Cytoskeletal control of nuclear morphology and chromatin o1rganization

Journal of Molecular Biology

Volumn 427, Issue 3, 2015, Pages 695-706

  Ramdas, Nisha M ^a   Shivashankar, G V ^b  

^a TATA INSTITUTE OF FUNDAMENTAL RESEARCH   (India)

^b NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

Author keywords

[No Author keywords available]

Indexed keywords

ACTIN; DNA; DOUBLE STRANDED RNA; HISTONE; LAMIN; LATRUNCULIN A; MYOSIN HEAVY CHAIN; NUCLEAR PROTEIN;

ACTIN FILAMENT; ANIMAL CELL; ARTICLE; CELL CYCLE; CELL NUCLEUS; CELL NUCLEUS MEMBRANE; CHROMATIN; CONTROLLED STUDY; CYTOSKELETON; DROSOPHILA; FLUORESCENCE RECOVERY AFTER PHOTOBLEACHING; GENE EXPRESSION; MECHANOTRANSDUCTION; MICROTUBULE; MOLECULAR DYNAMICS; MORPHOLOGY; NONHUMAN; PRIORITY JOURNAL; RNA INTERFERENCE; TRANSCRIPTION REGULATION; ANIMAL; CHROMATIN ASSEMBLY AND DISASSEMBLY; DROSOPHILA MELANOGASTER; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; PHYSIOLOGY; ULTRASTRUCTURE;

ACTINS; ANIMALS; CELL NUCLEUS; CHROMATIN ASSEMBLY AND DISASSEMBLY; CYTOSKELETON; DROSOPHILA MELANOGASTER; GENE EXPRESSION REGULATION; HISTONES; MECHANOTRANSDUCTION, CELLULAR; NUCLEAR PROTEINS;

EID: 84925603636     PISSN: 00222836     EISSN: 10898638     Source Type: Journal    
DOI: 10.1016/j.jmb.2014.09.008     Document Type: Article

References (70)

1. E.I. Campos, and D. Reinberg Histones: annotating chromatin Annu Rev Genet 43 2009 559 599
2. C.L. Woodcock Chromatin architecture Curr Opin Struct Biol 16 2006 213 220
3. G.V. Shivashankar Mechanosignaling to cell nucleus and gene regulation Annu Rev Biophys 2011 10.1146/annurev-biophys-042910-155319
4. G. Cavalli, and T. Misteli Functional implications of genome topology Nat Struct Mol Biol 20 2013 290 299
5. C. Lanctot, T. Cheutin, M. Cremer, G. Cavalli, and T. Cremer Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions Nat Rev Genet 8 2007 104 115
6. A. Akhtar, and S.M. Gasser The nuclear envelope and transcriptional control Nat Rev Genet 8 2007 507 517
7. B.D. Towbin, P. Meister, and S.M. Gasser The nuclear envelope - a scaffold for silencing? Curr Opin Genet Dev 19 2009 180 186
8. K. Mekhail, and D. Moazed The nuclear envelope in genome organization, expression and stability Nat Rev Mol Cell Biol 11 2010 317 328
9. Y. Gruenbaum, A. Margalit, R.D. Goldman, D.K. Shumaker, and K.L. Wilson The nuclear lamina comes of age Nat Rev Mol Cell Biol 6 2005 21 31
10. B. Burke, and C.L. Stewart The nuclear lamins: flexibility in function Nat Rev Mol Cell Biol 14 2013 13 24
11. J.D. Pajerowski, K.N. Dahl, F.L. Zhong, P.J. Sammak, and D.E. Discher Physical plasticity of the nucleus in stem cell differentiation Proc Natl Acad Sci USA 104 2007 15619 15624
12. K.N. Dahl, S.M. Kahn, K.L. Wilson, and D.E. Discher The nuclear envelope lamina network has elasticity and a compressibility limit suggestive of a molecular shock absorber J Cell Sci 117 2004 4779 4786
13. B. Burke, and C.L. Stewart Life at the edge: the nuclear envelope and human disease Nat Rev Mol Cell Biol 3 2002 575 585
14. N. Zuela, D.Z. Bar, and Y. Gruenbaum Lamins in development, tissue maintenance and stress EMBO Rep 13 2012 1070 1078
15. B.C. Capell, and F.S. Collins Human laminopathies: nuclei gone genetically awry Nat Rev Genet 7 2006 940 952
16. Y.B. Tzur, K.L. Wilson, and Y. Gruenbaum SUN-domain proteins: "Velcro" that links the nucleoskeleton to the cytoskeleton Nat Rev Mol Cell Biol 7 2006 782 788
17. D.N. Simon, and K.L. Wilson The nucleoskeleton as a genome-associated dynamic "network of networks" Nat Rev Mol Cell Biol 12 2011 695 708
18. D. a Starr, and H.N. Fridolfsson Interactions between nuclei and the cytoskeleton are mediated by SUN-KASH nuclear-envelope bridges Annu Rev Cell Dev Biol 26 2010 421 444
19. Q. Li, A. Kumar, E. Makhija, and G.V. Shivashankar The regulation of dynamic mechanical coupling between actin cytoskeleton and nucleus by matrix geometry Biomaterials 35 2014 961 969
20. K.V. Iyer, S. Pulford, A. Mogilner, and G.V. Shivashankar Mechanical activation of cells induces chromatin remodeling preceding MKL nuclear transport Biophys J 103 2012 1416 1428
21. A.J. Maniotis, C.S. Chen, and D.E. Ingber Demonstration of mechanical connections between integrins, cytoskeletal filaments, and nucleoplasm that stabilize nuclear structure Proc Natl Acad Sci USA 94 1997 849 854
22. G.G. Gundersen, and H.J. Worman Nuclear positioning Cell 152 2013 1376 1389
23. M.L. Lombardi, D.E. Jaalouk, C.M. Shanahan, B. Burke, K.J. Roux, and J. Lammerding The interaction between nesprins and sun proteins at the nuclear envelope is critical for force transmission between the nucleus and cytoskeleton J Biol Chem 286 2011 26743 26753
24. G.W.G. Luxton, E.R. Gomes, E.S. Folker, E. Vintinner, and G.G. Gundersen Linear arrays of nuclear envelope proteins harness retrograde actin flow for nuclear movement Science 329 2010 956 959
25. M. Versaevel, T. Grevesse, and S. Gabriele Spatial coordination between cell and nuclear shape within micropatterned endothelial cells Nat Commun 3 2012 671
26. A. Mazumder, and G.V. Shivashankar Emergence of a prestressed eukaryotic nucleus during cellular differentiation and development J R Soc Interface 7 2010 S321 S330
27. S.B. Khatau, C.M. Hale, P.J. Stewart-Hutchinson, M.S. Patel, C.L. Stewart, and P.C. Searson A perinuclear actin cap regulates nuclear shape Proc Natl Acad Sci USA 106 2009 19017 19022
28. Y. Tseng, J.S.H. Lee, T.P. Kole, I. Jiang, and D. Wirtz Micro-organization and visco-elasticity of the interphase nucleus revealed by particle nanotracking J Cell Sci 117 2004 2159 2167
29. N. Wang, J.D. Tytell, and D.E. Ingber Mechanotransduction at a distance: mechanically coupling the extracellular matrix with the nucleus Nat Rev Mol Cell Biol 10 2009 75 82
30. S. Kumar, I.Z. Maxwell, A. Heisterkamp, T.R. Polte, T.P. Lele, and M. Salanga Viscoelastic retraction of single living stress fibers and its impact on cell shape, cytoskeletal organization, and extracellular matrix mechanics Biophys J 90 2006 3762 3773
31. F. Houben, F.C.S. Ramaekers, L.H.E.H. Snoeckx, and J.L.V. Broers Role of nuclear lamina-cytoskeleton interactions in the maintenance of cellular strength Biochim Biophys Acta 1773 2007 675 686
32. C.P. Brangwynne, F.C. MacKintosh, S. Kumar, N.A. Geisse, J. Talbot, and L. Mahadevan Microtubules can bear enhanced compressive loads in living cells because of lateral reinforcement J Cell Biol 173 2006 733 741
33. F. Gittes, B. Mickey, J. Nettleton, and J. Howard Flexural rigidity of microtubules and actin filaments measured from thermal fluctuations in shape J Cell Biol 120 1993 923 934
34. M.S. Kolodney, and E.L. Elson Contraction due to microtubule disruption is associated with increased phosphorylation of myosin regulatory light chain Proc Natl Acad Sci USA 92 1995 10252 10256
35. T. Enomoto Microtubule disruption induces the formation of actin stress fibers and focal adhesions in cultured cells: possible involvement of the rho signal cascade Cell Struct Funct 21 1996 317 326
36. O.C. Rodriguez, A.W. Schaefer, C.A. Mandato, P. Forscher, W.M. Bement, and C.M. Waterman-Storer Conserved microtubule-actin interactions in cell movement and morphogenesis Nat Cell Biol 5 2003 599 609
37. N.R. Morris Nuclear positioning: the means is at the ends Curr Opin Cell Biol 15 2003 54 59
38. M.C. King, T.G. Drivas, and G. Blobel A network of nuclear envelope membrane proteins linking centromeres to microtubules Cell 134 2008 427 438
39. A. Sato, B. Isaac, C.M. Phillips, R. Rillo, P.M. Carlton, and D.J. Wynne Cytoskeletal forces span the nuclear envelope to coordinate meiotic chromosome pairing and synapsis Cell 139 2009 907 919
40. M. Crisp, and B. Burke The nuclear envelope as an integrator of nuclear and cytoplasmic architecture FEBS Lett 582 2008 2023 2032
41. M. Coué, S.L. Brenner, I. Spector, and E.D. Korn Inhibition of actin polymerization by latrunculin A FEBS Lett 213 1987 316 318
42. P. Forscher, and S.J. Smith Actions of cytochalasins on the organization of actin filaments and microtubules in a neuronal growth cone J Cell Biol 107 1988 1505 1516
43. C.M. Waterman-Storer, and E.D. Salmon Actomyosin-based retrograde flow of microtubules in the lamella of migrating epithelial cells influences microtubule dynamic instability and turnover and is associated with microtubule breakage and treadmilling J Cell Biol 139 1997 417 434
44. C.P. Brangwynne, F.C. MacKintosh, and D.A. Weitz Force fluctuations and polymerization dynamics of intracellular microtubules Proc Natl Acad Sci USA 104 2007 16128 16133
45. U. Eilers, J. Klumperman, and H.P. Hauri Nocodazole, a microtubule-active drug, interferes with apical protein delivery in cultured intestinal epithelial cells (Caco-2) J Cell Biol 108 1989 13 22
46. H. Xiao, P. Verdier-Pinard, N. Fernandez-Fuentes, B. Burd, R. Angeletti, and A. Fiser Insights into the mechanism of microtubule stabilization by Taxol Proc Natl Acad Sci USA 103 2006 10166 10173
47. B. Mickey, and J. Howard Rigidity of microtubules is increased by stabilizing agents J Cell Biol 130 1995 909 917
48. K.L. Wilson, and J.M. Berk The nuclear envelope at a glance J Cell Sci 123 2010 1973 1978
49. M.P. Kracklauer, S.M.L. Banks, X. Xie, Y. Wu, and J.A. Fischer Drosophila klaroid encodes a SUN domain protein required for Klarsicht localization to the nuclear envelope and nuclear migration in the eye Fly (Austin) 1 2007 75 85
50. J.A. Fischer, S. Acosta, A. Kenny, C. Cater, C. Robinson, and J. Hook Drosophila klarsicht has distinct subcellular localization domains for nuclear envelope and microtubule localization in the eye Genetics 168 2004 1385 1393
51. M.P. Kracklauer, H.M. Wiora, W.J. Deery, X. Chen, B. Bolival, and D. Romanowicz The Drosophila SUN protein Spag4 cooperates with the coiled-coil protein Yuri Gagarin to maintain association of the basal body and spermatid nucleus J Cell Sci 123 2010 2763 2772
52. Q. Zhang, C. Ragnauth, M.J. Greener, C.M. Shanahan, and R.G. Roberts The nesprins are giant actin-binding proteins, orthologous to Drosophila melanogaster muscle protein MSP-300 Genomics 80 2002 473 481
53. A. Mazumder, and G.V. Shivashankar Gold-nanoparticle-assisted laser perturbation of chromatin assembly reveals unusual aspects of nuclear architecture within living cells Biophys J 93 2007 2209 2216
54. D. Bhattacharya, S. Talwar, A. Mazumder, and G.V. Shivashankar Spatio-temporal plasticity in chromatin organization in mouse cell differentiation and during Drosophila embryogenesis Biophys J 96 2009 3832 3839
55. B. Hampoelz, Y. Azou-Gros, R. Fabre, O. Markova, P.H. Puech, and T. Lecuit Microtubule-induced nuclear envelope fluctuations control chromatin dynamics in Drosophila embryos Development 138 2011 3377 3386
56. D. Bhattacharya, A. Mazumder, S.A. Miriam, and G.V. Shivashankar EGFP-tagged core and linker histones diffuse via distinct mechanisms within living cells Biophys J 91 2006 2326 2336
57. M. Ashburner, C.A. Ball, J.A. Blake, D. Botstein, H. Butler, and J.M. Cherry Gene ontology: tool for the unification of biology. The Gene Ontology Consortium Nat Genet 25 2000 25 29
58. G.D. Gupta, G. Dey, S. Mg, B. Ramalingam, K. Shameer, and J.J. Thottacherry Population distribution analyses reveal a hierarchy of molecular players underlying parallel endocytic pathways PLoS One 9 2014 e100554
59. G. Dey, G.D. Gupta, B. Ramalingam, M. Sathe, S. Mayor, and M. Thattai Exploiting cell-to-cell variability to detect cellular perturbations PLoS One 9 2014 e90540
60. C.Y. Ho, D.E. Jaalouk, M.K. Vartiainen, and J. Lammerding Lamin A/C and emerin regulate MKL1-SRF activity by modulating actin dynamics Nature 497 2013 507 511
61. S.C.P. De Castro, A. Malhas, K.-Y. Leung, P. Gustavsson, D.J. Vaux, and A.J. Copp Lamin b1 polymorphism influences morphology of the nuclear envelope, cell cycle progression, and risk of neural tube defects in mice PLoS Genet 8 2012 e1003059
62. G. Maresca, M. Natoli, M. Nardella, I. Arisi, D. Trisciuoglio, and M. Desideri LMNA knock-down affects differentiation and progression of human neuroblastoma cells PLoS One 7 2012 e45513
63. A. Malhas, C.F. Lee, R. Sanders, N.J. Saunders, and D.J. Vaux Defects in lamin B1 expression or processing affect interphase chromosome position and gene expression J Cell Biol 176 2007 593 603
64. N. Jain, V. Iyer, A. Kumar, and G.V. Shivashankar Cell geometric constraints induce modular gene expression patterns via redistribution of HDAC3 regulated by acto-myosin contractility Proc Natl Acad Sci USA 110 2013 11349 11354
65. D.E. Ingber Cellular mechanotransduction: putting all the pieces together again FASEB J 20 2006 811 827
66. D.E. Jaalouk, and J. Lammerding Mechanotransduction gone awry Nat Rev Mol Cell Biol 10 2009 63 73
67. M. Zwerger, C.Y. Ho, and J. Lammerding Nuclear mechanics in disease Annu Rev Biomed Eng 13 2011 397 428
68. J.C. Clemens, C.A. Worby, N. Simonson-Leff, M. Muda, T. Maehama, and B.A. Hemmings Use of double-stranded RNA interference in Drosophila cell lines to dissect signal transduction pathways Proc Natl Acad Sci USA 97 2000 6499 6503
69. M.V. D'Ambrosio, and R.D. Vale A whole genome RNAi screen of Drosophila S2 cell spreading performed using automated computational image analysis J Cell Biol 191 2010 471 478
70. D.W. Huang, B.T. Sherman, and R.A. Lempicki Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources Nat Protoc 4 2009 44 57