메뉴 건너뛰기




Volumn 24, Issue 7, 2015, Pages 1523-1542

Estimating the temporal and spatial extent of gene flow among sympatric lizard populations (genus Sceloporus) in the southern Mexican highlands

Author keywords

Bayesian phylogeography; coalescent simulations; gene flow; hybridization; Mexico; mito nuclear discordance; species delimitation

Indexed keywords

SCELOPORUS; SCELOPORUS HORRIDUS; SCELOPORUS SPINOSUS; SQUAMATA; VASCONCELLEA CANDICANS;

EID: 84925436786     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/mec.13122     Document Type: Article
Times cited : (19)

References (102)
  • 2
    • 0037329391 scopus 로고    scopus 로고
    • Bayes or bootstrap? A simulation study comparing the performance of bayesian markov chain monte carlo sampling and bootstrapping in assessing phylogenetic confidence
    • Alfaro ME, Zoller S, Lutzoni F, (2003) Bayes or bootstrap? A simulation study comparing the performance of bayesian markov chain monte carlo sampling and bootstrapping in assessing phylogenetic confidence. Molecular Biology and Evolution, 20, 255-266.
    • (2003) Molecular Biology and Evolution , vol.20 , pp. 255-266
    • Alfaro, M.E.1    Zoller, S.2    Lutzoni, F.3
  • 3
    • 0028154142 scopus 로고
    • Mitochondrial dna sequence divergence and phylogenetic relationships among eight chromosome races of the Sceloporus grammicus complex (phrynosomatidae) in central mexico
    • Arèvalo E, Davis SK, Sites JW, (1994) Mitochondrial dna sequence divergence and phylogenetic relationships among eight chromosome races of the Sceloporus grammicus complex (phrynosomatidae) in central mexico. Systematic Biology, 43, 387-418.
    • (1994) Systematic Biology , vol.43 , pp. 387-418
    • Arèvalo, E.1    Davis, S.K.2    Sites, J.W.3
  • 5
    • 84865475040 scopus 로고    scopus 로고
    • Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty
    • Baele G, Lemey P, Bedford T, Rambaut A, Suchard MA, Alekseyenko AV, (2012) Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty. Molecular Biology and Evolution, 29, 2157-2167.
    • (2012) Molecular Biology and Evolution , vol.29 , pp. 2157-2167
    • Baele, G.1    Lemey, P.2    Bedford, T.3    Rambaut, A.4    Suchard, M.A.5    Alekseyenko, A.V.6
  • 6
    • 84888824954 scopus 로고    scopus 로고
    • The challenge of species delimitation at the extremes: Diversification without morphological change in philippine sun skinks
    • Barley AJ, White J, Diesmos AC, Brown RM, (2013) The challenge of species delimitation at the extremes: diversification without morphological change in philippine sun skinks. Evolution, 67, 3556-3572.
    • (2013) Evolution , vol.67 , pp. 3556-3572
    • Barley, A.J.1    White, J.2    Diesmos, A.C.3    Brown, R.M.4
  • 7
    • 80053959139 scopus 로고    scopus 로고
    • Spread: Spatial phylogenetic reconstruction of evolutionary dynamics
    • Bielejec F, Rambaut A, Suchard MA, Lemey P, (2011) Spread: spatial phylogenetic reconstruction of evolutionary dynamics. Bioinformatics, 27, 2910-2912.
    • (2011) Bioinformatics , vol.27 , pp. 2910-2912
    • Bielejec, F.1    Rambaut, A.2    Suchard, M.A.3    Lemey, P.4
  • 9
    • 79952128500 scopus 로고    scopus 로고
    • Accommodating heterogenous rates of evolution in molecular divergence dating methods: An example using intercontinental dispersal of plestiodon (eumeces) lizards
    • Brandley MC, Wang Y, Guo X, et al,. (2011) Accommodating heterogenous rates of evolution in molecular divergence dating methods: an example using intercontinental dispersal of plestiodon (eumeces) lizards. Systematic Biology, 60, 3-15.
    • (2011) Systematic Biology , vol.60 , pp. 3-15
    • Brandley, M.C.1    Wang, Y.2    Guo, X.3
  • 10
    • 84855770713 scopus 로고    scopus 로고
    • Tracing the origins of widespread highland species: A case of neogene diversification across the mexican sierras in an endemic lizard
    • Bryson RW, Riddle BR, (2012) Tracing the origins of widespread highland species: a case of neogene diversification across the mexican sierras in an endemic lizard. Biological Journal of the Linnean Society, 105, 382-394.
    • (2012) Biological Journal of the Linnean Society , vol.105 , pp. 382-394
    • Bryson, R.W.1    Riddle, B.R.2
  • 11
    • 79960206294 scopus 로고    scopus 로고
    • Phylogeography of middle american gophersnakes: Mixed responses to biogeographical barriers across the mexican transition zone
    • Bryson RW, García-Vázquez UO, Riddle BR, (2011a) Phylogeography of middle american gophersnakes: mixed responses to biogeographical barriers across the mexican transition zone. Journal of Biogeography, 38, 1570-1584.
    • (2011) Journal of Biogeography , vol.38 , pp. 1570-1584
    • Bryson, R.W.1    García-Vázquez, U.O.2    Riddle, B.R.3
  • 12
    • 79952653357 scopus 로고    scopus 로고
    • Evolutionary drivers of phylogeographical diversity in the highlands of mexico: A case study of the Crotalus triseriatus species group of montane rattlesnakes
    • Bryson RW, Murphy RW, Lathrop A, Lazcano-Villareal D, (2011b) Evolutionary drivers of phylogeographical diversity in the highlands of mexico: a case study of the Crotalus triseriatus species group of montane rattlesnakes. Journal of Biogeography, 38, 697-710.
    • (2011) Journal of Biogeography , vol.38 , pp. 697-710
    • Bryson, R.W.1    Murphy, R.W.2    Lathrop, A.3    Lazcano-Villareal, D.4
  • 14
    • 83655161371 scopus 로고    scopus 로고
    • Relative roles of neogene vicariance and quaternary climate change on the historical diversification of bunchgrass lizards (Sceloporus scalaris group) in mexico
    • Bryson Jr RW, García-Vázquez UO, Riddle BR, (2012b) Relative roles of neogene vicariance and quaternary climate change on the historical diversification of bunchgrass lizards (Sceloporus scalaris group) in mexico. Molecular Phylogenetics and Evolution, 62, 447-457.
    • (2012) Molecular Phylogenetics and Evolution , vol.62 , pp. 447-457
    • Bryson, Jr.R.W.1    García-Vázquez, U.O.2    Riddle, B.R.3
  • 15
    • 12444323629 scopus 로고    scopus 로고
    • Accounting for coalescent stochasticity in testing phylogeographical hypotheses: Modelling pleistocene population structure in the idaho giant salamander dicamptodon aterrimus
    • Carstens B, Degenhardt J, Stevenson A, Sullivan J, (2005) Accounting for coalescent stochasticity in testing phylogeographical hypotheses: modelling pleistocene population structure in the idaho giant salamander dicamptodon aterrimus. Molecular Ecology, 14, 255-265.
    • (2005) Molecular Ecology , vol.14 , pp. 255-265
    • Carstens, B.1    Degenhardt, J.2    Stevenson, A.3    Sullivan, J.4
  • 16
    • 84858022569 scopus 로고    scopus 로고
    • Phylogeography of sardinian cave salamanders (genus Hydromantes) is mainly determined by geomorphology
    • Chiari Y, van der Meijden A, Mucedda M, Lourenço JM, Hochkirch A, Veith M, (2012) Phylogeography of sardinian cave salamanders (genus Hydromantes) is mainly determined by geomorphology. PLoS One, 7, e32332.
    • (2012) PLoS One , vol.7 , pp. e32332
    • Chiari, Y.1    Van Der Meijden, A.2    Mucedda, M.3    Lourenço, J.M.4    Hochkirch, A.5    Veith, M.6
  • 17
    • 80053949431 scopus 로고    scopus 로고
    • Joint inference of population assignment and demographic history
    • Choi SC, Hey J, (2011) Joint inference of population assignment and demographic history. Genetics, 189, 561-577.
    • (2011) Genetics , vol.189 , pp. 561-577
    • Choi, S.C.1    Hey, J.2
  • 18
    • 15444353109 scopus 로고
    • Karyotypes and evolution of the spinosus group of lizards in the genus Sceloporus
    • Cole CJ, (1970) Karyotypes and evolution of the spinosus group of lizards in the genus Sceloporus. American Museum Novitates, 2431, 1-47.
    • (1970) American Museum Novitates , vol.2431 , pp. 1-47
    • Cole, C.J.1
  • 19
    • 34447536856 scopus 로고    scopus 로고
    • Does the trans-mexican volcanic belt represent a natural biogeographical unit? An analysis of the distributional patterns of coleoptera
    • Corona AM, Toledo VH, Morrone JJ, (2007) Does the trans-mexican volcanic belt represent a natural biogeographical unit? An analysis of the distributional patterns of coleoptera. Journal of Biogeography, 34, 1008-1015.
    • (2007) Journal of Biogeography , vol.34 , pp. 1008-1015
    • Corona, A.M.1    Toledo, V.H.2    Morrone, J.J.3
  • 20
    • 51549089796 scopus 로고    scopus 로고
    • A genealogical approach to quantifying lineage divergence
    • Cummings MP, Neel MC, Shaw KL, (2008) A genealogical approach to quantifying lineage divergence. Evolution, 62, 2411-2422.
    • (2008) Evolution , vol.62 , pp. 2411-2422
    • Cummings, M.P.1    Neel, M.C.2    Shaw, K.L.3
  • 21
    • 84864453108 scopus 로고    scopus 로고
    • Jmodeltest 2: More models, new heuristics and parallel computing
    • Darriba D, Taboada GL, Doallo R, Posada D, (2012) jmodeltest 2: more models, new heuristics and parallel computing. Nature Methods, 9, 772-772.
    • (2012) Nature Methods , vol.9 , pp. 772-772
    • Darriba, D.1    Taboada, G.L.2    Doallo, R.3    Posada, D.4
  • 23
    • 33750994950 scopus 로고    scopus 로고
    • Phylogeography of the western lyresnake (Trimorphodon biscutatus): Testing aridland biogeographical hypotheses across the nearctic-neotropical transition
    • Devitt TJ, (2006) Phylogeography of the western lyresnake (Trimorphodon biscutatus): testing aridland biogeographical hypotheses across the nearctic-neotropical transition. Molecular Ecology, 15, 4387-4407.
    • (2006) Molecular Ecology , vol.15 , pp. 4387-4407
    • Devitt, T.J.1
  • 24
    • 38649110663 scopus 로고    scopus 로고
    • Beast: Bayesian evolutionary analysis by sampling trees
    • Drummond AJ, Rambaut A, (2007) Beast: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology, 7, 214.
    • (2007) BMC Evolutionary Biology , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 25
    • 84882759440 scopus 로고    scopus 로고
    • Structure harvester: A website and program for visualizing structure output and implementing the evanno method
    • Earl DA, vonHoldt BM, (2012) Structure harvester: a website and program for visualizing structure output and implementing the evanno method. Conservation Genetics Resources, 4, 359-361.
    • (2012) Conservation Genetics Resources , vol.4 , pp. 359-361
    • Earl, D.A.1    Vonholdt, B.M.2
  • 26
    • 21244479740 scopus 로고    scopus 로고
    • Detecting the number of clusters of individuals using the software structure: A simulation study
    • Evanno G, Regnaut S, Goudet J, (2005) Detecting the number of clusters of individuals using the software structure: a simulation study. Molecular Ecology, 14, 2611-2620.
    • (2005) Molecular Ecology , vol.14 , pp. 2611-2620
    • Evanno, G.1    Regnaut, S.2    Goudet, J.3
  • 27
    • 77953032930 scopus 로고    scopus 로고
    • Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under linux and windows
    • Excoffier L, Lischer HE, (2010) Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under linux and windows. Molecular Ecology Resources, 10, 564-567.
    • (2010) Molecular Ecology Resources , vol.10 , pp. 564-567
    • Excoffier, L.1    Lischer, H.E.2
  • 28
    • 0041817568 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies
    • Falush D, Stephens M, Pritchard JK, (2003) Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics, 164, 1567-1587.
    • (2003) Genetics , vol.164 , pp. 1567-1587
    • Falush, D.1    Stephens, M.2    Pritchard, J.K.3
  • 32
    • 84894557940 scopus 로고    scopus 로고
    • Species delimitation using bayes factors: Simulations and application to the Sceloporus scalaris species group (Squamata: Phrynosomatidae)
    • Grummer JA, Bryson Jr RW, Reeder TW, (2014) Species delimitation using bayes factors: simulations and application to the Sceloporus scalaris species group (Squamata: Phrynosomatidae). Systematic Biology, 63, 119-133.
    • (2014) Systematic Biology , vol.63 , pp. 119-133
    • Grummer, J.A.1    Bryson, Jr.R.W.2    Reeder, T.W.3
  • 33
    • 52949124869 scopus 로고    scopus 로고
    • Inference of structure in subdivided populations at low levels of genetic differentiation - The correlated allele frequencies model revisited
    • Guillot G, (2008) Inference of structure in subdivided populations at low levels of genetic differentiation-the correlated allele frequencies model revisited. Bioinformatics, 24, 2222-2228.
    • (2008) Bioinformatics , vol.24 , pp. 2222-2228
    • Guillot, G.1
  • 34
    • 23344443817 scopus 로고    scopus 로고
    • A spatial statistical model for landscape genetics
    • Guillot G, Estoup A, Mortier F, Cosson JF, (2005a) A spatial statistical model for landscape genetics. Genetics, 170, 1261-1280.
    • (2005) Genetics , vol.170 , pp. 1261-1280
    • Guillot, G.1    Estoup, A.2    Mortier, F.3    Cosson, J.F.4
  • 35
    • 28344432025 scopus 로고    scopus 로고
    • Geneland: A computer package for landscape genetics
    • Guillot G, Mortier F, Estoup A, (2005b) Geneland: a computer package for landscape genetics. Molecular Ecology Notes, 5, 712-715.
    • (2005) Molecular Ecology Notes , vol.5 , pp. 712-715
    • Guillot, G.1    Mortier, F.2    Estoup, A.3
  • 36
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S, Gascuel O, (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology, 52, 696-704.
    • (2003) Systematic Biology , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 38
    • 77249086587 scopus 로고    scopus 로고
    • Bayesian inference of species trees from multilocus data
    • Heled J, Drummond AJ, (2010) Bayesian inference of species trees from multilocus data. Molecular Biology and Evolution, 27, 570-580.
    • (2010) Molecular Biology and Evolution , vol.27 , pp. 570-580
    • Heled, J.1    Drummond, A.J.2
  • 39
    • 0035047175 scopus 로고    scopus 로고
    • Speciation, hybrid zones and phylogeography - Or seeing genes in space and time
    • Hewitt GM, (2001) Speciation, hybrid zones and phylogeography-or seeing genes in space and time. Molecular Ecology, 10, 537-549.
    • (2001) Molecular Ecology , vol.10 , pp. 537-549
    • Hewitt, G.M.1
  • 41
    • 73149092620 scopus 로고    scopus 로고
    • On the arbitrary identification of real species
    • (eds Butlin R.K. Bridle J. Schluter D.), Cambridge University Press, Cambridge, England.
    • Hey J, (2009) On the arbitrary identification of real species. In: Speciation and Patterns of Diversity (eds, Butlin RK, Bridle J, Schluter D,), pp. 15-28. Cambridge University Press, Cambridge, England.
    • (2009) Speciation and Patterns of Diversity , pp. 15-28
    • Hey, J.1
  • 42
    • 77952294620 scopus 로고    scopus 로고
    • Isolation with migration models for more than two populations
    • Hey J, (2010) Isolation with migration models for more than two populations. Molecular Biology and Evolution, 27, 905-920.
    • (2010) Molecular Biology and Evolution , vol.27 , pp. 905-920
    • Hey, J.1
  • 44
    • 12044253190 scopus 로고
    • An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis
    • Hillis DM, Bull JJ, (1993) An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Systematic Biology, 42, 182-192.
    • (1993) Systematic Biology , vol.42 , pp. 182-192
    • Hillis, D.M.1    Bull, J.J.2
  • 45
    • 0036184745 scopus 로고    scopus 로고
    • Generating samples under a wright-fisher neutral model of genetic variation
    • Hudson RR, (2002) Generating samples under a wright-fisher neutral model of genetic variation. Bioinformatics, 18, 337-338.
    • (2002) Bioinformatics , vol.18 , pp. 337-338
    • Hudson, R.R.1
  • 46
    • 34249066206 scopus 로고    scopus 로고
    • Inference of population structure under a dirichlet process model
    • Huelsenbeck JP, Andolfatto P, (2007) Inference of population structure under a dirichlet process model. Genetics, 175, 1787-1802.
    • (2007) Genetics , vol.175 , pp. 1787-1802
    • Huelsenbeck, J.P.1    Andolfatto, P.2
  • 48
    • 34547861256 scopus 로고    scopus 로고
    • Clumpp: A cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure
    • Jakobsson M, Rosenberg NA, (2007) Clumpp: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics, 23, 1801-1806.
    • (2007) Bioinformatics , vol.23 , pp. 1801-1806
    • Jakobsson, M.1    Rosenberg, N.A.2
  • 49
    • 79953123367 scopus 로고    scopus 로고
    • The computer program structure does not reliably identify the main genetic clusters within species: Simulations and implications for human population structure
    • Kalinowski ST, (2011) The computer program structure does not reliably identify the main genetic clusters within species: simulations and implications for human population structure. Heredity, 106, 625-632.
    • (2011) Heredity , vol.106 , pp. 625-632
    • Kalinowski, S.T.1
  • 51
    • 0035043359 scopus 로고    scopus 로고
    • Did the pleistocene glaciations promote divergence? Tests of explicit refugial models in montane grasshopprers
    • Knowles LL, (2001) Did the pleistocene glaciations promote divergence? Tests of explicit refugial models in montane grasshopprers. Molecular Ecology, 10, 691-701.
    • (2001) Molecular Ecology , vol.10 , pp. 691-701
    • Knowles, L.L.1
  • 53
    • 0024382879 scopus 로고
    • Dynamics of mitochondrial dna evolution in animals: Amplification and sequencing with conserved primers
    • Kocher TD, Thomas WK, Meyer A, et al,. (1989) Dynamics of mitochondrial dna evolution in animals: amplification and sequencing with conserved primers. Proceedings of the National Academy of Sciences, USA, 86, 6196-6200.
    • (1989) Proceedings of the National Academy of Sciences, USA , vol.86 , pp. 6196-6200
    • Kocher, T.D.1    Thomas, W.K.2    Meyer, A.3
  • 54
    • 58349112353 scopus 로고    scopus 로고
    • Coalescent genealogy samplers: Windows into population history
    • Kuhner MK, (2009) Coalescent genealogy samplers: windows into population history. Trends in Ecology & Evolution, 24, 86-93.
    • (2009) Trends in Ecology & Evolution , vol.24 , pp. 86-93
    • Kuhner, M.K.1
  • 56
    • 70649110122 scopus 로고    scopus 로고
    • Species tree discordance traces to phylogeographic clade boundaries in north american fence lizards (Sceloporus)
    • Leaché AD, (2009) Species tree discordance traces to phylogeographic clade boundaries in north american fence lizards (Sceloporus). Systematic Biology, 58, 547-559.
    • (2009) Systematic Biology , vol.58 , pp. 547-559
    • Leaché, A.D.1
  • 57
    • 70649096085 scopus 로고    scopus 로고
    • Species trees for spiny lizards (genus Sceloporus): Identifying points of concordance and conflict between nuclear and mitochondrial data
    • Leaché AD, (2010) Species trees for spiny lizards (genus Sceloporus): identifying points of concordance and conflict between nuclear and mitochondrial data. Molecular Phylogenetics and Evolution, 54, 162-171.
    • (2010) Molecular Phylogenetics and Evolution , vol.54 , pp. 162-171
    • Leaché, A.D.1
  • 58
    • 0036005516 scopus 로고    scopus 로고
    • Molecular systematics of the eastern fence lizard (Sceloporus undulatus): A comparison of parsimony, likelihood, and bayesian approaches
    • Leaché AD, Reeder TW, (2002) Molecular systematics of the eastern fence lizard (Sceloporus undulatus): a comparison of parsimony, likelihood, and bayesian approaches. Systematic Biology, 51, 44-68.
    • (2002) Systematic Biology , vol.51 , pp. 44-68
    • Leaché, A.D.1    Reeder, T.W.2
  • 59
    • 77951786304 scopus 로고    scopus 로고
    • Chromosome evolution and diversification in north american spiny lizards (genus Sceloporus)
    • Leaché A, Sites Jr J, (2010) Chromosome evolution and diversification in north american spiny lizards (genus Sceloporus). Cytogenetic and Genome Research, 127, 166-181.
    • (2010) Cytogenetic and Genome Research , vol.127 , pp. 166-181
    • Leaché, A.1    Sites, Jr.J.2
  • 60
    • 84892534014 scopus 로고    scopus 로고
    • Comparative species divergence across eight triplets of spiny lizards (Sceloporus) using genomic sequence data
    • Leaché AD, Harris RB, Maliska ME, Linkem CW, (2013a) Comparative species divergence across eight triplets of spiny lizards (Sceloporus) using genomic sequence data. Genome Biology and Evolution, 5, 2410-2419.
    • (2013) Genome Biology and Evolution , vol.5 , pp. 2410-2419
    • Leaché, A.D.1    Harris, R.B.2    Maliska, M.E.3    Linkem, C.W.4
  • 61
    • 84887319003 scopus 로고    scopus 로고
    • The influence of gene flow on species tree estimation: A simulation study
    • Leaché AD, Harris RB, Rannala B, Yang Z, (2013b) The influence of gene flow on species tree estimation: a simulation study. Systematic Biology, 63, 17-30.
    • (2013) Systematic Biology , vol.63 , pp. 17-30
    • Leaché, A.D.1    Harris, R.B.2    Rannala, B.3    Yang, Z.4
  • 62
    • 84888041789 scopus 로고    scopus 로고
    • Phylogeography of the trans-volcanic bunchgrass lizard (Sceloporus bicanthalis) across the highlands of south-eastern mexico
    • Leaché AD, Palacios JA, Minin VN, Bryson RW, (2013c) Phylogeography of the trans-volcanic bunchgrass lizard (Sceloporus bicanthalis) across the highlands of south-eastern mexico. Biological Journal of the Linnean Society, 110, 852-865.
    • (2013) Biological Journal of the Linnean Society , vol.110 , pp. 852-865
    • Leaché, A.D.1    Palacios, J.A.2    Minin, V.N.3    Bryson, R.W.4
  • 67
    • 17844367344 scopus 로고    scopus 로고
    • Hybridization as an invasion of the genome
    • Mallet J, (2005) Hybridization as an invasion of the genome. Trends in Ecology & Evolution, 20, 229-237.
    • (2005) Trends in Ecology & Evolution , vol.20 , pp. 229-237
    • Mallet, J.1
  • 68
    • 0033894219 scopus 로고    scopus 로고
    • Cladistic biogeography of the mexican transition zone
    • Marshall C, Liebherr J, (2000) Cladistic biogeography of the mexican transition zone. Journal of Biogeography, 27, 203-216.
    • (2000) Journal of Biogeography , vol.27 , pp. 203-216
    • Marshall, C.1    Liebherr, J.2
  • 71
    • 0034097468 scopus 로고    scopus 로고
    • Topal 2.0: Improved detection of mosaic sequences within multiple alignments
    • McGuire G, Wright F, (2000) Topal 2.0: improved detection of mosaic sequences within multiple alignments. Bioinformatics, 16, 130-134.
    • (2000) Bioinformatics , vol.16 , pp. 130-134
    • McGuire, G.1    Wright, F.2
  • 72
    • 27944474394 scopus 로고    scopus 로고
    • Alleles in space (ais): Computer software for the joint analysis of interindividual spatial and genetic information
    • Miller M, (2005) Alleles in space (ais): computer software for the joint analysis of interindividual spatial and genetic information. Journal of Heredity, 96, 722-724.
    • (2005) Journal of Heredity , vol.96 , pp. 722-724
    • Miller, M.1
  • 73
    • 58049218990 scopus 로고    scopus 로고
    • Topali v2: A rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops
    • Milne I, Lindner D, Bayer M, et al,. (2009) Topali v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops. Bioinformatics, 25, 126-127.
    • (2009) Bioinformatics , vol.25 , pp. 126-127
    • Milne, I.1    Lindner, D.2    Bayer, M.3
  • 74
    • 0034967295 scopus 로고    scopus 로고
    • Distinguishing migration from isolation: A markov chain monte carlo approach
    • Nielsen R, Wakeley J, (2001) Distinguishing migration from isolation: a markov chain monte carlo approach. Genetics, 158, 885-896.
    • (2001) Genetics , vol.158 , pp. 885-896
    • Nielsen, R.1    Wakeley, J.2
  • 75
    • 84894586637 scopus 로고    scopus 로고
    • On the biogeography of centipeda: A species-tree diffusion approach
    • Nylinder S, Lemey P, De, Bruyn M, et al,. (2014) On the biogeography of centipeda: A species-tree diffusion approach. Systematic Biology, 63, 178-191.
    • (2014) Systematic Biology , vol.63 , pp. 178-191
    • Nylinder, S.1    Lemey, P.2    De3    Bruyn, M.4
  • 76
    • 84902548476 scopus 로고    scopus 로고
    • Model choice for phylogeographic inference using a large set of models
    • Pelletier TA, Carstens BC, (2014) Model choice for phylogeographic inference using a large set of models. Molecular Ecology, 23, 3028-3043.
    • (2014) Molecular Ecology , vol.23 , pp. 3028-3043
    • Pelletier, T.A.1    Carstens, B.C.2
  • 77
    • 84866241745 scopus 로고    scopus 로고
    • Phylogeography of speciation: Allopatric divergence and secondary contact between outcrossing and selfing Clarkia
    • Pettengill JB, Moeller DA, (2012) Phylogeography of speciation: allopatric divergence and secondary contact between outcrossing and selfing Clarkia. Molecular Ecology, 21, 4578-4592.
    • (2012) Molecular Ecology , vol.21 , pp. 4578-4592
    • Pettengill, J.B.1    Moeller, D.A.2
  • 78
    • 0013648423 scopus 로고
    • Testing nominal species boundaries using gene flow statistics: The taxonomy of two hybridizing admiral butterflies (Limenitis: Nymphalidae)
    • Porter AH, (1990) Testing nominal species boundaries using gene flow statistics: the taxonomy of two hybridizing admiral butterflies (Limenitis: Nymphalidae). Systematic Biology, 39, 131-147.
    • (1990) Systematic Biology , vol.39 , pp. 131-147
    • Porter, A.H.1
  • 79
    • 84857317876 scopus 로고    scopus 로고
    • Identification of 104 rapidly-evolving nuclear protein-coding markers for amplification across scaled reptiles using genomic resources
    • Portik DM, Wood Jr PL, Grismer JL, Stanley EL, Jackman TR, (2012) Identification of 104 rapidly-evolving nuclear protein-coding markers for amplification across scaled reptiles using genomic resources. Conservation Genetics Resources, 4, 1-10.
    • (2012) Conservation Genetics Resources , vol.4 , pp. 1-10
    • Portik, D.M.1    Wood, Jr.P.L.2    Grismer, J.L.3    Stanley, E.L.4    Jackman, T.R.5
  • 80
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard JK, Stephens M, Donnelly P, (2000) Inference of population structure using multilocus genotype data. Genetics, 155, 945-959.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 81
    • 5344230543 scopus 로고    scopus 로고
    • accessed 5 March 2015
    • Rambaut A, Drummond A, (2007) Tracer v1. 4. http://tree.bio.ed.ac.uk/software/tracer/ (accessed 5 March 2015).
    • (2007) Tracer v1. 4
    • Rambaut, A.1    Drummond, A.2
  • 82
    • 0041817551 scopus 로고    scopus 로고
    • Bayes estimation of species divergence times and ancestral population sizes using dna sequences from multiple loci
    • Rannala B, Yang Z, (2003) Bayes estimation of species divergence times and ancestral population sizes using dna sequences from multiple loci. Genetics, 164, 1645-1656.
    • (2003) Genetics , vol.164 , pp. 1645-1656
    • Rannala, B.1    Yang, Z.2
  • 83
    • 33646423279 scopus 로고    scopus 로고
    • A step-wise approach to integrating phylogeographic and phylogenetic biogeographic perspectives on the history of a core north american warm deserts biota
    • Riddle B, Hafner D, (2006) A step-wise approach to integrating phylogeographic and phylogenetic biogeographic perspectives on the history of a core north american warm deserts biota. Journal of Arid Environments, 66, 435-461.
    • (2006) Journal of Arid Environments , vol.66 , pp. 435-461
    • Riddle, B.1    Hafner, D.2
  • 84
    • 0041386108 scopus 로고    scopus 로고
    • Mrbayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP, (2003) Mrbayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 85
    • 1342331102 scopus 로고    scopus 로고
    • Distruct: A program for the graphical display of population structure
    • Rosenberg NA, (2004) Distruct: a program for the graphical display of population structure. Molecular Ecology Notes, 4, 137-138.
    • (2004) Molecular Ecology Notes , vol.4 , pp. 137-138
    • Rosenberg, N.A.1
  • 86
    • 33845991479 scopus 로고    scopus 로고
    • Anonymous nuclear marker discovery in the eastern fence lizard, Sceloporus undulatus
    • Rosenblum E, Belfiore, Moritz C, (2007) Anonymous nuclear marker discovery in the eastern fence lizard, Sceloporus undulatus. Molecular Ecology Notes, 7, 113-116.
    • (2007) Molecular Ecology Notes , vol.7 , pp. 113-116
    • Rosenblum, E.1    Belfiore2    Moritz, C.3
  • 87
    • 84880063128 scopus 로고    scopus 로고
    • Influence of the geological history of the trans-mexican volcanic belt on the diversification of nolina parviflora (Asparagaceae: Nolinoideae)
    • Ruiz-Sanchez E, Specht CD, (2013) Influence of the geological history of the trans-mexican volcanic belt on the diversification of nolina parviflora (Asparagaceae: Nolinoideae). Journal of Biogeography, 40, 1336-1347.
    • (2013) Journal of Biogeography , vol.40 , pp. 1336-1347
    • Ruiz-Sanchez, E.1    Specht, C.D.2
  • 90
    • 0001883575 scopus 로고
    • Sceloporus horridus and S spinosus (Reptilia: Sauria) are separate species
    • Smith H, Chiszar D, (1992) Sceloporus horridus and S. spinosus (Reptilia: Sauria) are separate species. Bulletin of the Maryland Herpetological Society, 2, 44-52.
    • (1992) Bulletin of the Maryland Herpetological Society , vol.2 , pp. 44-52
    • Smith, H.1    Chiszar, D.2
  • 92
    • 80054752001 scopus 로고    scopus 로고
    • Comparative phylogeography of a coevolved community: Concerted population expansions in joshua trees and four Yucca moths
    • Smith CI, Tank S, Godsoe W, et al,. (2011) Comparative phylogeography of a coevolved community: concerted population expansions in joshua trees and four Yucca moths. PLoS One, 6, e25628.
    • (2011) PLoS One , vol.6 , pp. e25628
    • Smith, C.I.1    Tank, S.2    Godsoe, W.3
  • 93
    • 39049190992 scopus 로고    scopus 로고
    • Testing hypotheses of pleistocene population history using coalescent simulations: Phylogeography of the pygmy nuthatch (Sitta pygmaea)
    • Spellman GM, Klicka J, (2006) Testing hypotheses of pleistocene population history using coalescent simulations: phylogeography of the pygmy nuthatch (Sitta pygmaea). Proceedings of the Royal Society B: Biological Sciences, 273, 3057-3063.
    • (2006) Proceedings of the Royal Society B: Biological Sciences , vol.273 , pp. 3057-3063
    • Spellman, G.M.1    Klicka, J.2
  • 94
    • 33750403801 scopus 로고    scopus 로고
    • Raxml-vi-hpc: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A, (2006) Raxml-vi-hpc: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics, 22, 2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 96
    • 84864413626 scopus 로고    scopus 로고
    • The biogeography of mitochondrial and nuclear discordance in animals
    • Toews DP, Brelsford A, (2012) The biogeography of mitochondrial and nuclear discordance in animals. Molecular Ecology, 21, 3907-3930.
    • (2012) Molecular Ecology , vol.21 , pp. 3907-3930
    • Toews, D.P.1    Brelsford, A.2
  • 97
    • 41049084425 scopus 로고    scopus 로고
    • Rapid development of multiple nuclear loci for phylogenetic analysis using genomic resources: An example from squamate reptiles
    • Townsend TM, Alegre RE, Kelley ST, Wiens JJ, Reeder TW, (2008) Rapid development of multiple nuclear loci for phylogenetic analysis using genomic resources: an example from squamate reptiles. Molecular Phylogenetics and Evolution, 47, 129-142.
    • (2008) Molecular Phylogenetics and Evolution , vol.47 , pp. 129-142
    • Townsend, T.M.1    Alegre, R.E.2    Kelley, S.T.3    Wiens, J.J.4    Reeder, T.W.5
  • 98
    • 84871347028 scopus 로고    scopus 로고
    • Assessing model fit in phylogeographical investigations: An example from the north american sandbar willow salix melanopsis
    • Tsai YHE, Carstens BC, (2013) Assessing model fit in phylogeographical investigations: an example from the north american sandbar willow salix melanopsis. Journal of Biogeography, 40, 131-141
    • (2013) Journal of Biogeography , vol.40 , pp. 131-141
    • Tsai, Y.H.E.1    Carstens, B.C.2
  • 99
    • 0345908689 scopus 로고    scopus 로고
    • Phylogeny of the spiny lizards (Sceloporus) based on molecular and morphological evidence
    • Wiens JJ, Reeder TW, (1997) Phylogeny of the spiny lizards (Sceloporus) based on molecular and morphological evidence. Herpetological Monographs. 1-101.
    • (1997) Herpetological Monographs , pp. 1-101
    • Wiens, J.J.1    Reeder, T.W.2
  • 100
    • 70649100018 scopus 로고    scopus 로고
    • Phylogenetic relationships of phrynosomatid lizards based on nuclear and mitochondrial data, and a revised phylogeny for Sceloporus
    • Wiens JJ, Kuczynski CA, Arif S, Reeder TW, (2010) Phylogenetic relationships of phrynosomatid lizards based on nuclear and mitochondrial data, and a revised phylogeny for Sceloporus. Molecular Phylogenetics and Evolution, 54, 150-161.
    • (2010) Molecular Phylogenetics and Evolution , vol.54 , pp. 150-161
    • Wiens, J.J.1    Kuczynski, C.A.2    Arif, S.3    Reeder, T.W.4
  • 101
    • 79951566251 scopus 로고    scopus 로고
    • Improving marginal likelihood estimation for bayesian phylogenetic model selection
    • Xie W, Lewis PO, Fan Y, Kuo L, Chen MH, (2011) Improving marginal likelihood estimation for bayesian phylogenetic model selection. Systematic Biology, 60, 150-160.
    • (2011) Systematic Biology , vol.60 , pp. 150-160
    • Xie, W.1    Lewis, P.O.2    Fan, Y.3    Kuo, L.4    Chen, M.H.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.