Explicit DNase sequence bias modeling enables high-resolution transcription factor footprint detection

Nucleic Acids Research

Volumn 42, Issue 19, 2014, Pages 11865-11878

  Yardimci, Galip Gürkan ^a   Frank, Christopher L ^a,b   Crawford, Gregory E ^a,b   Ohler, Uwe ^b,c  

^a DUKE UNIVERSITY   (United States)

^b DUKE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^c MAX DELBRÜCK CENTER FOR MOLECULAR MEDICINE   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

DEOXYRIBONUCLEASE; GENOMIC DNA; TRANSCRIPTION FACTOR; CHROMATIN; DEOXYRIBONUCLEASE I;

ARTICLE; CHROMATIN STRUCTURE; CONSENSUS SEQUENCE; CONTROLLED STUDY; DNA FOOTPRINTING; DNA MICROARRAY; DNA SEQUENCE; HUMAN; INTERMETHOD COMPARISON; MATHEMATICAL MODEL; PREDICTION; PRIORITY JOURNAL; PROTEIN DNA INTERACTION; SEQUENCE ANALYSIS; BINDING SITE; BIOLOGICAL MODEL; CHEMISTRY; CHROMATIN; CHROMATIN IMMUNOPRECIPITATION; METABOLISM; NUCLEOTIDE MOTIF; PROCEDURES;

BINDING SITES; CHROMATIN; CHROMATIN IMMUNOPRECIPITATION; DEOXYRIBONUCLEASE I; DNA FOOTPRINTING; HUMANS; MODELS, GENETIC; NUCLEOTIDE MOTIFS; SEQUENCE ANALYSIS, DNA; TRANSCRIPTION FACTORS;

EID: 84925283402     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gku810     Document Type: Article

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