Standardization (2004) EuropeanStandard. EN 14407. Water Quality - Guidance Standardfor the Identification, Enumeration and Interpretation of Benthic Diatom Samples from Running Waters. CEN Brussels, 12 pp.
-
(2004)
, pp. 12
-
-
-
24
-
-
34347259205
-
An assessment of potential diatom "barcode" genes (cox1, rbcL, 18S and ITS rDNA) and their effectiveness in determining relationships in Sellaphora (Bacillariophyta)
-
Evans KM, Wortley AH, Mann DG (2007) An assessment of potential diatom "barcode" genes (cox1, rbcL, 18S and ITS rDNA) and their effectiveness in determining relationships in Sellaphora (Bacillariophyta). Protist, 158, 349-364.
-
(2007)
Protist
, vol.158
, pp. 349-364
-
-
Evans, K.M.1
Wortley, A.H.2
Mann, D.G.3
-
25
-
-
38949104099
-
A molecular systematic approach to explore diversity within the Sellaphora pupula species complex (Bacillariophyta)
-
Evans KM, Wortley AH, Simpson GE, Chepurnov VA, Mann DG (2008) A molecular systematic approach to explore diversity within the Sellaphora pupula species complex (Bacillariophyta). Journal of Phycology, 44, 215-231.
-
(2008)
Journal of Phycology
, vol.44
, pp. 215-231
-
-
Evans, K.M.1
Wortley, A.H.2
Simpson, G.E.3
Chepurnov, V.A.4
Mann, D.G.5
-
26
-
-
0032504117
-
Biogeochemical controls and feedbacks on ocean primary production
-
Falkowski PG, Barber RT, Smetacek V (1998) Biogeochemical controls and feedbacks on ocean primary production. Science, 281, 200-206.
-
(1998)
Science
, vol.281
, pp. 200-206
-
-
Falkowski, P.G.1
Barber, R.T.2
Smetacek, V.3
-
27
-
-
0032503986
-
Primary production of the biosphere: integrating terrestrial and oceanic components
-
Field CB, Behrenfeld MJ, Randerson JT, Falkowski P (1998) Primary production of the biosphere: integrating terrestrial and oceanic components. Science, 281, 237-240.
-
(1998)
Science
, vol.281
, pp. 237-240
-
-
Field, C.B.1
Behrenfeld, M.J.2
Randerson, J.T.3
Falkowski, P.4
-
28
-
-
34247401269
-
Independently evolving species in asexual bdelloid rotifers
-
Fontaneto D, Herniou EA, Boschetti C et al. (2007) Independently evolving species in asexual bdelloid rotifers. PLoS Biology, 5, e87.
-
(2007)
PLoS Biology
, vol.5
, pp. e87
-
-
Fontaneto, D.1
Herniou, E.A.2
Boschetti, C.3
-
29
-
-
84865561961
-
Coalescent-based species delimitation in an integrative taxonomy
-
Fujita MK, Leaché AD, Burbrink FT, McGuire JA, Moritz C (2012) Coalescent-based species delimitation in an integrative taxonomy. Trends in Ecology & Evolution, 27, 480-488.
-
(2012)
Trends in Ecology & Evolution
, vol.27
, pp. 480-488
-
-
Fujita, M.K.1
Leaché, A.D.2
Burbrink, F.T.3
McGuire, J.A.4
Moritz, C.5
-
30
-
-
77957245259
-
A clustering optimization strategy for molecular taxonomy applied to planktonic foraminifera SSU rDNA
-
Göker M, Grimm GW, Auch AF, Aurahs R, Kučera M (2010) A clustering optimization strategy for molecular taxonomy applied to planktonic foraminifera SSU rDNA. Evolutionary Bioinformatics, 6, 97-112.
-
(2010)
Evolutionary Bioinformatics
, vol.6
, pp. 97-112
-
-
Göker, M.1
Grimm, G.W.2
Auch, A.F.3
Aurahs, R.4
Kučera, M.5
-
31
-
-
55849101172
-
Widespread occurrence and genetic diversity of marine parasitoids belonging to Syndiniales (Alveolata)
-
Guillou L, Viprey M, Chambouvet A et al. (2008) Widespread occurrence and genetic diversity of marine parasitoids belonging to Syndiniales (Alveolata). Environmental Microbiology, 10, 3349-3365.
-
(2008)
Environmental Microbiology
, vol.10
, pp. 3349-3365
-
-
Guillou, L.1
Viprey, M.2
Chambouvet, A.3
-
33
-
-
79954587407
-
Environmental barcoding: a next-generation sequencing approach for biomonitoring applications using river benthos
-
Hajibabaei M, Shokralla S, Zhou X, Singer G, Baird D (2011) Environmental barcoding: a next-generation sequencing approach for biomonitoring applications using river benthos. PLoS ONE, 6, e17497.
-
(2011)
PLoS ONE
, vol.6
, pp. e17497
-
-
Hajibabaei, M.1
Shokralla, S.2
Zhou, X.3
Singer, G.4
Baird, D.5
-
34
-
-
84872282833
-
Assessing biodiversity of a freshwater benthic macroinvertebrate community through non-destructive environmental barcoding of DNA from preservative ethanol
-
Hajibabaei M, Spall J, Shokralla S, van Konynenburg S (2012) Assessing biodiversity of a freshwater benthic macroinvertebrate community through non-destructive environmental barcoding of DNA from preservative ethanol. BMC Ecology, 12, 1-10.
-
(2012)
BMC Ecology
, vol.12
, pp. 1-10
-
-
Hajibabaei, M.1
Spall, J.2
Shokralla, S.3
van Konynenburg, S.4
-
35
-
-
79957979297
-
Barcoding diatoms: exploring alternatives to COI-5P
-
Hamsher SE, Evans KM, Mann DG, Poulíčková A, Saunders GW (2011) Barcoding diatoms: exploring alternatives to COI-5P. Protist, 162, 405-422.
-
(2011)
Protist
, vol.162
, pp. 405-422
-
-
Hamsher, S.E.1
Evans, K.M.2
Mann, D.G.3
Poulíčková, A.4
Saunders, G.W.5
-
36
-
-
0037423543
-
Biological identifications through DNA barcodes
-
Hebert PDN, Cywinska A, Ball SL, deWaard JR (2003) Biological identifications through DNA barcodes. Proceedings of the Royal Society of London. Series B: Biological Sciences 270, 313-321.
-
(2003)
Proceedings of the Royal Society of London. Series B: Biological Sciences
, vol.270
, pp. 313-321
-
-
Hebert, P.D.N.1
Cywinska, A.2
Ball, S.L.3
deWaard, J.R.4
-
37
-
-
84865306277
-
Pitfalls of establishing DNA barcoding systems in protists: the cryptophyceae as a test case
-
Hoef-Emden K (2012) Pitfalls of establishing DNA barcoding systems in protists: the cryptophyceae as a test case. PLoS ONE, 7, e43652.
-
(2012)
PLoS ONE
, vol.7
, pp. e43652
-
-
Hoef-Emden, K.1
-
39
-
-
0034849408
-
MRBAYES: Bayesian inference of phylogenetic trees
-
Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics, 17, 754-755.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
40
-
-
34948842866
-
Accuracy and quality of massively parallel DNA pyrosequencing
-
Huse SM, Huber JA, Morrison HG, Sogin ML, Welch D (2007) Accuracy and quality of massively parallel DNA pyrosequencing. Genome Biology, 8, 143-152.
-
(2007)
Genome Biology
, vol.8
, pp. 143-152
-
-
Huse, S.M.1
Huber, J.A.2
Morrison, H.G.3
Sogin, M.L.4
Welch, D.5
-
41
-
-
0343440459
-
The structure of the frustule and its variability in clones and populations
-
Jahn R (1984) The structure of the frustule and its variability in clones and populations. Proceedings of the 8th International Diatom Symposium 1984. 191-204.
-
(1984)
Proceedings of the 8th International Diatom Symposium 1984
, pp. 191-204
-
-
Jahn, R.1
-
42
-
-
33645756665
-
AlgaTerra Information System (online). Botanic Garden and Botanical Museum Berlin-Dahlem, Freie Universität Berlin
-
Jahn R, Kusber WH (2005+) AlgaTerra Information System (online). Botanic Garden and Botanical Museum Berlin-Dahlem, Freie Universität Berlin. http://www.algaterra.org.
-
(2005)
-
-
Jahn, R.1
Kusber, W.H.2
-
43
-
-
78951479094
-
Diatoms and DNA barcoding: a pilot study on an environmental sample
-
(eds Kusber W. & Jahn R.) - Botanic Garden and Botanical Museum Berlin-Dahlem, Berlin.
-
Jahn R, Zetzsche H, Reinhardt R, Gemeinholzer B (2007) Diatoms and DNA barcoding: a pilot study on an environmental sample. In: Proceedings of the 1st Central European Diatom Meeting 2007 (eds Kusber W. & Jahn R.), pp. 63-68. Botanic Garden and Botanical Museum Berlin-Dahlem, Berlin.
-
(2007)
Proceedings of the 1st Central European Diatom Meeting 2007
, pp. 63-68
-
-
Jahn, R.1
Zetzsche, H.2
Reinhardt, R.3
Gemeinholzer, B.4
-
44
-
-
0027803436
-
Diatom communities in the Vanishing and Ornithologist Creek, King George Island, South Shetlands, Antarctica
-
Kawecka B, Olech M (1993) Diatom communities in the Vanishing and Ornithologist Creek, King George Island, South Shetlands, Antarctica. Hydrobiologia, 269-270, 327-333.
-
(1993)
Hydrobiologia
, vol.269-270
, pp. 327-333
-
-
Kawecka, B.1
Olech, M.2
-
45
-
-
0031986263
-
Use of the trophic diatom index to monitor eutrophication in rivers
-
Kelly MG (1998) Use of the trophic diatom index to monitor eutrophication in rivers. Water Research, 32, 236-242.
-
(1998)
Water Research
, vol.32
, pp. 236-242
-
-
Kelly, M.G.1
-
46
-
-
0031857727
-
Recommendations for the routine sampling of diatoms for water quality assessments in Europe
-
Kelly MG, Cazaubon A, Coring E et al. (1998) Recommendations for the routine sampling of diatoms for water quality assessments in Europe. Journal of Applied Phycology, 10, 215-224.
-
(1998)
Journal of Applied Phycology
, vol.10
, pp. 215-224
-
-
Kelly, M.G.1
Cazaubon, A.2
Coring, E.3
-
47
-
-
84883234478
-
First evidence of the existence of semi-cryptic species and of a phylogeographic structure in the gomphonema parvulum (Kützing) Kützing complex (Bacillariophyta)
-
Kermarrec L, Bouchez A, Rimet F, Humbert J-F (2013a) First evidence of the existence of semi-cryptic species and of a phylogeographic structure in the gomphonema parvulum (Kützing) Kützing complex (Bacillariophyta). Protist, 164, 686-705.
-
(2013)
Protist
, vol.164
, pp. 686-705
-
-
Kermarrec, L.1
Bouchez, A.2
Rimet, F.3
Humbert, J.-F.4
-
48
-
-
84879420877
-
Next-generation sequencing to inventory taxonomic diversity in eukaryotic communities: a test for freshwater diatoms
-
Kermarrec L, Franc A, Rimet F et al. (2013b) Next-generation sequencing to inventory taxonomic diversity in eukaryotic communities: a test for freshwater diatoms. Molecular Ecology Resources, 13, 607-619.
-
(2013)
Molecular Ecology Resources
, vol.13
, pp. 607-619
-
-
Kermarrec, L.1
Franc, A.2
Rimet, F.3
-
49
-
-
84896385833
-
A next-generation sequencing approach to river biomonitoring using benthic diatoms
-
Kermarrec L, Franc A, Rimet F et al. (2014) A next-generation sequencing approach to river biomonitoring using benthic diatoms. Freshwater Science, 33, 349-363.
-
(2014)
Freshwater Science
, vol.33
, pp. 349-363
-
-
Kermarrec, L.1
Franc, A.2
Rimet, F.3
-
50
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution, 16, 111-120.
-
(1980)
Journal of Molecular Evolution
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
51
-
-
84871808499
-
Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
-
Klindworth A, Pruesse E, Schweer T et al. (2013) Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies. Nucleic Acids Research, 41, e1.
-
(2013)
Nucleic Acids Research
, vol.41
, pp. e1
-
-
Klindworth, A.1
Pruesse, E.2
Schweer, T.3
-
52
-
-
84879698145
-
Barcoding in the dark? A critical view of the sufficiency of zoological DNA barcoding databases and a plea for broader integration of taxonomic knowledge
-
Kvist S (2013) Barcoding in the dark? A critical view of the sufficiency of zoological DNA barcoding databases and a plea for broader integration of taxonomic knowledge. Molecular Phylogenetics and Evolution, 69, 39-45.
-
(2013)
Molecular Phylogenetics and Evolution
, vol.69
, pp. 39-45
-
-
Kvist, S.1
-
53
-
-
84866707721
-
Distance and character-based evaluation of the V4 region of the 18S rRNA gene for the identification of diatoms (Bacillariophyceae)
-
Luddington IA, Kaczmarska I, Lovejoy C (2012) Distance and character-based evaluation of the V4 region of the 18S rRNA gene for the identification of diatoms (Bacillariophyceae). PLoS ONE, 7, e45664.
-
(2012)
PLoS ONE
, vol.7
, pp. e45664
-
-
Luddington, I.A.1
Kaczmarska, I.2
Lovejoy, C.3
-
54
-
-
81355146412
-
Survey of the efficacy of a short fragment of the rbcL gene as a supplemental DNA barcode for diatoms
-
MacGillivary ML, Kaczmarska I (2011) Survey of the efficacy of a short fragment of the rbcL gene as a supplemental DNA barcode for diatoms. Journal of Eukaryotic Microbiology, 58, 529-536.
-
(2011)
Journal of Eukaryotic Microbiology
, vol.58
, pp. 529-536
-
-
MacGillivary, M.L.1
Kaczmarska, I.2
-
55
-
-
0033384725
-
The species concept in diatoms
-
Mann DG (1999) The species concept in diatoms. Phycologia, 38, 437-495.
-
(1999)
Phycologia
, vol.38
, pp. 437-495
-
-
Mann, D.G.1
-
56
-
-
0030456630
-
Biodiversity, biogeography and conservation of diatoms
-
Mann DG, Droop SJM (1996) Biodiversity, biogeography and conservation of diatoms. Hydrobiologia, 336, 19-32.
-
(1996)
Hydrobiologia
, vol.336
, pp. 19-32
-
-
Mann, D.G.1
Droop, S.J.M.2
-
57
-
-
84879794063
-
An inordinate fondness? The number, distributions, and origins of diatom species
-
Mann DG, Vanormelingen P (2013) An inordinate fondness? The number, distributions, and origins of diatom species. Journal of Eukaryotic Microbiology, 60, 414-420.
-
(2013)
Journal of Eukaryotic Microbiology
, vol.60
, pp. 414-420
-
-
Mann, D.G.1
Vanormelingen, P.2
-
58
-
-
78951472185
-
DNA barcoding for species identification and discovery in diatoms
-
Mann D, Sato S, Trobajo R, Vanormelingen P, Souffreau C (2010) DNA barcoding for species identification and discovery in diatoms. Cryptogamie, Algologie, 31, 557-577.
-
(2010)
Cryptogamie, Algologie
, vol.31
, pp. 557-577
-
-
Mann, D.1
Sato, S.2
Trobajo, R.3
Vanormelingen, P.4
Souffreau, C.5
-
59
-
-
2542421957
-
Evolution of the diatoms: V. Morphological and cytological support for the major clades and a taxonomic revision
-
Medlin LK, Kaczmarska I (2004) Evolution of the diatoms: V. Morphological and cytological support for the major clades and a taxonomic revision. Phycologia, 43, 245-270.
-
(2004)
Phycologia
, vol.43
, pp. 245-270
-
-
Medlin, L.K.1
Kaczmarska, I.2
-
60
-
-
84989662257
-
Morphological and genetic variation within the diatom Skeletonema costatum (Bacillariophyta): evidence for a new species Skeletonema pseudocostatum
-
Medlin LK, Elwood HJ, Stickel S, Sogin ML (1991) Morphological and genetic variation within the diatom Skeletonema costatum (Bacillariophyta): evidence for a new species Skeletonema pseudocostatum. Journal of Phycology, 27, 514-524.
-
(1991)
Journal of Phycology
, vol.27
, pp. 514-524
-
-
Medlin, L.K.1
Elwood, H.J.2
Stickel, S.3
Sogin, M.L.4
-
61
-
-
70349409998
-
Accelerated species inventory on madagascar using coalescent-based models of species delineation
-
Monaghan MT, Wild R, Elliot M et al. (2009) Accelerated species inventory on madagascar using coalescent-based models of species delineation. Systematic Biology, 58, 298-311.
-
(2009)
Systematic Biology
, vol.58
, pp. 298-311
-
-
Monaghan, M.T.1
Wild, R.2
Elliot, M.3
-
62
-
-
23044531178
-
Identification of diatoms (Bacillariophyceae) during ecological assessments: comparison between Light Microscopy and Scanning Electron Microscopy techniques
-
Morales EA, Siver PA, Trainor FR (2001) Identification of diatoms (Bacillariophyceae) during ecological assessments: comparison between Light Microscopy and Scanning Electron Microscopy techniques. Proceedings of the Academy of Natural Sciences of Philadelphia, 151, 95-103.
-
(2001)
Proceedings of the Academy of Natural Sciences of Philadelphia
, vol.151
, pp. 95-103
-
-
Morales, E.A.1
Siver, P.A.2
Trainor, F.R.3
-
63
-
-
8844224149
-
DNA barcoding: promise and pitfalls
-
Moritz C, Cicero C (2004) DNA barcoding: promise and pitfalls. PLoS Biology, 2, e354.
-
(2004)
PLoS Biology
, vol.2
, pp. e354
-
-
Moritz, C.1
Cicero, C.2
-
64
-
-
79953695045
-
Eukaryotic richness in the abyss: insights from pyrotag sequencing
-
Pawlowski J, Christen R, Lecroq B et al. (2011) Eukaryotic richness in the abyss: insights from pyrotag sequencing. PLoS ONE, 6, e18169.
-
(2011)
PLoS ONE
, vol.6
, pp. e18169
-
-
Pawlowski, J.1
Christen, R.2
Lecroq, B.3
-
65
-
-
84870260174
-
CBOL Protist Working Group: barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms
-
Pawlowski J, Audic S, Adl S et al. (2012) CBOL Protist Working Group: barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms. PLoS Biology, 10, e1001419.
-
(2012)
PLoS Biology
, vol.10
, pp. e1001419
-
-
Pawlowski, J.1
Audic, S.2
Adl, S.3
-
66
-
-
34548444940
-
Sequence-based species delimitation for the DNA taxonomy of undescribed insects
-
Pons J, Barraclough TG, Gomez-Zurita J et al. (2006) Sequence-based species delimitation for the DNA taxonomy of undescribed insects. Systematic Biology, 55, 595-609.
-
(2006)
Systematic Biology
, vol.55
, pp. 595-609
-
-
Pons, J.1
Barraclough, T.G.2
Gomez-Zurita, J.3
-
67
-
-
54849176800
-
Ecological variation within Sellaphora species complexes (Bacillariophyceae): specialists or generalists?
-
Poulíčková A, Špačková J, Kelly M, Duchoslav M, Mann D (2008) Ecological variation within Sellaphora species complexes (Bacillariophyceae): specialists or generalists? Hydrobiologia, 614, 373-386.
-
(2008)
Hydrobiologia
, vol.614
, pp. 373-386
-
-
Poulíčková, A.1
Špačková, J.2
Kelly, M.3
Duchoslav, M.4
Mann, D.5
-
68
-
-
84926448700
-
-
Accessed 2013.
-
ProjectR- The Comprehensive R Archive Network. Available: http://cran.r-project.org. Accessed 2013.
-
-
-
-
69
-
-
0036106198
-
Determination of the biological diatom index (IBD NF T 90-354): results of an intercomparison exercise
-
Prygiel J, Carpentier P, Almeida S et al. (2002) Determination of the biological diatom index (IBD NF T 90-354): results of an intercomparison exercise. Journal of Applied Phycology, 14, 27-39.
-
(2002)
Journal of Applied Phycology
, vol.14
, pp. 27-39
-
-
Prygiel, J.1
Carpentier, P.2
Almeida, S.3
-
70
-
-
79251565226
-
Removing noise from pyrosequenced amplicons
-
Quince C, Lanzen A, Davenport RJ, Turnbaugh PJ (2011) Removing noise from pyrosequenced amplicons. BMC Bioinformatics, 12, 38.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 38
-
-
Quince, C.1
Lanzen, A.2
Davenport, R.J.3
Turnbaugh, P.J.4
-
71
-
-
37349085210
-
Character-based DNA barcoding allows discrimination of genera, species and populations in Odonata
-
Rach J, DeSalle R, Sarkar IN, Schierwater B, Hadrys H (2008) Character-based DNA barcoding allows discrimination of genera, species and populations in Odonata. Proceedings of the Royal Society B: Biological Sciences, 275, 237-247.
-
(2008)
Proceedings of the Royal Society B: Biological Sciences
, vol.275
, pp. 237-247
-
-
Rach, J.1
DeSalle, R.2
Sarkar, I.N.3
Schierwater, B.4
Hadrys, H.5
-
72
-
-
34248149943
-
BOLD: the Barcode of Life Data System
-
Ratnasingham S, Hebert PDN (2007) BOLD: the Barcode of Life Data System (http://www.barcodinglife.org). Molecular Ecology Notes 7, 355-364.
-
(2007)
Molecular Ecology Notes
, vol.7
, pp. 355-364
-
-
Ratnasingham, S.1
Hebert, P.D.N.2
-
73
-
-
80053096992
-
Origin and evolution of the canal raphe system in diatoms
-
Ruck EC, Theriot EC (2011) Origin and evolution of the canal raphe system in diatoms. Protist, 162, 723-737.
-
(2011)
Protist
, vol.162
, pp. 723-737
-
-
Ruck, E.C.1
Theriot, E.C.2
-
74
-
-
0023375195
-
The neighbor-joining method: a new method for reconstructing phylogenetic trees
-
Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution, 4, 406-425.
-
(1987)
Molecular Biology and Evolution
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
76
-
-
84859625932
-
Next-generation sequencing technologies for environmental DNA research
-
Shokralla S, Spall J, Gibson J, Hajibabaei M (2012) Next-generation sequencing technologies for environmental DNA research. Molecular Ecology, 21, 1794-1805.
-
(2012)
Molecular Ecology
, vol.21
, pp. 1794-1805
-
-
Shokralla, S.1
Spall, J.2
Gibson, J.3
Hajibabaei, M.4
-
77
-
-
0033084570
-
Diatoms and the ocean carbon cycle
-
Smetacek V (1999) Diatoms and the ocean carbon cycle. Protist, 150, 25-32.
-
(1999)
Protist
, vol.150
, pp. 25-32
-
-
Smetacek, V.1
-
79
-
-
0002365127
-
Assessing ecological conditions in rivers and streams with diatoms
-
In: (eds Stoermer E. P. & Smol J. P.) - Cambridge University Press, Cambridge
-
Spaulding SA, McKnight DM (1999) Assessing ecological conditions in rivers and streams with diatoms. In: The diatoms: Applications to the environmental and earth sciences(eds Stoermer E. P. & Smol J. P.), pp. 245-260. Cambridge University Press, Cambridge.
-
(1999)
The diatoms: Applications to the environmental and earth sciences
, pp. 245-260
-
-
Spaulding, S.A.1
McKnight, D.M.2
-
80
-
-
0001973561
-
Assessing ecological conditions in rivers and streams with diatoms
-
In: (eds Stoermer E. P. & Smol J. P.) - Cambridge University Press, Cambridge
-
Stevenson RJ, Pan Y (1999) Assessing ecological conditions in rivers and streams with diatoms. In: The diatoms: Applications to the environmental and earth sciences(eds Stoermer E. P. & Smol J. P.), pp. 11-40. Cambridge University Press, Cambridge.
-
(1999)
The diatoms: Applications to the environmental and earth sciences
, pp. 11-40
-
-
Stevenson, R.J.1
Pan, Y.2
-
81
-
-
70749095743
-
Massively parallel tag sequencing reveals the complexity of anaerobic marine protistan communities
-
Stoeck T, Behnke A, Christen R et al. (2009) Massively parallel tag sequencing reveals the complexity of anaerobic marine protistan communities. BMC Biology, 7, 72.
-
(2009)
BMC Biology
, vol.7
, pp. 72
-
-
Stoeck, T.1
Behnke, A.2
Christen, R.3
-
82
-
-
0141793707
-
Taxonomy, DNA and the barcode of life
-
Stoeckle M (2003) Taxonomy, DNA and the barcode of life. BioScience, 53, 2-3.
-
(2003)
BioScience
, vol.53
, pp. 2-3
-
-
Stoeckle, M.1
-
83
-
-
84859576222
-
Hidden diversity in diatoms of Kenyan Lake Naivasha: a genetic approach detects temporal variation
-
Stoof-Leichsenring KR, Epp LS, Trauth MH, Tiedemann R (2012) Hidden diversity in diatoms of Kenyan Lake Naivasha: a genetic approach detects temporal variation. Molecular Ecology, 21, 1918-1930.
-
(2012)
Molecular Ecology
, vol.21
, pp. 1918-1930
-
-
Stoof-Leichsenring, K.R.1
Epp, L.S.2
Trauth, M.H.3
Tiedemann, R.4
-
85
-
-
84859590042
-
Environmental DNA
-
Taberlet P, Coissac E, Hajibabaei M, Rieseberg L (2012a) Environmental DNA. Molecular Ecology, 21, 1789-1793.
-
(2012)
Molecular Ecology
, vol.21
, pp. 1789-1793
-
-
Taberlet, P.1
Coissac, E.2
Hajibabaei, M.3
Rieseberg, L.4
-
86
-
-
84859598363
-
Towards next-generation biodiversity assessment using DNA metabarcoding
-
Taberlet P, Coissac E, Pompanon F, Brochmann C, Willerslev E (2012b) Towards next-generation biodiversity assessment using DNA metabarcoding. Molecular Ecology, 21, 2045-2050.
-
(2012)
Molecular Ecology
, vol.21
, pp. 2045-2050
-
-
Taberlet, P.1
Coissac, E.2
Pompanon, F.3
Brochmann, C.4
Willerslev, E.5
-
87
-
-
84859598756
-
Soil sampling and isolation of extracellular DNA from large amount of starting material suitable for metabarcoding studies
-
Taberlet P, Prud'homme S, Campione E et al. (2012c) Soil sampling and isolation of extracellular DNA from large amount of starting material suitable for metabarcoding studies. Molecular Ecology, 21, 1816-1820.
-
(2012)
Molecular Ecology
, vol.21
, pp. 1816-1820
-
-
Taberlet, P.1
Prud'homme, S.2
Campione, E.3
-
88
-
-
79957613599
-
MEGA5: Molecular Evolutionary Genetics Analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura K, Peterson D, Peterson N et al. (2011) MEGA5: Molecular Evolutionary Genetics Analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution, 28, 2731-2739.
-
(2011)
Molecular Biology and Evolution
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
-
89
-
-
79551509328
-
A preliminary multigene phylogeny of the diatoms (Bacillariophyta): challenges for future research
-
Theriot EC, Ashworth M, Ruck E, Nakov T, Jansen RK (2010) A preliminary multigene phylogeny of the diatoms (Bacillariophyta): challenges for future research. Plant Ecology and Evolution, 143, 278-296.
-
(2010)
Plant Ecology and Evolution
, vol.143
, pp. 278-296
-
-
Theriot, E.C.1
Ashworth, M.2
Ruck, E.3
Nakov, T.4
Jansen, R.K.5
-
90
-
-
84863764544
-
High-coverage ITS primers for the DNA-based identification of ascomycetes and basidiomycetes in environmental samples
-
Toju H, Tanabe AS, Yamamoto S, Sato H (2012) High-coverage ITS primers for the DNA-based identification of ascomycetes and basidiomycetes in environmental samples. PLoS ONE, 7, e40863.
-
(2012)
PLoS ONE
, vol.7
, pp. e40863
-
-
Toju, H.1
Tanabe, A.S.2
Yamamoto, S.3
Sato, H.4
-
91
-
-
84864756214
-
The use of partial cox1, rbcL and LSU rDNA sequences for phylogenetics and species identification within the Nitzschia palea species complex (Bacillariophyceae)
-
Trobajo R, Mann DG, Clavero E et al. (2010) The use of partial cox1, rbcL and LSU rDNA sequences for phylogenetics and species identification within the Nitzschia palea species complex (Bacillariophyceae). European Journal of Phycology, 45, 413-425.
-
(2010)
European Journal of Phycology
, vol.45
, pp. 413-425
-
-
Trobajo, R.1
Mann, D.G.2
Clavero, E.3
-
92
-
-
73349120929
-
Ecological differantiation between sympatric pseudocryptic species in the estuarine benthic diatom Navicula phyllepta (Bacillariophyceae)
-
Vanelslander B, Créach V, Vanormelingen P et al. (2009) Ecological differantiation between sympatric pseudocryptic species in the estuarine benthic diatom Navicula phyllepta (Bacillariophyceae). Journal of Phycology, 45, 1278-1289.
-
(2009)
Journal of Phycology
, vol.45
, pp. 1278-1289
-
-
Vanelslander, B.1
Créach, V.2
Vanormelingen, P.3
-
93
-
-
84880095330
-
The ultrastructure of Gomphonema augur and Gomphonema gautieri (Bacillariophyta)
-
Vijver BVD, Jarlman A, Haan MD, Compere P (2013) The ultrastructure of Gomphonema augur and Gomphonema gautieri (Bacillariophyta). Cryptogamie, Algologie, 34, 103-116.
-
(2013)
Cryptogamie, Algologie
, vol.34
, pp. 103-116
-
-
Vijver, B.V.D.1
Jarlman, A.2
Haan, M.D.3
Compere, P.4
-
95
-
-
79960862758
-
When species matches are unavailable are DNA barcodes correctly assigned to higher taxa? An assessment using sphingid moths
-
Wilson J, Rougerie R, Schonfeld J et al. (2011) When species matches are unavailable are DNA barcodes correctly assigned to higher taxa? An assessment using sphingid moths. BMC Ecology, 11, 18.
-
(2011)
BMC Ecology
, vol.11
, pp. 18
-
-
Wilson, J.1
Rougerie, R.2
Schonfeld, J.3
-
96
-
-
84859588806
-
The future of environmental DNA in ecology
-
Yoccoz NG (2012) The future of environmental DNA in ecology. Molecular Ecology, 21, 2031-2038.
-
(2012)
Molecular Ecology
, vol.21
, pp. 2031-2038
-
-
Yoccoz, N.G.1
-
97
-
-
70449124645
-
Development of a diatom index of biotic integrity for acid mine drainage impacted streams
-
Zalack JT, Smucker NJ, Vis ML (2010) Development of a diatom index of biotic integrity for acid mine drainage impacted streams. Ecological Indicators, 10, 287-295.
-
(2010)
Ecological Indicators
, vol.10
, pp. 287-295
-
-
Zalack, J.T.1
Smucker, N.J.2
Vis, M.L.3
-
99
-
-
81355143738
-
Barcoding diatoms: evaluation of the V4 subregion on the 18S rRNA gene, including new primers and protocols
-
Zimmermann J, Jahn R, Gemeinholzer B (2011) Barcoding diatoms: evaluation of the V4 subregion on the 18S rRNA gene, including new primers and protocols. Organisms Diversity & Evolution, 11, 173-192.
-
(2011)
Organisms Diversity & Evolution
, vol.11
, pp. 173-192
-
-
Zimmermann, J.1
Jahn, R.2
Gemeinholzer, B.3
-
100
-
-
84934757087
-
Taxonomic reference libraries for environmental barcoding: a best practice example from diatom research
-
Zimmermann J, Abarca N, Enke N et al. (2014) Taxonomic reference libraries for environmental barcoding: a best practice example from diatom research. PLoS ONE, 9, e108793.
-
(2014)
PLoS ONE
, vol.9
, pp. e108793
-
-
Zimmermann, J.1
Abarca, N.2
Enke, N.3
-
101
-
-
84859605159
-
Two decades of describing the unseen majority of aquatic microbial diversity
-
Zinger L, Gobet A, Pommier T (2012) Two decades of describing the unseen majority of aquatic microbial diversity. Molecular Ecology, 21, 1878-1896.
-
(2012)
Molecular Ecology
, vol.21
, pp. 1878-1896
-
-
Zinger, L.1
Gobet, A.2
Pommier, T.3
|