-
1
-
-
84887170660
-
Deep-sequencing analysis of the association between the quasispecies nature of the hepatitisCvirus core region and disease progression
-
Miura M, Maekawa S, Takano S, Komatsu N, Tatsumi A, Asakawa Y, Shindo K, Amemiya F, Nakayama Y, Inoue T, Sakamoto M, Yamashita A, Moriishi K, Enomoto N. 2013. Deep-sequencing analysis of the association between the quasispecies nature of the hepatitisCvirus core region and disease progression. J Virol 87:12541-12551. http://dx.doi.org/10.1128/JVI.00826-13.
-
(2013)
J Virol
, vol.87
, pp. 12541-12551
-
-
Miura, M.1
Maekawa, S.2
Takano, S.3
Komatsu, N.4
Tatsumi, A.5
Asakawa, Y.6
Shindo, K.7
Amemiya, F.8
Nakayama, Y.9
Inoue, T.10
Sakamoto, M.11
Yamashita, A.12
Moriishi, K.13
Enomoto, N.14
-
2
-
-
84869506027
-
The impact of quasispecies dynamics on the use of therapeutics
-
Perales C, Iranzo J, Manrubia SC, Domingo E. 2012. The impact of quasispecies dynamics on the use of therapeutics. Trends Microbiol 20: 595-603. http://dx.doi.org/10.1016/j.tim.2012.08.010.
-
(2012)
Trends Microbiol
, vol.20
, pp. 595-603
-
-
Perales, C.1
Iranzo, J.2
Manrubia, S.C.3
Domingo, E.4
-
3
-
-
84876577901
-
Hepatitis C virus adaptation to T-cell immune pressure
-
673240
-
Plauzolles A, Lucas M, Gaudieri S. 2013. Hepatitis C virus adaptation to T-cell immune pressure. ScientificWorldJournal 2013:673240. http://dx.doi.org/10.1155/2013/673240.
-
(2013)
ScientificWorldJournal
, vol.2013
-
-
Plauzolles, A.1
Lucas, M.2
Gaudieri, S.3
-
4
-
-
84864697529
-
A quantitative quasispecies theory-based model of virus escape mutation under immune selection
-
Woo HJ, Reifman J. 2012. A quantitative quasispecies theory-based model of virus escape mutation under immune selection. Proc Natl Acad Sci USA 109:12980-12985. http://dx.doi.org/10.1073/pnas.1117201109.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 12980-12985
-
-
Woo, H.J.1
Reifman, J.2
-
5
-
-
79952819924
-
+ T lymphocytes cross-recognize mutant simian immunodeficiency virus (SIV) sequences but fail to contain very early evolution and eventual fixation of epitope escape mutations during SIV infection
-
+ T lymphocytes cross-recognize mutant simian immunodeficiency virus (SIV) sequences but fail to contain very early evolution and eventual fixation of epitope escape mutations during SIV infection. J Virol 85:3746-3757. http://dx.doi.org/10.1128/JVI.02420-10.
-
(2011)
J Virol
, vol.85
, pp. 3746-3757
-
-
Cale, E.M.1
Hraber, P.2
Giorgi, E.E.3
Fischer, W.4
Bhattacharya, T.5
Leitner, T.6
Yeh, W.W.7
Gleasner, C.8
Green, L.D.9
Han, C.S.10
Korber, B.11
Letvin, N.L.12
-
6
-
-
18244397979
-
The outcome of hepatitis C virus infection is predicted by escape mutations in epitopes targeted by cytotoxic T lymphocytes
-
Erickson AL, Kimura Y, Igarashi S, Eichelberger J, Houghton M, Sidney J, McKinney D, Sette A, Hughes AL, Walker CM. 2001. The outcome of hepatitis C virus infection is predicted by escape mutations in epitopes targeted by cytotoxic T lymphocytes. Immunity 15:883-895. http://dx.doi.org/10.1016/S1074-7613(01)00245-X.
-
(2001)
Immunity
, vol.15
, pp. 883-895
-
-
Erickson, A.L.1
Kimura, Y.2
Igarashi, S.3
Eichelberger, J.4
Houghton, M.5
Sidney, J.6
McKinney, D.7
Sette, A.8
Hughes, A.L.9
Walker, C.M.10
-
7
-
-
84889240444
-
Acute emergence and reversion of influenza A virus quasispecies within CD8+ T cell antigenic peptides
-
Valkenburg SA, Quiñones-Parra S, Gras S, Komadina N, McVernon J, Wang Z, Halim H, Iannello P, Cole C, Laurie K, Kelso A, Rossjohn J, Doherty PC, Turner SJ, Kedzierska K. 2013. Acute emergence and reversion of influenza A virus quasispecies within CD8+ T cell antigenic peptides. Nat Commun 4:2663. http://dx.doi.org/10.1038/ncomms3663.
-
(2013)
Nat Commun
, vol.4
, pp. 2663
-
-
Valkenburg, S.A.1
Quiñones-Parra, S.2
Gras, S.3
Komadina, N.4
McVernon, J.5
Wang, Z.6
Halim, H.7
Iannello, P.8
Cole, C.9
Laurie, K.10
Kelso, A.11
Rossjohn, J.12
Doherty, P.C.13
Turner, S.J.14
Kedzierska, K.15
-
8
-
-
23044469970
-
Genetic variation in West Nile virus from naturally infected mosquitoes and birds suggests quasispecies structure and strong purifying selection
-
Jerzak G, Bernard KA, Kramer LD, Ebel GD. 2005. Genetic variation in West Nile virus from naturally infected mosquitoes and birds suggests quasispecies structure and strong purifying selection. J Gen Virol 86: 2175-2183. http://dx.doi.org/10.1099/vir.0.81015-0.
-
(2005)
J Gen Virol
, vol.86
, pp. 2175-2183
-
-
Jerzak, G.1
Bernard, K.A.2
Kramer, L.D.3
Ebel, G.D.4
-
9
-
-
33947590487
-
The West Nile virus-mutant spectrum is host-dependent and a determinant of mortality in mice
-
Jerzak GVS, Bernard K, Kramer LD, Shi PY, Ebel GD. 2007. The West Nile virus-mutant spectrum is host-dependent and a determinant of mortality in mice. Virology 360:469-476. http://dx.doi.org/10.1016/j.virol.2006.10.029.
-
(2007)
Virology
, vol.360
, pp. 469-476
-
-
Jerzak, G.V.S.1
Bernard, K.2
Kramer, L.D.3
Shi, P.Y.4
Ebel, G.D.5
-
10
-
-
84890419190
-
The role of innate immunity in conditioning mosquito susceptibility to West Nile virus
-
Prasad A, Brackney D, Ebel G. 2013. The role of innate immunity in conditioning mosquito susceptibility to West Nile virus. Viruses 5:3142-3170. http://dx.doi.org/10.3390/v5123142.
-
(2013)
Viruses
, vol.5
, pp. 3142-3170
-
-
Prasad, A.1
Brackney, D.2
Ebel, G.3
-
11
-
-
0344668868
-
Nucleotide sequence homology requirements of HIV-1-specific short hairpin RNA
-
Pusch O, Boden D, Silbermann R, Lee F, Tucker L, Ramratnam B. 2003. Nucleotide sequence homology requirements of HIV-1-specific short hairpin RNA. Nucleic Acids Res 31:6444-6449. http://dx.doi.org/10.1093/nar/gkg876.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 6444-6449
-
-
Pusch, O.1
Boden, D.2
Silbermann, R.3
Lee, F.4
Tucker, L.5
Ramratnam, B.6
-
12
-
-
13844320402
-
HIV-1 can escape from RNA interference by evolving an alternative structure in its RNA genome
-
Westerhout EM, Ooms M, Vink M, Das AT, Berkhout B. 2005. HIV-1 can escape from RNA interference by evolving an alternative structure in its RNA genome. Nucleic Acids Res 33:796-804. http://dx.doi.org/10.1093/nar/gki220.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 796-804
-
-
Westerhout, E.M.1
Ooms, M.2
Vink, M.3
Das, A.T.4
Berkhout, B.5
-
13
-
-
33744494279
-
Essential function in vivo for Dicer-2 in host defense against RNA viruses in Drosophila
-
Galiana-Arnoux D, Dostert C, Schneemann A, Hoffmann JA, Imler J-L. 2006. Essential function in vivo for Dicer-2 in host defense against RNA viruses in Drosophila. Nat Immunol 7:590-597. http://dx.doi.org/10.1038/ni1335.
-
(2006)
Nat Immunol
, vol.7
, pp. 590-597
-
-
Galiana-Arnoux, D.1
Dostert, C.2
Schneemann, A.3
Hoffmann, J.A.4
Imler, J.-L.5
-
14
-
-
10344257532
-
RNA interference acts as a natural antiviral response to O'nyongnyong virus (Alphavirus; Togaviridae) infection of Anopheles gambiae
-
Keene KM, Foy BD, Sanchez-Vargas I, Beaty BJ, Blair CD, Olson KE. 2004. RNA interference acts as a natural antiviral response to O'nyongnyong virus (Alphavirus; Togaviridae) infection of Anopheles gambiae. Proc Natl Acad Sci USA 101:17240-17245. http://dx.doi.org/10.1073/pnas.0406983101.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 17240-17245
-
-
Keene, K.M.1
Foy, B.D.2
Sanchez-Vargas, I.3
Beaty, B.J.4
Blair, C.D.5
Olson, K.E.6
-
15
-
-
58149399344
-
Alphavirusderived small RNAs modulate pathogenesis in disease vector mosquitoes
-
Myles KM, Wiley MR, Morazzani EM, Adelman ZN. 2008. Alphavirusderived small RNAs modulate pathogenesis in disease vector mosquitoes. Proc Natl Acad Sci USA 105:19938-19943. http://dx.doi.org/10.1073/pnas.0803408105.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 19938-19943
-
-
Myles, K.M.1
Wiley, M.R.2
Morazzani, E.M.3
Adelman, Z.N.4
-
16
-
-
33645979325
-
RNA interference directs innate immunity against viruses in adult Drosophila
-
Wang XH, Aliyari R, Li WX, Li HW, Kim K, Carthew R, Atkinson P, Ding SW. 2006. RNA interference directs innate immunity against viruses in adult Drosophila. Science 312:452-454. http://dx.doi.org/10.1126/science.1125694.
-
(2006)
Science
, vol.312
, pp. 452-454
-
-
Wang, X.H.1
Aliyari, R.2
Li, W.X.3
Li, H.W.4
Kim, K.5
Carthew, R.6
Atkinson, P.7
Ding, S.W.8
-
17
-
-
70049106407
-
RNAi targeting of West Nile virus in mosquito midguts promotes virus diversification
-
Brackney DE, Beane JE, Ebel GD. 2009. RNAi targeting of West Nile virus in mosquito midguts promotes virus diversification. PLoS Pathog 5:e1000502. http://dx.doi.org/10.1371/journal.ppat.1000502.
-
(2009)
PLoS Pathog
, vol.5
-
-
Brackney, D.E.1
Beane, J.E.2
Ebel, G.D.3
-
18
-
-
77953698834
-
Population variation of West Nile virus confers a host-specific fitness benefit in mosquitoes
-
Fitzpatrick KA, Deardorff ER, Pesko K, Brackney DE, Zhang B, Bedrick E, Shi PY, Ebel GD. 2010. Population variation of West Nile virus confers a host-specific fitness benefit in mosquitoes. Virology 404:89-95. http://dx.doi.org/10.1016/j.virol.2010.04.029.
-
(2010)
Virology
, vol.404
, pp. 89-95
-
-
Fitzpatrick, K.A.1
Deardorff, E.R.2
Pesko, K.3
Brackney, D.E.4
Zhang, B.5
Bedrick, E.6
Shi, P.Y.7
Ebel, G.D.8
-
19
-
-
0141483742
-
Transport of dsRNA into cells by the transmembrane protein SID-1
-
Feinberg EH, Hunter CP. 2003. Transport of dsRNA into cells by the transmembrane protein SID-1. Science 301:1545-1547. http://dx.doi.org/10.1126/science.1087117.
-
(2003)
Science
, vol.301
, pp. 1545-1547
-
-
Feinberg, E.H.1
Hunter, C.P.2
-
20
-
-
44949256129
-
West Nile virus infection of Drosophila melanogaster induces a protective RNAi response
-
Chotkowski HL, Ciota AT, Jia Y, Puig-Basagoiti F, Kramer LD, Shi PY, Glaser RL. 2008. West Nile virus infection of Drosophila melanogaster induces a protective RNAi response. Virology 377:197-206. http://dx.doi.org/10.1016/j.virol.2008.04.021.
-
(2008)
Virology
, vol.377
, pp. 197-206
-
-
Chotkowski, H.L.1
Ciota, A.T.2
Jia, Y.3
Puig-Basagoiti, F.4
Kramer, L.D.5
Shi, P.Y.6
Glaser, R.L.7
-
21
-
-
42049102564
-
Culture of Drosophila S2 cells and their use for RNAi-mediated loss-of-function studies and immunofluorescence microscopy
-
Rogers SL, Rogers GC. 2008. Culture of Drosophila S2 cells and their use for RNAi-mediated loss-of-function studies and immunofluorescence microscopy. Nat Protoc 3:606-611. http://dx.doi.org/10.1038/nprot.2008.18.
-
(2008)
Nat Protoc
, vol.3
, pp. 606-611
-
-
Rogers, S.L.1
Rogers, G.C.2
-
22
-
-
84886086043
-
Viruses and antiviral immunity in Drosophila
-
Xu J, Cherry S. 2014. Viruses and antiviral immunity in Drosophila. Dev Comp Immunol 42:67-84. http://dx.doi.org/10.1016/j.dci.2013.05.002.
-
(2014)
Dev Comp Immunol
, vol.42
, pp. 67-84
-
-
Xu, J.1
Cherry, S.2
-
23
-
-
0036107695
-
Infectious cDNA clone of the epidemic West Nile virus from New York City
-
Shi PY, Tilgner M, Lo MK, Kent KA, Bernard KA. 2002. Infectious cDNA clone of the epidemic West Nile virus from New York City. J Virol 76:5847-5856. http://dx.doi.org/10.1128/JVI.76.12.5847-5856.2002.
-
(2002)
J Virol
, vol.76
, pp. 5847-5856
-
-
Shi, P.Y.1
Tilgner, M.2
Lo, M.K.3
Kent, K.A.4
Bernard, K.A.5
-
24
-
-
77951227183
-
RNA interference modulates replication of dengue virus in Drosophila melanogaster cells
-
Mukherjee S, Hanley K. 2010. RNA interference modulates replication of dengue virus in Drosophila melanogaster cells. BMC Microbiol 10:127. http://dx.doi.org/10.1186/1471-2180-10-127.
-
(2010)
BMC Microbiol
, vol.10
, pp. 127
-
-
Mukherjee, S.1
Hanley, K.2
-
25
-
-
84861108474
-
Highly sensitive and specific detection of rare variants in mixed viral populations from massively parallel sequence data
-
Macalalad AR, Zody MC, Charlebois P, Lennon NJ, Newman RM, Malboeuf CM, Ryan EM, Boutwell CL, Power KA, Brackney DE, Pesko KN, Levin JZ, Ebel GD, Allen TM, Birren BW, Henn MR. 2012. Highly sensitive and specific detection of rare variants in mixed viral populations from massively parallel sequence data. PLoS Comput Biol 8:e1002417. http://dx.doi.org/10.1371/journal.pcbi.1002417.
-
(2012)
PLoS Comput Biol
, vol.8
-
-
Macalalad, A.R.1
Zody, M.C.2
Charlebois, P.3
Lennon, N.J.4
Newman, R.M.5
Malboeuf, C.M.6
Ryan, E.M.7
Boutwell, C.L.8
Power, K.A.9
Brackney, D.E.10
Pesko, K.N.11
Levin, J.Z.12
Ebel, G.D.13
Allen, T.M.14
Birren, B.W.15
Henn, M.R.16
-
26
-
-
33847245910
-
Comparison of siRNA-induced off-target RNA and protein effects
-
Aleman LM, Doench J, Sharp PA. 2007. Comparison of siRNA-induced off-target RNA and protein effects. RNA 13:385-395. http://dx.doi.org/10.1261/rna.352507.
-
(2007)
RNA
, vol.13
, pp. 385-395
-
-
Aleman, L.M.1
Doench, J.2
Sharp, P.A.3
-
27
-
-
33745612464
-
Widespread siRNA "off-target" transcript silencing mediated by seed region sequence complementarity
-
Jackson AL, Burchard J, Schelter J, Chau BN, Cleary M, Lim L, Linsley PS. 2006. Widespread siRNA "off-target" transcript silencing mediated by seed region sequence complementarity.RNA12:1179-1187. http://dx.doi.org/10.1261/rna.25706.
-
(2006)
RNA
, vol.12
, pp. 1179-1187
-
-
Jackson, A.L.1
Burchard, J.2
Schelter, J.3
Chau, B.N.4
Cleary, M.5
Lim, L.6
Linsley, P.S.7
-
28
-
-
33846007585
-
Minimizing off-target effects by using diced siRNAs for RNA interference
-
Myers JW, Chi JT, Gong D, Schaner ME, Brown PO, Ferrell JE. 2006. Minimizing off-target effects by using diced siRNAs for RNA interference. J RNAi Gene Silencing 2:181-194.
-
(2006)
J RNAi Gene Silencing
, vol.2
, pp. 181-194
-
-
Myers, J.W.1
Chi, J.T.2
Gong, D.3
Schaner, M.E.4
Brown, P.O.5
Ferrell, J.E.6
-
29
-
-
56349115840
-
The DExD/H-box helicase Dicer-2 mediates the induction of antiviral activity in Drosophila
-
Deddouche S, Matt N, Budd A, Mueller S, Kemp C, Galiana-Arnoux D, Dostert C, Antoniewski C, Hoffmann JA, Imler J-L. 2008. The DExD/H-box helicase Dicer-2 mediates the induction of antiviral activity in Drosophila. Nat Immunol 9:1425-1432. http://dx.doi.org/10.1038/ni.1664.
-
(2008)
Nat Immunol
, vol.9
, pp. 1425-1432
-
-
Deddouche, S.1
Matt, N.2
Budd, A.3
Mueller, S.4
Kemp, C.5
Galiana-Arnoux, D.6
Dostert, C.7
Antoniewski, C.8
Hoffmann, J.A.9
Imler, J.-L.10
-
30
-
-
84869217545
-
Secreted Vago restricts West Nile virus infection in Culex mosquito cells by activating the Jak-STAT pathway
-
Paradkar PN, Trinidad L, Voysey R, Duchemin J-B, Walker PJ. 2012. Secreted Vago restricts West Nile virus infection in Culex mosquito cells by activating the Jak-STAT pathway. Proc Natl Acad Sci USA 109:18915-18920. http://dx.doi.org/10.1073/pnas.1205231109.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 18915-18920
-
-
Paradkar, P.N.1
Trinidad, L.2
Voysey, R.3
Duchemin, J.-B.4
Walker, P.J.5
-
31
-
-
0142124143
-
Human immunodeficiency virus type 1 escape from RNA interference
-
Boden D, Pusch O, Lee F, Tucker L, Ramratnam B. 2003. Human immunodeficiency virus type 1 escape from RNA interference. J Virol 77:11531-11535. http://dx.doi.org/10.1128/JVI.77.21.11531-11535.2003.
-
(2003)
J Virol
, vol.77
, pp. 11531-11535
-
-
Boden, D.1
Pusch, O.2
Lee, F.3
Tucker, L.4
Ramratnam, B.5
-
32
-
-
11144239376
-
Poliovirus escape from RNA interference: short interfering RNA-target recognition and implications for therapeutic approaches
-
Gitlin L, Stone JK, Andino R. 2005. Poliovirus escape from RNA interference: short interfering RNA-target recognition and implications for therapeutic approaches. J Virol 79:1027-1035. http://dx.doi.org/10.1128/JVI.79.2.1027-1035.2005.
-
(2005)
J Virol
, vol.79
, pp. 1027-1035
-
-
Gitlin, L.1
Stone, J.K.2
Andino, R.3
-
33
-
-
84904600856
-
Replication of many human viruses is refractory to inhibition by endogenous cellular microRNAs
-
Bogerd HP, Skalsky RL, Kennedy EM, Furuse Y, Whisnant AW, Flores O, Schultz KL, Putnam N, Barrows NJ, Sherry B, Scholle F, Garcia-Blanco MA, Griffin DE, Cullen BR. 2014. Replication of many human viruses is refractory to inhibition by endogenous cellular microRNAs. J Virol 88:8065-8076. http://dx.doi.org/10.1128/JVI.00985-14.
-
(2014)
J Virol
, vol.88
, pp. 8065-8076
-
-
Bogerd, H.P.1
Skalsky, R.L.2
Kennedy, E.M.3
Furuse, Y.4
Whisnant, A.W.5
Flores, O.6
Schultz, K.L.7
Putnam, N.8
Barrows, N.J.9
Sherry, B.10
Scholle, F.11
Garcia-Blanco, M.A.12
Griffin, D.E.13
Cullen, B.R.14
-
34
-
-
84886066428
-
Is RNA interference a physiologically relevant innate antiviral immune response in mammals?
-
Cullen BR, Cherry S, ten Oever BR. 2013. Is RNA interference a physiologically relevant innate antiviral immune response in mammals?. Cell Host Microbe 14:374-378. http://dx.doi.org/10.1016/j.chom.2013.09.011.
-
(2013)
Cell Host Microbe
, vol.14
, pp. 374-378
-
-
Cullen, B.R.1
Cherry, S.2
ten Oever, B.R.3
-
35
-
-
84885635441
-
RNA interference functions as an antiviral immunity mechanism in mammals
-
Li Y, Lu J, Han Y, Fan X, Ding SW. 2013. RNA interference functions as an antiviral immunity mechanism in mammals. Science 342:231-234. http://dx.doi.org/10.1126/science.1241911.
-
(2013)
Science
, vol.342
, pp. 231-234
-
-
Li, Y.1
Lu, J.2
Han, Y.3
Fan, X.4
Ding, S.W.5
-
36
-
-
84885583303
-
Antiviral RNA interference in mammalian cells
-
Maillard PV, Ciaudo C, Marchais A, Li Y, Jay F, Ding SW, Voinnet O. 2013. Antiviral RNA interference in mammalian cells. Science 342:235-238. http://dx.doi.org/10.1126/science.1241930.
-
(2013)
Science
, vol.342
, pp. 235-238
-
-
Maillard, P.V.1
Ciaudo, C.2
Marchais, A.3
Li, Y.4
Jay, F.5
Ding, S.W.6
Voinnet, O.7
|