메뉴 건너뛰기




Volumn 15, Issue 7, 2015, Pages 1259-1267

Identification of prolyl hydroxylation modifications in mammalian cell proteins

Author keywords

Cell biology; MS; Prolyl hydroxylase domain protein; Prolyl hydroxylation; PTM

Indexed keywords

C 1 TETRAHYDROFOLATE SYNTHASE; CELL EXTRACT; CELL PROTEIN; FK 506 BINDING PROTEIN; FK 506 BINDING PROTEIN 10; HEXOKINASE; HEXOKINASE 2; HYDROXYPROLINE; HYPOXIA INDUCIBLE FACTOR 1ALPHA; MYOSIN HEAVY CHAIN; MYOSIN HEAVY CHAIN 10; PROLINE DERIVATIVE; PYRUVATE KINASE; SYNTHETASE; SYNTHETIC PEPTIDE; UNCLASSIFIED DRUG; VON HIPPEL LINDAU PROTEIN; PROLINE; PROTEOME;

EID: 84926107281     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.201400398     Document Type: Article
Times cited : (17)

References (28)
  • 2
    • 33845321931 scopus 로고    scopus 로고
    • Prolyl hydroxylase-1 negatively regulates IkappaB kinase-beta, giving insight into hypoxia-induced NFkappaB activity
    • Cummins, E. P., Berra, E., Comerford, K. M., Ginouves, A. et al., Prolyl hydroxylase-1 negatively regulates IkappaB kinase-beta, giving insight into hypoxia-induced NFkappaB activity. Proc. Natl. Acad. Sci. USA 2006, 103, 18154-18159.
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 18154-18159
    • Cummins, E.P.1    Berra, E.2    Comerford, K.M.3    Ginouves, A.4
  • 3
    • 79957567239 scopus 로고    scopus 로고
    • Pyruvate kinase M2 is a PHD3-stimulated coactivator for hypoxia-inducible factor 1
    • Luo, W., Hu, H., Chang, R., Zhong, J. et al., Pyruvate kinase M2 is a PHD3-stimulated coactivator for hypoxia-inducible factor 1. Cell 2011, 145, 732-744.
    • (2011) Cell , vol.145 , pp. 732-744
    • Luo, W.1    Hu, H.2    Chang, R.3    Zhong, J.4
  • 4
    • 84883029966 scopus 로고    scopus 로고
    • PHD1 Links Cell-Cycle Progression to Oxygen Sensing through Hydroxylation of the Centrosomal Protein Cep192
    • Moser, S. C., Bensaddek, D., Ortmann, B., Maure, J.-F. et al., PHD1 Links Cell-Cycle Progression to Oxygen Sensing through Hydroxylation of the Centrosomal Protein Cep192. Dev. Cell 2013, 26, 381-392.
    • (2013) Dev. Cell , vol.26 , pp. 381-392
    • Moser, S.C.1    Bensaddek, D.2    Ortmann, B.3    Maure, J.-F.4
  • 5
    • 84887501809 scopus 로고    scopus 로고
    • Regulation of IL-1β-induced NF-κB by hydroxylases links key hypoxic and inflammatory signaling pathways
    • Scholz, C. C., Cavadas, M. A. S., Tambuwala, M. M., Hams, E. et al., Regulation of IL-1β-induced NF-κB by hydroxylases links key hypoxic and inflammatory signaling pathways. Proc. Natl. Acad. Sci. USA 2013, 110, 18490-18495.
    • (2013) Proc. Natl. Acad. Sci. USA , vol.110 , pp. 18490-18495
    • Scholz, C.C.1    Cavadas, M.A.S.2    Tambuwala, M.M.3    Hams, E.4
  • 6
    • 84864766822 scopus 로고    scopus 로고
    • PHD3-dependent hydroxylation of HCLK2 promotes the DNA damage response
    • Xie, L., Pi, X., Mishra, A., Fong, G. et al., PHD3-dependent hydroxylation of HCLK2 promotes the DNA damage response. J. Clin. Invest. 2012, 122, 2827-2836.
    • (2012) J. Clin. Invest. , vol.122 , pp. 2827-2836
    • Xie, L.1    Pi, X.2    Mishra, A.3    Fong, G.4
  • 7
    • 70249122059 scopus 로고    scopus 로고
    • Oxygen-regulated beta(2)-adrenergic receptor hydroxylation by EGLN3 and ubiquitylation by pVHL
    • Xie, L., Xiao, K., Whalen, E. J., Forrester, M. T. et al., Oxygen-regulated beta(2)-adrenergic receptor hydroxylation by EGLN3 and ubiquitylation by pVHL. Sci. Signal. 2009, 2, ra33.
    • (2009) Sci. Signal. , vol.2 , pp. ra33
    • Xie, L.1    Xiao, K.2    Whalen, E.J.3    Forrester, M.T.4
  • 8
    • 0347418197 scopus 로고    scopus 로고
    • Collagens, modifying enzymes and their mutations in humans, flies and worms
    • Myllyharju, J., Kivirikko, K. I., Collagens, modifying enzymes and their mutations in humans, flies and worms. Trends Genet. 2004, 20, 33-43.
    • (2004) Trends Genet. , vol.20 , pp. 33-43
    • Myllyharju, J.1    Kivirikko, K.I.2
  • 9
    • 43649093915 scopus 로고    scopus 로고
    • Oxygen sensing by metazoans: the central role of the HIF hydroxylase pathway
    • Kaelin, W. G., Jr, Ratcliffe, P. J., Oxygen sensing by metazoans: the central role of the HIF hydroxylase pathway. Mol. Cell. 2008, 30, 393-402.
    • (2008) Mol. Cell. , vol.30 , pp. 393-402
    • Kaelin Jr, W.G.1    Ratcliffe, P.J.2
  • 10
    • 84876006717 scopus 로고    scopus 로고
    • Prolyl Hydroxylase Domain Protein 2 (PHD2) Binds a Pro-Xaa-Leu-Glu Motif, Linking it to the Heat Shock Protein 90 Pathway
    • Song, D., Li, L.-S., Heaton-Johnson, K. J., Arsenault, P. R. et al., Prolyl Hydroxylase Domain Protein 2 (PHD2) Binds a Pro-Xaa-Leu-Glu Motif, Linking it to the Heat Shock Protein 90 Pathway. J. Biol. Chem. 2013, 288, 9662-9674.
    • (2013) J. Biol. Chem. , vol.288 , pp. 9662-9674
    • Song, D.1    Li, L.-S.2    Heaton-Johnson, K.J.3    Arsenault, P.R.4
  • 11
    • 67349266694 scopus 로고    scopus 로고
    • Universal sample preparation method for proteome analysis
    • Wiśniewski, J. R., Zougman, A., Nagaraj, N., Mann, M., Universal sample preparation method for proteome analysis. Nat. Methods 2009, 6, 359-362.
    • (2009) Nat. Methods , vol.6 , pp. 359-362
    • Wiśniewski, J.R.1    Zougman, A.2    Nagaraj, N.3    Mann, M.4
  • 12
    • 18844460394 scopus 로고    scopus 로고
    • Sample preparation and digestion for proteomic analyses using spin filters
    • Manza, L. L., Stamer, S. L., Ham, A.-J. L., Codreanu, S. G., Liebler, D. C., Sample preparation and digestion for proteomic analyses using spin filters. Proteomics 2005, 5, 1742-1745.
    • (2005) Proteomics , vol.5 , pp. 1742-1745
    • Manza, L.L.1    Stamer, S.L.2    Ham, A.-J.L.3    Codreanu, S.G.4    Liebler, D.C.5
  • 13
    • 34548183872 scopus 로고    scopus 로고
    • Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips
    • Rappsilber, J., Mann, M., Ishihama, Y., Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips. Nat. Protocols 2007, 2, 1896-1906.
    • (2007) Nat. Protocols , vol.2 , pp. 1896-1906
    • Rappsilber, J.1    Mann, M.2    Ishihama, Y.3
  • 14
    • 80052435590 scopus 로고    scopus 로고
    • Faster SEQUEST Searching for Peptide Identification from Tandem Mass Spectra
    • Diament, B. J., Noble, W. S., Faster SEQUEST Searching for Peptide Identification from Tandem Mass Spectra. J. Proteome Res. 2011, 10, 3871-3879.
    • (2011) J. Proteome Res. , vol.10 , pp. 3871-3879
    • Diament, B.J.1    Noble, W.S.2
  • 15
    • 0000857494 scopus 로고
    • An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
    • Eng, J. K., McCormack, A. L., Yates, J. R., An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J. Am. Soc. Mass Spectrom. 1994, 5, 976-989.
    • (1994) J. Am. Soc. Mass Spectrom. , vol.5 , pp. 976-989
    • Eng, J.K.1    McCormack, A.L.2    Yates, J.R.3
  • 16
    • 2942568222 scopus 로고    scopus 로고
    • Unimod: Protein modifications for mass spectrometry
    • Creasy, D. M., Cottrell, J. S., Unimod: Protein modifications for mass spectrometry. Proteomics 2004, 4, 1534-1536.
    • (2004) Proteomics , vol.4 , pp. 1534-1536
    • Creasy, D.M.1    Cottrell, J.S.2
  • 17
    • 67650345724 scopus 로고    scopus 로고
    • Improvements to the Percolator Algorithm for Peptide Identification from Shotgun Proteomics Data Sets
    • Spivak, M., Weston, J., Bottou, L., Käll, L., Noble, W. S., Improvements to the Percolator Algorithm for Peptide Identification from Shotgun Proteomics Data Sets. J. Proteome Res. 2009, 8, 3737-3745.
    • (2009) J. Proteome Res. , vol.8 , pp. 3737-3745
    • Spivak, M.1    Weston, J.2    Bottou, L.3    Käll, L.4    Noble, W.S.5
  • 18
    • 57449099865 scopus 로고    scopus 로고
    • MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
    • Cox, J., Mann, M., MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat. Biotechnol. 2008, 26, 1367-1372.
    • (2008) Nat. Biotechnol. , vol.26 , pp. 1367-1372
    • Cox, J.1    Mann, M.2
  • 19
    • 0000656605 scopus 로고    scopus 로고
    • Collision-induced dissociation of singly charged peptide ions in a matrix-assisted laser desorption ionization ion trap mass spectrometer
    • Qin, J., Chait, B. T., Collision-induced dissociation of singly charged peptide ions in a matrix-assisted laser desorption ionization ion trap mass spectrometer. Int. J. Mass Spectrom 1999, 190-191, 313-320.
    • (1999) Int. J. Mass Spectrom , vol.190-191 , pp. 313-320
    • Qin, J.1    Chait, B.T.2
  • 20
    • 33847630405 scopus 로고    scopus 로고
    • Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
    • Elias, J. E., Gygi, S. P., Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry. Nat. Methods 2007, 4, 207-214.
    • (2007) Nat. Methods , vol.4 , pp. 207-214
    • Elias, J.E.1    Gygi, S.P.2
  • 21
    • 77949768663 scopus 로고    scopus 로고
    • Maximizing the sensitivity and reliability of peptide identification in large-scale proteomic experiments by harnessing multiple search engines
    • Yu, W., Taylor, J. A., Davis, M. T., Bonilla, L. E. et al., Maximizing the sensitivity and reliability of peptide identification in large-scale proteomic experiments by harnessing multiple search engines. Proteomics 2010, 10, 1172-1189.
    • (2010) Proteomics , vol.10 , pp. 1172-1189
    • Yu, W.1    Taylor, J.A.2    Davis, M.T.3    Bonilla, L.E.4
  • 22
    • 77950381244 scopus 로고    scopus 로고
    • Mutations in the gene encoding the RER protein FKBP65 cause autosomal-recessive osteogenesis imperfecta
    • Alanay, Y., Avaygan, H., Camacho, N., Utine, G. E. et al., Mutations in the gene encoding the RER protein FKBP65 cause autosomal-recessive osteogenesis imperfecta. Am. J. Hum. Genet. 2010, 86, 551-559.
    • (2010) Am. J. Hum. Genet. , vol.86 , pp. 551-559
    • Alanay, Y.1    Avaygan, H.2    Camacho, N.3    Utine, G.E.4
  • 23
    • 84885583038 scopus 로고    scopus 로고
    • Glycolysis back in the limelight: systemic targeting of HK2 blocks tumor growth
    • Ros, S., Schulze, A., Glycolysis back in the limelight: systemic targeting of HK2 blocks tumor growth. Cancer Discov. 2013, 3, 1105-1107.
    • (2013) Cancer Discov. , vol.3 , pp. 1105-1107
    • Ros, S.1    Schulze, A.2
  • 24
    • 84920201918 scopus 로고    scopus 로고
    • PKM2 contributes to cancer metabolism
    • Wong, N., Ojo, D., Yan, J., Tang, D., PKM2 contributes to cancer metabolism. Cancer Lett. 2015, 356, 184-191.
    • (2015) Cancer Lett. , vol.356 , pp. 184-191
    • Wong, N.1    Ojo, D.2    Yan, J.3    Tang, D.4
  • 25
    • 84863227553 scopus 로고    scopus 로고
    • Update and new concepts in vitamin responsive disorders of folate transport and metabolism
    • Watkins, D., Rosenblatt, D. S., Update and new concepts in vitamin responsive disorders of folate transport and metabolism. J. Inherit. Metab. Dis. 2012, 35, 665-670.
    • (2012) J. Inherit. Metab. Dis. , vol.35 , pp. 665-670
    • Watkins, D.1    Rosenblatt, D.S.2
  • 26
    • 84903581668 scopus 로고    scopus 로고
    • A point mutation in Myh10 causes major defects in heart development and body wall closure
    • Ma, X., Adelstein, R. S., A point mutation in Myh10 causes major defects in heart development and body wall closure. Circ. Cardiovasc. Genet. 2014, 7, 257-265.
    • (2014) Circ. Cardiovasc. Genet. , vol.7 , pp. 257-265
    • Ma, X.1    Adelstein, R.S.2
  • 27
    • 0037131159 scopus 로고    scopus 로고
    • Sequence Determinants in Hypoxia-inducible Factor-1? for Hydroxylation by the Prolyl Hydroxylases PHD1, PHD2, and PHD3
    • Huang, J., Zhao, Q., Mooney, S. M., Lee, F. S., Sequence Determinants in Hypoxia-inducible Factor-1? for Hydroxylation by the Prolyl Hydroxylases PHD1, PHD2, and PHD3. J Biol. Chem. 2002, 277, 39792-39800.
    • (2002) J Biol. Chem. , vol.277 , pp. 39792-39800
    • Huang, J.1    Zhao, Q.2    Mooney, S.M.3    Lee, F.S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.