Characterization of quinoa seed proteome combining different protein precipitation techniques: Improvement of knowledge of nonmodel plant proteomics

Journal of Separation Science

Volumn 38, Issue 6, 2015, Pages 1017-1025

  Capriotti, Anna Laura ^a   Cavaliere, Chiara ^a   Piovesana, Susy ^a   Stampachiacchiere, Serena ^a   Ventura, Salvatore ^a   Zenezini Chiozzi, Riccardo ^a   Laganà, Aldo ^a  

^a SAPIENZA UNIVERSITY OF ROME   (Italy)

Author keywords

High resolution mass spectrometry; Nonmodel plants; Plant proteomics; Protein precipitation; Quinoa proteins

Indexed keywords

ACETONE; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; MOLECULAR BIOLOGY; SEED; SPECTROMETRY; TRICHLOROACETIC ACID;

HIGH RESOLUTION MASS SPECTROMETRY; NONMODEL PLANTS; PLANT PROTEOMICS; PROTEIN PRECIPITATION; QUINOA PROTEINS;

PROTEINS;

ACETONE; PROTEOME; QUINOA SEED PROTEOME; RIBOSOME PROTEIN; SEED STORAGE PROTEIN; TRICHLOROACETIC ACID; UNCLASSIFIED DRUG; VEGETABLE PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CATALYSIS; CHENOPODIUM ALBUM; CHENOPODIUM QUINOA; GENE ONTOLOGY; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; HYDROPHOBICITY; NANO LIQUID CHROMATOGRAPHY; NONHUMAN; PLANT SEED; PRECIPITATION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DENATURATION; PROTEIN ISOLATION; PROTEIN PRECIPITATION; PROTEOMICS; QUALITATIVE ANALYSIS; QUANTITATIVE ANALYSIS; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; TANDEM MASS SPECTROMETRY; CHEMISTRY; ISOLATION AND PURIFICATION; PLANT; PROTEIN DATABASE; TWO DIMENSIONAL GEL ELECTROPHORESIS;

CHENOPODIUM QUINOA;

AMINO ACID SEQUENCE; CHEMICAL PRECIPITATION; CHENOPODIUM QUINOA; DATABASES, PROTEIN; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; PLANT PROTEINS; PLANTS; PROTEOME; PROTEOMICS; SEEDS; TANDEM MASS SPECTROMETRY;

EID: 84925345694     PISSN: 16159306     EISSN: 16159314     Source Type: Journal    
DOI: 10.1002/jssc.201401319     Document Type: Article

References (39)

1. Belton, P. S., Taylor, J. R. N., The Major Seed Storage Proteins of Spelt, Wheat, Sorghum, Millets and Pseudocereals. In Pseudocereals and Less Common Cereals, Springer-Verlag, Berlin Heidelberg 2002.
2. Vega-Galvez, A., Miranda, M., Vergara, J., Uribe, E., Puente, L., Martinez, E. A., J. Sci. Food Agric. 2010, 90, 2541-2547.
3. Repo-Carrasco, R., Espinoza, C., Jacobsen, S. E., Food Rev. Int. 2003, 19, 179-189.
4. Jacobsen, S. E., Ind. Crop. Prod. 1998, 7, 169-174.
5. Martinez, E. A., Veas, E., Jorquera, C., San Martin, R., Jara, P., J. Agron. Crop Sci. 2009, 195, 1-10.
6. Elke K., Dal Bello F., Gluten-Free Cereal Products and Beverages, Elsevier, Amsterdam 2008.
7. Asao, M., Watanabe, K., Food Sci. Technol. Res. 2010, 16, 163-168.
8. Takao, T., Watanabe, N., Yuhara, K., Itoh, S., Suda, S., Tsuruoka, Y., Nakatsugawa, K., Konishi, Y., Food Sci. Technol. Res. 2005, 11, 161-167.
9. Pas̈ko, P., Zagrodzki, P., Bartoń, H., Chłopicka, J., Gorinstein, S., Plant Foods Hum. Nutr. 2010, 65, 333-338.
10. Watanabe K., Ibuki A., Chen Y. C., Kawamura, Y., Mitsuanaga, T., J. Jpn. Soc. Food Sci. 2003, 50, 546-549.
11. Fairbanks, D. J., Burgener, K. W., Robison, L. R., Andersen, W. R., Ballon, E., Plant Breeding 1990, 104, 190-195.
12. Gorinstein, S., Drzewiecki, J., Delgado-Licon, E., Pawelzik, E., Martinez Ayala, A. L., Medina, O. J., Haruenkit, R., Trakhtenberg, S., Eur. Food Res. Technol. 2005, 221, 69-77.
13. Armengaud, J., Trapp, J., Pible, O., Geffard, O., Chaumot, A., Hartmann, E. M., J. Proteomics 2014, 105, 5-18.
14. Lee, J., Garrett, W. M., Cooper, B., J Sep Sci. 2007, 30, 2225-2230.
15. Aguilar, O., Glatz, C. E., Rito-Palomares, M., J. Sep. Sci. 2009, 32, 3223-3231.
16. Champagne, A., Boutry, M., Proteomics 2013, 13, 663-673.
17. Carpentier, S. C., Panis, B., Vertommen, A., Swennen, R., Sergeant, K., Renaut, J., Laukens, K., Witters, E., Samyn, B., Devreese, B., Mass Spectrom. Review 2008, 27, 354-377.
18. Wessel, D., Fluegge, U. I., Anal. Biochem. 1984, 138, 141-143.
19. Bradford, M. M., Anal. Biochem. 1976, 72, 248-253.
20. Searle, B. C., Proteomics 2010, 10, 1265-1269.
21. Nesvizhskii, A. I., Kolker, E., Aebersold, R., Anal. Chem. 2002, 74, 5383-5392
22. Nesvizhskii, A. I., Keller, A., Kolker, E., Aebersold, R., Anal. Chem. 2003, 75, 4646-4658.
23. Capriotti, A. L., Cavaliere, C., Foglia, P., Piovesana, S., Samperi, R., Stampachiacchiere, S., Laganà, A., Anal. Chim. Acta 2013, 800, 36-42.
24. Capriotti, A. L., Caruso, G., Cavaliere, C., Foglia, P., Piovesana, S., Samperi, R., Laganà, A., Anal. Bioanal. Chem. 2013, 29, 9301-9309.
25. Anstead, J. A., Hartson, S. D., Thompson, G. A., BMC Genomics 2013, 14, 764-776.
26. Junqueira, M., Spirin, V., Balbuena, T. S., Thomas, H., Adzhubei, I., Sunyaev, S., Shevchenko, A., J. Proteomics 2008, 71, 346-356.
27. Hurkman, W. J., Tanaka, C. K., Plant Physiol. 1986, 81, 802-806.
28. Booz, M. L., Travis, R. L., Phytochemistry 1981, 20, 1773-1779.
29. Wisniewski, J. R., Zougman, A, Nagaraj, N., Mann, M., Nat. Methods 2009, 6, 359-363.
30. Vertommen, A., Møller, A. L., Cordewener, J. H., Swennen, R., Panis, B., Finnie, C., America, A. H., Carpentier, S. C., J. Proteomics. 2011, 74, 1218-29
31. Zhang, M., Shen, S., J Sep Sci. 2013, 36, 2203-2209.
32. Saravanan, R. S., Jocelyn, K. C. R., Proteomics 2004, 4, 2522-2532.
33. Wu, F., Wang, M., Anal. Biochem. 1984, 139, 100-103.
34. Zellner, M., Winkler, W., Hayden, H., Diestinger, M., Eliasen, M., Gesslbauer, B., Miller, I., Chang, M., Kungl, A., Roth, E., Oehler, R., Electrophoresis 2005, 26, 2481-2489.
35. Wang, W., Tai, F., Chen, S., J. Sep. Sci. 2008, 31, 2032-2039.
36. Nakamura, R., Teshima, R., J. Proteomics 2013, 93, 40-49.
37. Santos, A., Van Ree, R., Int. Arch. Allergy Immunol. 2011, 155, 191-204.
38. Barderas, R., Villalba, M., Pascual, C. Y., Batanero, E., Rodríguez, R., J. Allergy Clin. Immunol. 2004, 113, 1192-119.
39. Vizcaíno, J. A., Deutsch, E. W., Wang, R., Csordas, A., Reisinger, F., Ríos, D., Dianes, J. A., Sun, Z., Farrah, T., Bandeira, N., Binz, P. A., Xenarios, I., Eisenacher, M., Mayer, G., Gatto, L., Campos, A., Chalkley, R. J., Kraus, H. J., Albar, J. P., Martinez-Bartolomé, S., Apweiler, R., Omenn, G. S., Martens, L., Jones, A. R., Hermjakob, H., Nat. Biotechnol. 2014, 30, 223-226.