-
1
-
-
0038342438
-
Unique gene expression profiles of human macrophages and dendritic cells to phylogenetically distinct parasites
-
Chaussabel D, Semnani RT, McDowell MA, Sacks D, Sher A, et al. Unique gene expression profiles of human macrophages and dendritic cells to phylogenetically distinct parasites. Blood 2003;102: 672–681. 12663451
-
(2003)
Blood
, vol.102
, pp. 672-681
-
-
Chaussabel, D.1
Semnani, R.T.2
McDowell, M.A.3
Sacks, D.4
Sher, A.5
-
2
-
-
0035955425
-
The plasticity of dendritic cell responses to pathogens and their components
-
Huang Q, Liu D, Majewski P, Schulte LC, Korn JM, et al. The plasticity of dendritic cell responses to pathogens and their components. Science 2001;294: 870–875. 11679675
-
(2001)
Science
, vol.294
, pp. 870-875
-
-
Huang, Q.1
Liu, D.2
Majewski, P.3
Schulte, L.C.4
Korn, J.M.5
-
3
-
-
81055129618
-
Systematic discovery of TLR signaling components delineates viral-sensing circuits
-
Chevrier N, Mertins P, Artyomov MN, Shalek AK, Iannacone M, et al. Systematic discovery of TLR signaling components delineates viral-sensing circuits. Cell 2011;147: 853–867. doi: 10.1016/j.cell.2011.10.022 22078882
-
(2011)
Cell
, vol.147
, pp. 853-867
-
-
Chevrier, N.1
Mertins, P.2
Artyomov, M.N.3
Shalek, A.K.4
Iannacone, M.5
-
4
-
-
84896742056
-
Innate immune activity conditions the effect of regulatory variants upon monocyte gene expression
-
Fairfax BP, Humburg P, Makino S, Naranbhai V, Wong D, et al. Innate immune activity conditions the effect of regulatory variants upon monocyte gene expression. Science 2014;343: 1246949. doi: 10.1126/science.1246949 24604202
-
(2014)
Science
, vol.343
, pp. 1246949
-
-
Fairfax, B.P.1
Humburg, P.2
Makino, S.3
Naranbhai, V.4
Wong, D.5
-
5
-
-
84877266456
-
Deciphering molecular circuits from genetic variation underlying transcriptional responsiveness to stimuli
-
Gat-Viks I, Chevrier N, Wilentzik R, Eisenhaure T, Raychowdhury R, et al. Deciphering molecular circuits from genetic variation underlying transcriptional responsiveness to stimuli. Nat Biotechnol 2013;31: 342–349. doi: 10.1038/nbt.2519 23503680
-
(2013)
Nat Biotechnol
, vol.31
, pp. 342-349
-
-
Gat-Viks, I.1
Chevrier, N.2
Wilentzik, R.3
Eisenhaure, T.4
Raychowdhury, R.5
-
6
-
-
84896759364
-
Common genetic variants modulate pathogen-sensing responses in human dendritic cells
-
Lee MN, Ye C, Villani AC, Raj T, Li W, et al. Common genetic variants modulate pathogen-sensing responses in human dendritic cells. Science 2014;343: 1246980. doi: 10.1126/science.1246980 24604203
-
(2014)
Science
, vol.343
, pp. 1246980
-
-
Lee, M.N.1
Ye, C.2
Villani, A.C.3
Raj, T.4
Li, W.5
-
7
-
-
0347444723
-
MicroRNAs: genomics, biogenesis, mechanism, and function
-
Bartel DP, MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 2004;116: 281–297. 14744438
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
8
-
-
78751477191
-
Gene silencing by microRNAs: contributions of translational repression and mRNA decay
-
Huntzinger E, Izaurralde E, Gene silencing by microRNAs: contributions of translational repression and mRNA decay. Nat Rev Genet 2011;12: 99–110. doi: 10.1038/nrg2936 21245828
-
(2011)
Nat Rev Genet
, vol.12
, pp. 99-110
-
-
Huntzinger, E.1
Izaurralde, E.2
-
9
-
-
60149095444
-
Most mammalian mRNAs are conserved targets of microRNAs
-
Friedman RC, Farh KK, Burge CB, Bartel DP, Most mammalian mRNAs are conserved targets of microRNAs. Genome Res 2009;19: 92–105. doi: 10.1101/gr.082701.108 18955434
-
(2009)
Genome Res
, vol.19
, pp. 92-105
-
-
Friedman, R.C.1
Farh, K.K.2
Burge, C.B.3
Bartel, D.P.4
-
10
-
-
0346727524
-
MicroRNAs modulate hematopoietic lineage differentiation
-
Chen CZ, Li L, Lodish HF, Bartel DP, MicroRNAs modulate hematopoietic lineage differentiation. Science 2004;303: 83–86. 14657504
-
(2004)
Science
, vol.303
, pp. 83-86
-
-
Chen, C.Z.1
Li, L.2
Lodish, H.F.3
Bartel, D.P.4
-
11
-
-
39849096995
-
Regulation of progenitor cell proliferation and granulocyte function by microRNA-223
-
Johnnidis JB, Harris MH, Wheeler RT, Stehling-Sun S, Lam MH, et al. Regulation of progenitor cell proliferation and granulocyte function by microRNA-223. Nature 2008;451: 1125–1129. doi: 10.1038/nature06607 18278031
-
(2008)
Nature
, vol.451
, pp. 1125-1129
-
-
Johnnidis, J.B.1
Harris, M.H.2
Wheeler, R.T.3
Stehling-Sun, S.4
Lam, M.H.5
-
12
-
-
84859382730
-
microRNA regulation of inflammatory responses
-
O'Connell RM, Rao DS, Baltimore D, microRNA regulation of inflammatory responses. Annu Rev Immunol 2012;30: 295–312. doi: 10.1146/annurev-immunol-020711-075013 22224773
-
(2012)
Annu Rev Immunol
, vol.30
, pp. 295-312
-
-
O'Connell, R.M.1
Rao, D.S.2
Baltimore, D.3
-
13
-
-
38549095711
-
Micromanagement of the immune system by microRNAs
-
Lodish HF, Zhou B, Liu G, Chen CZ, Micromanagement of the immune system by microRNAs. Nat Rev Immunol 2008;8: 120–130. doi: 10.1038/nri2252 18204468
-
(2008)
Nat Rev Immunol
, vol.8
, pp. 120-130
-
-
Lodish, H.F.1
Zhou, B.2
Liu, G.3
Chen, C.Z.4
-
14
-
-
75649139134
-
Physiological and pathological roles for microRNAs in the immune system
-
O'Connell RM, Rao DS, Chaudhuri AA, Baltimore D, Physiological and pathological roles for microRNAs in the immune system. Nat Rev Immunol 2010;10: 111–122. doi: 10.1038/nri2708 20098459
-
(2010)
Nat Rev Immunol
, vol.10
, pp. 111-122
-
-
O'Connell, R.M.1
Rao, D.S.2
Chaudhuri, A.A.3
Baltimore, D.4
-
15
-
-
80052972172
-
Viruses and microRNAs: RISCy interactions with serious consequences
-
Cullen BR, Viruses and microRNAs: RISCy interactions with serious consequences. Genes Dev 2011;25: 1881–1894. doi: 10.1101/gad.17352611 21896651
-
(2011)
Genes Dev
, vol.25
, pp. 1881-1894
-
-
Cullen, B.R.1
-
16
-
-
84863430273
-
The mammalian microRNA response to bacterial infections
-
Eulalio A, Schulte L, Vogel J, The mammalian microRNA response to bacterial infections. RNA Biol 2012;9: 742–750. doi: 10.4161/rna.20018 22664920
-
(2012)
RNA Biol
, vol.9
, pp. 742-750
-
-
Eulalio, A.1
Schulte, L.2
Vogel, J.3
-
17
-
-
33750370444
-
MicroRNA signatures in human cancers
-
Calin GA, Croce CM, MicroRNA signatures in human cancers. Nat Rev Cancer 2006;6: 857–866. 17060945
-
(2006)
Nat Rev Cancer
, vol.6
, pp. 857-866
-
-
Calin, G.A.1
Croce, C.M.2
-
18
-
-
70349320158
-
Causes and consequences of microRNA dysregulation in cancer
-
Croce CM, Causes and consequences of microRNA dysregulation in cancer. Nat Rev Genet 2009;10: 704–714. doi: 10.1038/nrg2634 19763153
-
(2009)
Nat Rev Genet
, vol.10
, pp. 704-714
-
-
Croce, C.M.1
-
19
-
-
61849137222
-
Many roads to maturity: microRNA biogenesis pathways and their regulation
-
Winter J, Jung S, Keller S, Gregory RI, Diederichs S, Many roads to maturity: microRNA biogenesis pathways and their regulation. Nat Cell Biol 2009;11: 228–234. doi: 10.1038/ncb0309-228 19255566
-
(2009)
Nat Cell Biol
, vol.11
, pp. 228-234
-
-
Winter, J.1
Jung, S.2
Keller, S.3
Gregory, R.I.4
Diederichs, S.5
-
20
-
-
80052996141
-
Alternative miRNA biogenesis pathways and the interpretation of core miRNA pathway mutants
-
Yang JS, Lai EC, Alternative miRNA biogenesis pathways and the interpretation of core miRNA pathway mutants. Mol Cell 2011;43: 892–903. doi: 10.1016/j.molcel.2011.07.024 21925378
-
(2011)
Mol Cell
, vol.43
, pp. 892-903
-
-
Yang, J.S.1
Lai, E.C.2
-
21
-
-
69249147045
-
Expression profiling of microRNAs by deep sequencing
-
Creighton CJ, Reid JG, Gunaratne PH, Expression profiling of microRNAs by deep sequencing. Brief Bioinform 2009;10: 490–497. doi: 10.1093/bib/bbp019 19332473
-
(2009)
Brief Bioinform
, vol.10
, pp. 490-497
-
-
Creighton, C.J.1
Reid, J.G.2
Gunaratne, P.H.3
-
22
-
-
79551585173
-
MicroRNA evolution by arm switching
-
Griffiths-Jones S, Hui JH, Marco A, Ronshaugen M, MicroRNA evolution by arm switching. EMBO Rep 2011;12: 172–177. doi: 10.1038/embor.2010.191 21212805
-
(2011)
EMBO Rep
, vol.12
, pp. 172-177
-
-
Griffiths-Jones, S.1
Hui, J.H.2
Marco, A.3
Ronshaugen, M.4
-
23
-
-
77955902024
-
The widespread regulation of microRNA biogenesis, function and decay
-
Krol J, Loedige I, Filipowicz W, The widespread regulation of microRNA biogenesis, function and decay. Nat Rev Genet 2010;11: 597–610. doi: 10.1038/nrg2843 20661255
-
(2010)
Nat Rev Genet
, vol.11
, pp. 597-610
-
-
Krol, J.1
Loedige, I.2
Filipowicz, W.3
-
24
-
-
0142165224
-
Functional siRNAs and miRNAs exhibit strand bias
-
Khvorova A, Reynolds A, Jayasena SD, Functional siRNAs and miRNAs exhibit strand bias. Cell 2003;115: 209–216. 14567918
-
(2003)
Cell
, vol.115
, pp. 209-216
-
-
Khvorova, A.1
Reynolds, A.2
Jayasena, S.D.3
-
25
-
-
10744225153
-
Asymmetry in the assembly of the RNAi enzyme complex
-
Schwarz DS, Hutvagner G, Du T, Xu Z, Aronin N, et al. Asymmetry in the assembly of the RNAi enzyme complex. Cell 2003;115: 199–208. 14567917
-
(2003)
Cell
, vol.115
, pp. 199-208
-
-
Schwarz, D.S.1
Hutvagner, G.2
Du, T.3
Xu, Z.4
Aronin, N.5
-
26
-
-
84878802380
-
Comprehensive analysis of microRNAs in breast cancer
-
Chang HT, Li SC, Ho MR, Pan HW, Ger LP, et al. Comprehensive analysis of microRNAs in breast cancer. BMC Genomics 2012;13 Suppl 7: S18. doi: 10.1186/1471-2164-13-S7-S18 23281739
-
(2012)
BMC Genomics
, vol.13
, pp. 18
-
-
Chang, H.T.1
Li, S.C.2
Ho, M.R.3
Pan, H.W.4
Ger, L.P.5
-
27
-
-
77952368550
-
Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
-
Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, et al. Mammalian microRNAs: experimental evaluation of novel and previously annotated genes. Genes Dev 2010;24: 992–1009. doi: 10.1101/gad.1884710 20413612
-
(2010)
Genes Dev
, vol.24
, pp. 992-1009
-
-
Chiang, H.R.1
Schoenfeld, L.W.2
Ruby, J.G.3
Auyeung, V.C.4
Spies, N.5
-
28
-
-
84855168259
-
MicroRNAs and their isomiRs function cooperatively to target common biological pathways
-
Cloonan N, Wani S, Xu Q, Gu J, Lea K, et al. MicroRNAs and their isomiRs function cooperatively to target common biological pathways. Genome Biol 2011;12: R126. doi: 10.1186/gb-2011-12-12-r126 22208850
-
(2011)
Genome Biol
, vol.12
, pp. 126
-
-
Cloonan, N.1
Wani, S.2
Xu, Q.3
Gu, J.4
Lea, K.5
-
29
-
-
77349092849
-
Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development
-
Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, et al. Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development. BMC Genomics 2010;11: 52. doi: 10.1186/1471-2164-11-52 20089182
-
(2010)
BMC Genomics
, vol.11
, pp. 52
-
-
Jagadeeswaran, G.1
Zheng, Y.2
Sumathipala, N.3
Jiang, H.4
Arrese, E.L.5
-
30
-
-
84862262444
-
miRNA arm selection and isomiR distribution in gastric cancer
-
Li SC, Liao YL, Ho MR, Tsai KW, Lai CH, et al. miRNA arm selection and isomiR distribution in gastric cancer. BMC Genomics 2012;13 Suppl 1: S13. doi: 10.1186/1471-2164-13-S1-S13 22369582
-
(2012)
BMC Genomics
, vol.13
, pp. 13
-
-
Li, S.C.1
Liao, Y.L.2
Ho, M.R.3
Tsai, K.W.4
Lai, C.H.5
-
31
-
-
77958474656
-
Functional shifts in insect microRNA evolution
-
Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S, Functional shifts in insect microRNA evolution. Genome Biol Evol 2010;2: 686–696. doi: 10.1093/gbe/evq053 20817720
-
(2010)
Genome Biol Evol
, vol.2
, pp. 686-696
-
-
Marco, A.1
Hui, J.H.2
Ronshaugen, M.3
Griffiths-Jones, S.4
-
32
-
-
84880770383
-
Diversifying microRNA sequence and function
-
Ameres SL, Zamore PD, Diversifying microRNA sequence and function. Nat Rev Mol Cell Biol 2013;14: 475–488. doi: 10.1038/nrm3611 23800994
-
(2013)
Nat Rev Mol Cell Biol
, vol.14
, pp. 475-488
-
-
Ameres, S.L.1
Zamore, P.D.2
-
33
-
-
44849106063
-
A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
-
Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, et al. A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach. Genome Res 2008;18: 957–964. doi: 10.1101/gr.074740.107 18469162
-
(2008)
Genome Res
, vol.18
, pp. 957-964
-
-
Glazov, E.A.1
Cottee, P.A.2
Barris, W.C.3
Moore, R.J.4
Dalrymple, B.P.5
-
34
-
-
41649106136
-
Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
-
Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, et al. Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. Genome Res 2008;18: 610–621. doi: 10.1101/gr.7179508 18285502
-
(2008)
Genome Res
, vol.18
, pp. 610-621
-
-
Morin, R.D.1
O'Connor, M.D.2
Griffith, M.3
Kuchenbauer, F.4
Delaney, A.5
-
35
-
-
77957312307
-
Dynamic isomiR regulation in Drosophila development
-
Fernandez-Valverde SL, Taft RJ, Mattick JS, Dynamic isomiR regulation in Drosophila development. RNA 2010;16: 1881–1888. doi: 10.1261/rna.2379610 20805289
-
(2010)
RNA
, vol.16
, pp. 1881-1888
-
-
Fernandez-Valverde, S.L.1
Taft, R.J.2
Mattick, J.S.3
-
36
-
-
78149332037
-
Complexity of the microRNA repertoire revealed by next-generation sequencing
-
Lee LW, Zhang S, Etheridge A, Ma L, Martin D, et al. Complexity of the microRNA repertoire revealed by next-generation sequencing. RNA 2010;16: 2170–2180. doi: 10.1261/rna.2225110 20876832
-
(2010)
RNA
, vol.16
, pp. 2170-2180
-
-
Lee, L.W.1
Zhang, S.2
Etheridge, A.3
Ma, L.4
Martin, D.5
-
37
-
-
84856551149
-
Complexity of murine cardiomyocyte miRNA biogenesis, sequence variant expression and function
-
Humphreys DT, Hynes CJ, Patel HR, Wei GH, Cannon L, et al. Complexity of murine cardiomyocyte miRNA biogenesis, sequence variant expression and function. PLoS One 2012;7: e30933. doi: 10.1371/journal.pone.0030933 22319597
-
(2012)
PLoS One
, vol.7
, pp. 30933
-
-
Humphreys, D.T.1
Hynes, C.J.2
Patel, H.R.3
Wei, G.H.4
Cannon, L.5
-
38
-
-
84878349081
-
Microarray and deep sequencing cross-platform analysis of the mirRNome and isomiR variation in response to epidermal growth factor
-
Llorens F, Hummel M, Pantano L, Pastor X, Vivancos A, et al. Microarray and deep sequencing cross-platform analysis of the mirRNome and isomiR variation in response to epidermal growth factor. BMC Genomics 2013;14: 371. doi: 10.1186/1471-2164-14-371 23724959
-
(2013)
BMC Genomics
, vol.14
, pp. 371
-
-
Llorens, F.1
Hummel, M.2
Pantano, L.3
Pastor, X.4
Vivancos, A.5
-
39
-
-
77958471215
-
A myriad of miRNA variants in control and Huntington's disease brain regions detected by massively parallel sequencing
-
Marti E, Pantano L, Banez-Coronel M, Llorens F, Minones-Moyano E, et al. A myriad of miRNA variants in control and Huntington's disease brain regions detected by massively parallel sequencing. Nucleic Acids Res 2010;38: 7219–7235. doi: 10.1093/nar/gkq575 20591823
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 7219-7235
-
-
Marti, E.1
Pantano, L.2
Banez-Coronel, M.3
Llorens, F.4
Minones-Moyano, E.5
-
40
-
-
84884627102
-
Analysis of the microRNA transcriptome and expression of different isomiRs in human peripheral blood mononuclear cells
-
Vaz C, Ahmad HM, Bharti R, Pandey P, Kumar L, et al. Analysis of the microRNA transcriptome and expression of different isomiRs in human peripheral blood mononuclear cells. BMC Res Notes 2013;6: 390. doi: 10.1186/1756-0500-6-390 24073671
-
(2013)
BMC Res Notes
, vol.6
, pp. 390
-
-
Vaz, C.1
Ahmad, H.M.2
Bharti, R.3
Pandey, P.4
Kumar, L.5
-
41
-
-
84864436656
-
Deep annotation of mouse iso-miR and iso-moR variation
-
Zhou H, Arcila ML, Li Z, Lee EJ, Henzler C, et al. Deep annotation of mouse iso-miR and iso-moR variation. Nucleic Acids Res 2012;40: 5864–5875. doi: 10.1093/nar/gks247 22434881
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 5864-5875
-
-
Zhou, H.1
Arcila, M.L.2
Li, Z.3
Lee, E.J.4
Henzler, C.5
-
43
-
-
82455186873
-
Circulating microRNAs in patients with active pulmonary tuberculosis
-
Fu Y, Yi Z, Wu X, Li J, Xu F, Circulating microRNAs in patients with active pulmonary tuberculosis. J Clin Microbiol 2011;49: 4246–4251. doi: 10.1128/JCM.05459-11 21998423
-
(2011)
J Clin Microbiol
, vol.49
, pp. 4246-4251
-
-
Fu, Y.1
Yi, Z.2
Wu, X.3
Li, J.4
Xu, F.5
-
44
-
-
84866313843
-
Identification of a novel role of ESAT-6-dependent miR-155 induction during infection of macrophages with Mycobacterium tuberculosis
-
Kumar R, Halder P, Sahu SK, Kumar M, Kumari M, et al. Identification of a novel role of ESAT-6-dependent miR-155 induction during infection of macrophages with Mycobacterium tuberculosis. Cell Microbiol 2012;14: 1620–1631. doi: 10.1111/j.1462-5822.2012.01827.x 22712528
-
(2012)
Cell Microbiol
, vol.14
, pp. 1620-1631
-
-
Kumar, R.1
Halder, P.2
Sahu, S.K.3
Kumar, M.4
Kumari, M.5
-
45
-
-
79954461556
-
Modulation of T cell cytokine production by miR-144* with elevated expression in patients with pulmonary tuberculosis
-
Liu Y, Wang X, Jiang J, Cao Z, Yang B, et al. Modulation of T cell cytokine production by miR-144* with elevated expression in patients with pulmonary tuberculosis. Mol Immunol 2011;48: 1084–1090. doi: 10.1016/j.molimm.2011.02.001 21367459
-
(2011)
Mol Immunol
, vol.48
, pp. 1084-1090
-
-
Liu, Y.1
Wang, X.2
Jiang, J.3
Cao, Z.4
Yang, B.5
-
46
-
-
80052033649
-
The microRNA miR-29 controls innate and adaptive immune responses to intracellular bacterial infection by targeting interferon-gamma
-
Ma F, Xu S, Liu X, Zhang Q, Xu X, et al. The microRNA miR-29 controls innate and adaptive immune responses to intracellular bacterial infection by targeting interferon-gamma. Nat Immunol 2011;12: 861–869. doi: 10.1038/ni.2073 21785411
-
(2011)
Nat Immunol
, vol.12
, pp. 861-869
-
-
Ma, F.1
Xu, S.2
Liu, X.3
Zhang, Q.4
Xu, X.5
-
47
-
-
84861035952
-
Common patterns and disease-related signatures in tuberculosis and sarcoidosis
-
Maertzdorf J, Weiner J, 3rdMollenkopf HJ, Bauer T, Prasse A, et al. Common patterns and disease-related signatures in tuberculosis and sarcoidosis. Proc Natl Acad Sci U S A 2012;109: 7853–7858. doi: 10.1073/pnas.1121072109 22547807
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 7853-7858
-
-
Maertzdorf, J.1
Weiner, J.2
Mollenkopf, H.J.3
Bauer, T.4
Prasse, A.5
-
48
-
-
80054810826
-
Mycobacterium tuberculosis lipomannan blocks TNF biosynthesis by regulating macrophage MAPK-activated protein kinase 2 (MK2) and microRNA miR-125b
-
Rajaram MV, Ni B, Morris JD, Brooks MN, Carlson TK, et al. Mycobacterium tuberculosis lipomannan blocks TNF biosynthesis by regulating macrophage MAPK-activated protein kinase 2 (MK2) and microRNA miR-125b. Proc Natl Acad Sci U S A 2011;108: 17408–17413. doi: 10.1073/pnas.1112660108 21969554
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 17408-17413
-
-
Rajaram, M.V.1
Ni, B.2
Morris, J.D.3
Brooks, M.N.4
Carlson, T.K.5
-
49
-
-
79956353001
-
Integrated microRNA-mRNA-analysis of human monocyte derived macrophages upon Mycobacterium avium subsp. hominissuis infection
-
Sharbati J, Lewin A, Kutz-Lohroff B, Kamal E, Einspanier R, et al. Integrated microRNA-mRNA-analysis of human monocyte derived macrophages upon Mycobacterium avium subsp. hominissuis infection. PLoS One 2011;6: e20258. doi: 10.1371/journal.pone.0020258 21629653
-
(2011)
PLoS One
, vol.6
, pp. 20258
-
-
Sharbati, J.1
Lewin, A.2
Kutz-Lohroff, B.3
Kamal, E.4
Einspanier, R.5
-
50
-
-
84874068498
-
Mycobacterium tuberculosis controls microRNA-99b (miR-99b) expression in infected murine dendritic cells to modulate host immunity
-
Singh Y, Kaul V, Mehra A, Chatterjee S, Tousif S, et al. Mycobacterium tuberculosis controls microRNA-99b (miR-99b) expression in infected murine dendritic cells to modulate host immunity. J Biol Chem 2013;288: 5056–5061. doi: 10.1074/jbc.C112.439778 23233675
-
(2013)
J Biol Chem
, vol.288
, pp. 5056-5061
-
-
Singh, Y.1
Kaul, V.2
Mehra, A.3
Chatterjee, S.4
Tousif, S.5
-
51
-
-
84865967843
-
Altered microRNA expression levels in mononuclear cells of patients with pulmonary and pleural tuberculosis and their relation with components of the immune response
-
Spinelli SV, Diaz A, D'Attilio L, Marchesini MM, Bogue C, et al. Altered microRNA expression levels in mononuclear cells of patients with pulmonary and pleural tuberculosis and their relation with components of the immune response. Mol Immunol 2013;53: 265–269. doi: 10.1016/j.molimm.2012.08.008 22964481
-
(2013)
Mol Immunol
, vol.53
, pp. 265-269
-
-
Spinelli, S.V.1
Diaz, A.2
D'Attilio, L.3
Marchesini, M.M.4
Bogue, C.5
-
52
-
-
80053931516
-
Comparative miRNA expression profiles in individuals with latent and active tuberculosis
-
Wang C, Yang S, Sun G, Tang X, Lu S, et al. Comparative miRNA expression profiles in individuals with latent and active tuberculosis. PLoS One 2011;6: e25832. doi: 10.1371/journal.pone.0025832 22003408
-
(2011)
PLoS One
, vol.6
, pp. 25832
-
-
Wang, C.1
Yang, S.2
Sun, G.3
Tang, X.4
Lu, S.5
-
53
-
-
84355162842
-
Analysis of microRNA expression profiling identifies miR-155 and miR-155* as potential diagnostic markers for active tuberculosis: a preliminary study
-
Wu J, Lu C, Diao N, Zhang S, Wang S, et al. Analysis of microRNA expression profiling identifies miR-155 and miR-155* as potential diagnostic markers for active tuberculosis: a preliminary study. Hum Immunol 2012;73: 31–37. doi: 10.1016/j.humimm.2011.10.003 22037148
-
(2012)
Hum Immunol
, vol.73
, pp. 31-37
-
-
Wu, J.1
Lu, C.2
Diao, N.3
Zhang, S.4
Wang, S.5
-
54
-
-
84864986016
-
Altered microRNA signatures in sputum of patients with active pulmonary tuberculosis
-
Yi Z, Fu Y, Ji R, Li R, Guan Z, Altered microRNA signatures in sputum of patients with active pulmonary tuberculosis. PLoS One 2012;7: e43184. doi: 10.1371/journal.pone.0043184 22900099
-
(2012)
PLoS One
, vol.7
, pp. 43184
-
-
Yi, Z.1
Fu, Y.2
Ji, R.3
Li, R.4
Guan, Z.5
-
55
-
-
84899827144
-
A genomic portrait of the genetic architecture and regulatory impact of microRNA expression in response to infection
-
Siddle KJ, Deschamps M, Tailleux L, Nedelec Y, Pothlichet J, et al. A genomic portrait of the genetic architecture and regulatory impact of microRNA expression in response to infection. Genome Res 2014;24: 850–859. doi: 10.1101/gr.161471.113 24482540
-
(2014)
Genome Res
, vol.24
, pp. 850-859
-
-
Siddle, K.J.1
Deschamps, M.2
Tailleux, L.3
Nedelec, Y.4
Pothlichet, J.5
-
56
-
-
84855293838
-
miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
-
Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N, miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades. Nucleic Acids Res 2012;40: 37–52. doi: 10.1093/nar/gkr688 21911355
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 37-52
-
-
Friedlander, M.R.1
Mackowiak, S.D.2
Li, N.3
Chen, W.4
Rajewsky, N.5
-
57
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders S, Huber W, Differential expression analysis for sequence count data. Genome Biol 2010;11: R106. doi: 10.1186/gb-2010-11-10-r106 20979621
-
(2010)
Genome Biol
, vol.11
, pp. 106
-
-
Anders, S.1
Huber, W.2
-
58
-
-
33646344978
-
STEM: a tool for the analysis of short time series gene expression data
-
Ernst J, Bar-Joseph Z, STEM: a tool for the analysis of short time series gene expression data. BMC Bioinformatics 2006;7: 191. 16597342
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 191
-
-
Ernst, J.1
Bar-Joseph, Z.2
-
59
-
-
28644452470
-
Clustering short time series gene expression data
-
Ernst J, Nau GJ, Bar-Joseph Z, Clustering short time series gene expression data. Bioinformatics 2005;21 Suppl 1: i159–168. 15961453
-
(2005)
Bioinformatics
, vol.21
, pp. 159-168
-
-
Ernst, J.1
Nau, G.J.2
Bar-Joseph, Z.3
-
60
-
-
78651307694
-
starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data
-
Yang JH, Li JH, Shao P, Zhou H, Chen YQ, et al. starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data. Nucleic Acids Res 2011;39: D202–209. doi: 10.1093/nar/gkq1056 21037263
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 202-209
-
-
Yang, J.H.1
Li, J.H.2
Shao, P.3
Zhou, H.4
Chen, Y.Q.5
-
61
-
-
40049099114
-
Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R
-
Langfelder P, Zhang B, Horvath S, Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R. Bioinformatics 2008;24: 719–720. 18024473
-
(2008)
Bioinformatics
, vol.24
, pp. 719-720
-
-
Langfelder, P.1
Zhang, B.2
Horvath, S.3
-
62
-
-
84876566914
-
ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data
-
Yang JH, Li JH, Jiang S, Zhou H, Qu LH, ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data. Nucleic Acids Res 2013;41: D177–187. doi: 10.1093/nar/gks1060 23161675
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 177-187
-
-
Yang, J.H.1
Li, J.H.2
Jiang, S.3
Zhou, H.4
Qu, L.H.5
-
63
-
-
84856387609
-
Deciphering the genetic architecture of variation in the immune response to Mycobacterium tuberculosis infection
-
Barreiro LB, Tailleux L, Pai AA, Gicquel B, Marioni JC, et al. Deciphering the genetic architecture of variation in the immune response to Mycobacterium tuberculosis infection. Proc Natl Acad Sci U S A 2012;109: 1204–1209. doi: 10.1073/pnas.1115761109 22233810
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 1204-1209
-
-
Barreiro, L.B.1
Tailleux, L.2
Pai, A.A.3
Gicquel, B.4
Marioni, J.C.5
-
64
-
-
25444476788
-
Yersinia outer proteins: role in modulation of host cell signaling responses and pathogenesis
-
Viboud GI, Bliska JB, Yersinia outer proteins: role in modulation of host cell signaling responses and pathogenesis. Annu Rev Microbiol 2005;59: 69–89. 15847602
-
(2005)
Annu Rev Microbiol
, vol.59
, pp. 69-89
-
-
Viboud, G.I.1
Bliska, J.B.2
-
65
-
-
84872722692
-
Regulation of TLR2-mediated tolerance and cross-tolerance through IRAK4 modulation by miR-132 and miR-212
-
Nahid MA, Yao B, Dominguez-Gutierrez PR, Kesavalu L, Satoh M, et al. Regulation of TLR2-mediated tolerance and cross-tolerance through IRAK4 modulation by miR-132 and miR-212. J Immunol 2013;190: 1250–1263. doi: 10.4049/jimmunol.1103060 23264652
-
(2013)
J Immunol
, vol.190
, pp. 1250-1263
-
-
Nahid, M.A.1
Yao, B.2
Dominguez-Gutierrez, P.R.3
Kesavalu, L.4
Satoh, M.5
-
66
-
-
0036437048
-
Loss of RD1 contributed to the attenuation of the live tuberculosis vaccines Mycobacterium bovis BCG and Mycobacterium microti
-
Pym AS, Brodin P, Brosch R, Huerre M, Cole ST, Loss of RD1 contributed to the attenuation of the live tuberculosis vaccines Mycobacterium bovis BCG and Mycobacterium microti. Mol Microbiol 2002;46: 709–717. 12410828
-
(2002)
Mol Microbiol
, vol.46
, pp. 709-717
-
-
Pym, A.S.1
Brodin, P.2
Brosch, R.3
Huerre, M.4
Cole, S.T.5
-
67
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
-
Lewis BP, Burge CB, Bartel DP, Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 2005;120: 15–20. 15652477
-
(2005)
Cell
, vol.120
, pp. 15-20
-
-
Lewis, B.P.1
Burge, C.B.2
Bartel, D.P.3
-
68
-
-
54049156472
-
Control of cell proliferation pathways by microRNAs
-
Bueno MJ, Perez de Castro I, Malumbres M, Control of cell proliferation pathways by microRNAs. Cell Cycle 2008;7: 3143–3148. 18843198
-
(2008)
Cell Cycle
, vol.7
, pp. 3143-3148
-
-
Bueno, M.J.1
Perez de Castro, I.2
Malumbres, M.3
-
69
-
-
84867981278
-
Pathogenesis of Y. enterocolitica and Y. pseudotuberculosis in Human Yersiniosis
-
Galindo CL, Rosenzweig JA, Kirtley ML, Chopra AK, Pathogenesis of Y. enterocolitica and Y. pseudotuberculosis in Human Yersiniosis. J Pathog 2011;2011: 182051. doi: 10.4061/2011/182051 22567322
-
(2011)
J Pathog
, vol.2011
, pp. 182051
-
-
Galindo, C.L.1
Rosenzweig, J.A.2
Kirtley, M.L.3
Chopra, A.K.4
-
70
-
-
0141688292
-
DC-SIGN: escape mechanism for pathogens
-
van Kooyk Y, Geijtenbeek TB, DC-SIGN: escape mechanism for pathogens. Nat Rev Immunol 2003;3: 697–709. 12949494
-
(2003)
Nat Rev Immunol
, vol.3
, pp. 697-709
-
-
van Kooyk, Y.1
Geijtenbeek, T.B.2
-
71
-
-
15944395145
-
Insights into host responses against pathogens from transcriptional profiling
-
Jenner RG, Young RA, Insights into host responses against pathogens from transcriptional profiling. Nat Rev Microbiol 2005;3: 281–294. 15806094
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 281-294
-
-
Jenner, R.G.1
Young, R.A.2
-
72
-
-
70349882120
-
Unbiased reconstruction of a mammalian transcriptional network mediating pathogen responses
-
Amit I, Garber M, Chevrier N, Leite AP, Donner Y, et al. Unbiased reconstruction of a mammalian transcriptional network mediating pathogen responses. Science 2009;326: 257–263. doi: 10.1126/science.1179050 19729616
-
(2009)
Science
, vol.326
, pp. 257-263
-
-
Amit, I.1
Garber, M.2
Chevrier, N.3
Leite, A.P.4
Donner, Y.5
-
73
-
-
84897533708
-
MicroRNAs: new regulators of Toll-like receptor signalling pathways
-
He X, Jing Z, Cheng G, MicroRNAs: new regulators of Toll-like receptor signalling pathways. Biomed Res Int 2014;2014: 945169. doi: 10.1155/2014/945169 24772440
-
(2014)
Biomed Res Int
, vol.2014
, pp. 945169
-
-
He, X.1
Jing, Z.2
Cheng, G.3
-
74
-
-
79952186298
-
MicroRNAs: the fine-tuners of Toll-like receptor signalling
-
O'Neill LA, Sheedy FJ, McCoy CE, MicroRNAs: the fine-tuners of Toll-like receptor signalling. Nat Rev Immunol 2011;11: 163–175. doi: 10.1038/nri2957 21331081
-
(2011)
Nat Rev Immunol
, vol.11
, pp. 163-175
-
-
O'Neill, L.A.1
Sheedy, F.J.2
McCoy, C.E.3
-
75
-
-
84875769575
-
Regulation of immune responses and tolerance: the microRNA perspective
-
Chen CZ, Schaffert S, Fragoso R, Loh C, Regulation of immune responses and tolerance: the microRNA perspective. Immunol Rev 2013;253: 112–128. doi: 10.1111/imr.12060 23550642
-
(2013)
Immunol Rev
, vol.253
, pp. 112-128
-
-
Chen, C.Z.1
Schaffert, S.2
Fragoso, R.3
Loh, C.4
-
76
-
-
84872196963
-
MicroRNAs in the regulation of TLR and RIG-I pathways
-
Li Y, Shi X, MicroRNAs in the regulation of TLR and RIG-I pathways. Cell Mol Immunol 2013;10: 65–71. doi: 10.1038/cmi.2012.55 23262976
-
(2013)
Cell Mol Immunol
, vol.10
, pp. 65-71
-
-
Li, Y.1
Shi, X.2
-
77
-
-
74049088856
-
Lost in translation: an assessment and perspective for computational microRNA target identification
-
Alexiou P, Maragkakis M, Papadopoulos GL, Reczko M, Hatzigeorgiou AG, Lost in translation: an assessment and perspective for computational microRNA target identification. Bioinformatics 2009;25: 3049–3055. doi: 10.1093/bioinformatics/btp565 19789267
-
(2009)
Bioinformatics
, vol.25
, pp. 3049-3055
-
-
Alexiou, P.1
Maragkakis, M.2
Papadopoulos, G.L.3
Reczko, M.4
Hatzigeorgiou, A.G.5
-
78
-
-
84885680575
-
MicroRNA Target Identification-Experimental Approaches
-
Martinez-Sanchez A, Murphy CL, MicroRNA Target Identification-Experimental Approaches. Biology (Basel) 2013;2: 189–205. doi: 10.3390/biology2010189 24832658
-
(2013)
Biology (Basel)
, vol.2
, pp. 189-205
-
-
Martinez-Sanchez, A.1
Murphy, C.L.2
-
79
-
-
40349106159
-
Control of M. tuberculosis ESAT-6 secretion and specific T cell recognition by PhoP
-
Frigui W, Bottai D, Majlessi L, Monot M, Josselin E, et al. Control of M. tuberculosis ESAT-6 secretion and specific T cell recognition by PhoP. PLoS Pathog 2008;4: e33. doi: 10.1371/journal.ppat.0040033 18282096
-
(2008)
PLoS Pathog
, vol.4
, pp. 33
-
-
Frigui, W.1
Bottai, D.2
Majlessi, L.3
Monot, M.4
Josselin, E.5
-
80
-
-
33747608638
-
NF-kappaB-dependent induction of microRNA miR-146, an inhibitor targeted to signaling proteins of innate immune responses
-
Taganov KD, Boldin MP, Chang KJ, Baltimore D, NF-kappaB-dependent induction of microRNA miR-146, an inhibitor targeted to signaling proteins of innate immune responses. Proc Natl Acad Sci U S A 2006;103: 12481–12486. 16885212
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 12481-12486
-
-
Taganov, K.D.1
Boldin, M.P.2
Chang, K.J.3
Baltimore, D.4
-
81
-
-
79953274965
-
Human macrophage responses to clinical isolates from the Mycobacterium tuberculosis complex discriminate between ancient and modern lineages
-
Portevin D, Gagneux S, Comas I, Young D, Human macrophage responses to clinical isolates from the Mycobacterium tuberculosis complex discriminate between ancient and modern lineages. PLoS Pathog 2011;7: e1001307. doi: 10.1371/journal.ppat.1001307 21408618
-
(2011)
PLoS Pathog
, vol.7
, pp. 1001307
-
-
Portevin, D.1
Gagneux, S.2
Comas, I.3
Young, D.4
-
82
-
-
0346094457
-
Prediction of mammalian microRNA targets
-
Lewis BP, Shih IH, Jones-Rhoades MW, Bartel DP, Burge CB, Prediction of mammalian microRNA targets. Cell 2003;115: 787–798. 14697198
-
(2003)
Cell
, vol.115
, pp. 787-798
-
-
Lewis, B.P.1
Shih, I.H.2
Jones-Rhoades, M.W.3
Bartel, D.P.4
Burge, C.B.5
-
83
-
-
78649255480
-
A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness
-
Burroughs AM, Ando Y, de Hoon MJ, Tomaru Y, Nishibu T, et al. A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness. Genome Res 2010;20: 1398–1410. doi: 10.1101/gr.106054.110 20719920
-
(2010)
Genome Res
, vol.20
, pp. 1398-1410
-
-
Burroughs, A.M.1
Ando, Y.2
de Hoon, M.J.3
Tomaru, Y.4
Nishibu, T.5
-
84
-
-
84867736206
-
IsomiRs—the overlooked repertoire in the dynamic microRNAome
-
Neilsen CT, Goodall GJ, Bracken CP, IsomiRs—the overlooked repertoire in the dynamic microRNAome. Trends Genet 2012;28: 544–549. doi: 10.1016/j.tig.2012.07.005 22883467
-
(2012)
Trends Genet
, vol.28
, pp. 544-549
-
-
Neilsen, C.T.1
Goodall, G.J.2
Bracken, C.P.3
-
85
-
-
69949154245
-
Zcchc11-dependent uridylation of microRNA directs cytokine expression
-
Jones MR, Quinton LJ, Blahna MT, Neilson JR, Fu S, et al. Zcchc11-dependent uridylation of microRNA directs cytokine expression. Nat Cell Biol 2009;11: 1157–1163. doi: 10.1038/ncb1931 19701194
-
(2009)
Nat Cell Biol
, vol.11
, pp. 1157-1163
-
-
Jones, M.R.1
Quinton, L.J.2
Blahna, M.T.3
Neilson, J.R.4
Fu, S.5
-
86
-
-
61449186404
-
Selective stabilization of mammalian microRNAs by 3' adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2
-
Katoh T, Sakaguchi Y, Miyauchi K, Suzuki T, Kashiwabara S, et al. Selective stabilization of mammalian microRNAs by 3' adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2. Genes Dev 2009;23: 433–438. doi: 10.1101/gad.1761509 19240131
-
(2009)
Genes Dev
, vol.23
, pp. 433-438
-
-
Katoh, T.1
Sakaguchi, Y.2
Miyauchi, K.3
Suzuki, T.4
Kashiwabara, S.5
-
87
-
-
84865123875
-
Degradation of host microRNAs by poxvirus poly(A) polymerase reveals terminal RNA methylation as a protective antiviral mechanism
-
Backes S, Shapiro JS, Sabin LR, Pham AM, Reyes I, et al. Degradation of host microRNAs by poxvirus poly(A) polymerase reveals terminal RNA methylation as a protective antiviral mechanism. Cell Host Microbe 2012;12: 200–210. doi: 10.1016/j.chom.2012.05.019 22901540
-
(2012)
Cell Host Microbe
, vol.12
, pp. 200-210
-
-
Backes, S.1
Shapiro, J.S.2
Sabin, L.R.3
Pham, A.M.4
Reyes, I.5
-
88
-
-
58249088751
-
MicroRNAs: target recognition and regulatory functions
-
Bartel DP, MicroRNAs: target recognition and regulatory functions. Cell 2009;136: 215–233. doi: 10.1016/j.cell.2009.01.002 19167326
-
(2009)
Cell
, vol.136
, pp. 215-233
-
-
Bartel, D.P.1
-
89
-
-
70349866687
-
ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data
-
Morgan M, Anders S, Lawrence M, Aboyoun P, Pages H, et al. ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data. Bioinformatics 2009;25: 2607–2608. doi: 10.1093/bioinformatics/btp450 19654119
-
(2009)
Bioinformatics
, vol.25
, pp. 2607-2608
-
-
Morgan, M.1
Anders, S.2
Lawrence, M.3
Aboyoun, P.4
Pages, H.5
-
90
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg SL, Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 2009;10: R25. doi: 10.1186/gb-2009-10-3-r25 19261174
-
(2009)
Genome Biol
, vol.10
, pp. 25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
91
-
-
75649089335
-
Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries
-
de Hoon MJ, Taft RJ, Hashimoto T, Kanamori-Katayama M, Kawaji H, et al. Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries. Genome Res 2010;20: 257–264. doi: 10.1101/gr.095273.109 20051556
-
(2010)
Genome Res
, vol.20
, pp. 257-264
-
-
de Hoon, M.J.1
Taft, R.J.2
Hashimoto, T.3
Kanamori-Katayama, M.4
Kawaji, H.5
-
92
-
-
77951770756
-
BEDTools: a flexible suite of utilities for comparing genomic features
-
Quinlan AR, Hall IM, BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 2010;26: 841–842. doi: 10.1093/bioinformatics/btq033 20110278
-
(2010)
Bioinformatics
, vol.26
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
93
-
-
84859172281
-
AD Model Builder: using automatic differentiation for statistical inference of highly parameterized complex nonlinear models
-
Fournier D, Skaug H, Ancheta J, Ianelli J, Magnusson A, et al. AD Model Builder: using automatic differentiation for statistical inference of highly parameterized complex nonlinear models. Optimization Methods and Software 2012;27: 233–249.
-
(2012)
Optimization Methods and Software
, vol.27
, pp. 233-249
-
-
Fournier, D.1
Skaug, H.2
Ancheta, J.3
Ianelli, J.4
Magnusson, A.5
-
94
-
-
84975795680
-
An integrated map of genetic variation from 1,092 human genomes
-
Abecasis GR, Auton A, Brooks LD, DePristo MA, Durbin RM, et al. An integrated map of genetic variation from 1,092 human genomes. Nature 2012;491: 56–65. doi: 10.1038/nature11632 23128226
-
(2012)
Nature
, vol.491
, pp. 56-65
-
-
Abecasis, G.R.1
Auton, A.2
Brooks, L.D.3
DePristo, M.A.4
Durbin, R.M.5
-
95
-
-
0026681074
-
Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data
-
Excoffier L, Smouse PE, Quattro JM, Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 1992;131: 479–491. 1644282
-
(1992)
Genetics
, vol.131
, pp. 479-491
-
-
Excoffier, L.1
Smouse, P.E.2
Quattro, J.M.3
-
96
-
-
0021566877
-
Estimating F-statistics for the analysis of population structure
-
Weir CL, Cockerham CC, Estimating F-statistics for the analysis of population structure. Evolution 1984;38: 1358–1370.
-
(1984)
Evolution
, vol.38
, pp. 1358-1370
-
-
Weir, C.L.1
Cockerham, C.C.2
-
97
-
-
33751329250
-
Global variation in copy number in the human genome
-
Redon R, Ishikawa S, Fitch KR, Feuk L, Perry GH, et al. Global variation in copy number in the human genome. Nature 2006;444: 444–454. 17122850
-
(2006)
Nature
, vol.444
, pp. 444-454
-
-
Redon, R.1
Ishikawa, S.2
Fitch, K.R.3
Feuk, L.4
Perry, G.H.5
-
98
-
-
34250805982
-
MicroRNA targeting specificity in mammals: determinants beyond seed pairing
-
Grimson A, Farh KK, Johnston WK, Garrett-Engele P, Lim LP, et al. MicroRNA targeting specificity in mammals: determinants beyond seed pairing. Mol Cell 2007;27: 91–105. 17612493
-
(2007)
Mol Cell
, vol.27
, pp. 91-105
-
-
Grimson, A.1
Farh, K.K.2
Johnston, W.K.3
Garrett-Engele, P.4
Lim, L.P.5
-
99
-
-
60549111634
-
WGCNA: an R package for weighted correlation network analysis
-
Langfelder P, Horvath S, WGCNA: an R package for weighted correlation network analysis. BMC Bioinformatics 2008;9: 559. doi: 10.1186/1471-2105-9-559 19114008
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 559
-
-
Langfelder, P.1
Horvath, S.2
-
100
-
-
84859326067
-
Fast R Functions for Robust Correlations and Hierarchical Clustering
-
Langfelder P, Horvath S, Fast R Functions for Robust Correlations and Hierarchical Clustering. J Stat Softw 2012;46. 23050260
-
(2012)
J Stat Softw
, vol.46
-
-
Langfelder, P.1
Horvath, S.2
-
101
-
-
0035710746
-
Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method
-
Livak KJ, Schmittgen TD, Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 2001;25: 402–408. 11846609
-
(2001)
Methods
, vol.25
, pp. 402-408
-
-
Livak, K.J.1
Schmittgen, T.D.2
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