-
1
-
-
58149487646
-
Continuous viral escape and selection by autologous neutralizing antibodies in drug-naive human immunodeficiency virus controllers
-
Mahalanabis, M. et al. Continuous viral escape and selection by autologous neutralizing antibodies in drug-naive human immunodeficiency virus controllers. J. Virol. 83, 662-672 (2009).
-
(2009)
J. Virol
, vol.83
, pp. 662-672
-
-
Mahalanabis, M.1
-
2
-
-
82155191729
-
Hepatitis C virus evasion mechanisms from neutralizing antibodies
-
Di Lorenzo, C., Angus, A. G. & Patel, A. H. Hepatitis C virus evasion mechanisms from neutralizing antibodies. Viruses 3, 2280-2300 (2011).
-
(2011)
Viruses
, vol.3
, pp. 2280-2300
-
-
Di Lorenzo, C.1
Angus, A.G.2
Patel, A.H.3
-
3
-
-
11844260627
-
T cell response in hepatitis C virus infection
-
Neumann-Haefelin, C., Blum, H. E., Chisari, F. V. & Thimme, R. T cell response in hepatitis C virus infection. J. Clin. Virol. 32, 75-85 (2005).
-
(2005)
J. Clin. Virol
, vol.32
, pp. 75-85
-
-
Neumann-Haefelin, C.1
Blum, H.E.2
Chisari, F.V.3
Thimme, R.4
-
4
-
-
16944365445
-
Antiviral pressure exerted by HIV-1-specific cytotoxic T lymphocytes (CTLs) during primary infection demonstrated by rapid selection of CTL escape virus
-
Borrow, P. et al. Antiviral pressure exerted by HIV-1-specific cytotoxic T lymphocytes (CTLs) during primary infection demonstrated by rapid selection of CTL escape virus. Nat. Med. 3, 205-211 (1997).
-
(1997)
Nat. Med
, vol.3
, pp. 205-211
-
-
Borrow, P.1
-
5
-
-
70350595871
-
Hemagglutinin receptor binding avidity drives influenza A virus antigenic drift
-
Hensley, S. E. et al. Hemagglutinin receptor binding avidity drives influenza A virus antigenic drift. Science 326, 734-736 (2009).
-
(2009)
Science
, vol.326
, pp. 734-736
-
-
Hensley, S.E.1
-
6
-
-
0020620364
-
Cytotoxic T-cell immunity to influenza
-
McMichael, A. J., Gotch, F. M., Noble, G. R. & Beare, P. A. Cytotoxic T-cell immunity to influenza. N. Engl. J. Med. 309, 13-17 (1983).
-
(1983)
N. Engl. J. Med
, vol.309
, pp. 13-17
-
-
McMichael, A.J.1
Gotch, F.M.2
Noble, G.R.3
Beare, P.A.4
-
7
-
-
43949096181
-
Cross-recognition of avian H5N1 influenza virus by human cytotoxic T lymphocyte populations directed to human influenza A virus
-
Kreijtz, J. H. et al. Cross-recognition of avian H5N1 influenza virus by human cytotoxic T lymphocyte populations directed to human influenza A virus. J. Virol. 82, 5161-5166 (2008).
-
(2008)
J. Virol
, vol.82
, pp. 5161-5166
-
-
Kreijtz, J.H.1
-
8
-
-
34247161343
-
The loss of immunodominant epitopes affects interferongamma production and lytic activity of the human influenza virus-specific cytotoxic T lymphocyte response in vitro
-
Berkhoff, E. G. et al. The loss of immunodominant epitopes affects interferongamma production and lytic activity of the human influenza virus-specific cytotoxic T lymphocyte response in vitro. Clin. Exp. Immunol. 148, 296-306 (2007).
-
(2007)
Clin. Exp. Immunol
, vol.148
, pp. 296-306
-
-
Berkhoff, E.G.1
-
9
-
-
23844520881
-
Functional constraints of influenza A virus epitopes limit escape from cytotoxic T lymphocytes
-
Berkhoff, E. G. et al. Functional constraints of influenza A virus epitopes limit escape from cytotoxic T lymphocytes. J. Virol. 79, 11239-11246 (2005).
-
(2005)
J. Virol
, vol.79
, pp. 11239-11246
-
-
Berkhoff, E.G.1
-
10
-
-
2442519025
-
Sequence variation in the influenza A virus nucleoprotein associated with escape from cytotoxic T lymphocytes
-
Rimmelzwaan, G. F. et al. Sequence variation in the influenza A virus nucleoprotein associated with escape from cytotoxic T lymphocytes. Virus Res. 103, 97-100 (2004).
-
(2004)
Virus Res
, vol.103
, pp. 97-100
-
-
Rimmelzwaan, G.F.1
-
11
-
-
67449147145
-
The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection
-
Goonetilleke, N. et al. The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection. J. Exp. Med. 206, 1253-1272 (2009).
-
(2009)
J. Exp. Med
, vol.206
, pp. 1253-1272
-
-
Goonetilleke, N.1
-
12
-
-
38949200348
-
Vaccination and timing influence SIV immune escape viral dynamics in vivo
-
Loh, L., Petravic, J., Batten, C. J., Davenport, M. P. & Kent, S. J. Vaccination and timing influence SIV immune escape viral dynamics in vivo. PLoS Pathog. 4, e12 (2008).
-
(2008)
PLoS Pathog
, vol.4
-
-
Loh, L.1
Petravic, J.2
Batten, C.J.3
Davenport, M.P.4
Kent, S.J.5
-
13
-
-
0032787912
-
Antigenic drift of influenza A (H3N2) virus in a persistently infected immunocompromised host is similar to that occurring in the community
-
McMinn, P., Carrello, A., Cole, C., Baker, D. & Hampson, A. Antigenic drift of influenza A (H3N2) virus in a persistently infected immunocompromised host is similar to that occurring in the community. Clin. Infect. Dis. 29, 456-458 (1999).
-
(1999)
Clin. Infect. Dis
, vol.29
, pp. 456-458
-
-
McMinn, P.1
Carrello, A.2
Cole, C.3
Baker, D.4
Hampson, A.5
-
14
-
-
39649122106
-
HLA class i supertypes: A revised and updated classification
-
Sidney, J., Peters, B., Frahm, N., Brander, C. & Sette, A. HLA class I supertypes: a revised and updated classification. BMC Immunol. 9, 1 (2008).
-
(2008)
BMC Immunol
, vol.9
, pp. 1
-
-
Sidney, J.1
Peters, B.2
Frahm, N.3
Brander, C.4
Sette, A.5
-
16
-
-
0025992913
-
Preneoplastic changes of xenotransplanted human distal airway epithelium induced by systemic administration of 4-nitroquinoline-1-oxide to host nude mice
-
Kitamura, H. et al. Preneoplastic changes of xenotransplanted human distal airway epithelium induced by systemic administration of 4-nitroquinoline-1-oxide to host nude mice. Carcinogenesis 12, 2023-2029 (1991).
-
(1991)
Carcinogenesis
, vol.12
, pp. 2023-2029
-
-
Kitamura, H.1
-
17
-
-
0026585781
-
RAG-1-deficient mice have no mature B and T lymphocytes
-
Mombaerts, P. et al. RAG-1-deficient mice have no mature B and T lymphocytes. Cell 68, 869-877 (1992).
-
(1992)
Cell
, vol.68
, pp. 869-877
-
-
Mombaerts, P.1
-
18
-
-
77958146768
-
Protective efficacy of cross-reactive CD8 T cells recognising mutant viral epitopes depends on peptide-MHC-I structural interactions and T cell activation threshold
-
Valkenburg, S. A. et al. Protective efficacy of cross-reactive CD8 T cells recognising mutant viral epitopes depends on peptide-MHC-I structural interactions and T cell activation threshold. PLoS Pathog. 6, e1001039 (2010).
-
(2010)
PLoS Pathog
, vol.6
-
-
Valkenburg, S.A.1
-
19
-
-
66149134073
-
Transience of MHC Class I-restricted antigen presentation after influenza A virus infection
-
Mintern, J. D. et al. Transience of MHC Class I-restricted antigen presentation after influenza A virus infection. Proc. Natl Acad. Sci. USA 106, 6724-6729 (2009).
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 6724-6729
-
-
Mintern, J.D.1
-
20
-
-
0027974989
-
The threedimensional structure of H-2Db at 2.4A resolution: Implications for antigendeterminant selection
-
Young, A. C., Zhang, W., Sacchettini, J. C. & Nathenson, S. G. The threedimensional structure of H-2Db at 2.4A resolution: implications for antigendeterminant selection. Cell 76, 39-50 (1994).
-
(1994)
Cell
, vol.76
, pp. 39-50
-
-
Young, A.C.1
Zhang, W.2
Sacchettini, J.C.3
Nathenson, S.G.4
-
21
-
-
20144386628
-
Lack of prominent peptide-major histocompatibility complex features limits repertoire diversity in virus-specific CD8() T cell populations
-
Turner, S. J. et al. Lack of prominent peptide-major histocompatibility complex features limits repertoire diversity in virus-specific CD8() T cell populations. Nat. Immunol. 6, 382-389 (2005).
-
(2005)
Nat. Immunol
, vol.6
, pp. 382-389
-
-
Turner, S.J.1
-
22
-
-
0030436878
-
Role of non-anchor residues of Db-restricted peptides in class i binding and TCR triggering
-
Sigal, L. J. & Wylie, D. E. Role of non-anchor residues of Db-restricted peptides in class I binding and TCR triggering. Mol. Immunol. 33, 1323-1333 (1996).
-
(1996)
Mol. Immunol
, vol.33
, pp. 1323-1333
-
-
Sigal, L.J.1
Wylie, D.E.2
-
23
-
-
0043076183
-
Differential antigen presentation regulates the changing patterns of CD8 T cell immunodominance in primary and secondary influenza virus infections
-
Crowe, S. R. et al. Differential antigen presentation regulates the changing patterns of CD8 T cell immunodominance in primary and secondary influenza virus infections. J. Exp. Med. 198, 399-410 (2003).
-
(2003)
J. Exp. Med
, vol.198
, pp. 399-410
-
-
Crowe, S.R.1
-
24
-
-
0032100720
-
Virus-specific CD8 T cells in primary and secondary influenza pneumonia
-
Flynn, K. J. et al. Virus-specific CD8 T cells in primary and secondary influenza pneumonia. Immunity 8, 683-691 (1998).
-
(1998)
Immunity
, vol.8
, pp. 683-691
-
-
Flynn, K.J.1
-
25
-
-
0034608650
-
Viral escape by selection of cytotoxic T cell-resistant variants in influenza A virus pneumonia
-
Price, G. E., Ou, R., Jiang, H., Huang, L. & Moskophidis, D. Viral escape by selection of cytotoxic T cell-resistant variants in influenza A virus pneumonia. J. Exp. Med. 191, 1853-1867 (2000).
-
(2000)
J. Exp. Med
, vol.191
, pp. 1853-1867
-
-
Price, G.E.1
Ou, R.2
Jiang, H.3
Huang, L.4
Moskophidis, D.5
-
26
-
-
34250846385
-
Heterogeneity of effector phenotype for acute phase and memory influenza A virus-specific CTL
-
Jenkins, M. R., Kedzierska, K., Doherty, P. C. & Turner, S. J. Heterogeneity of effector phenotype for acute phase and memory influenza A virus-specific CTL. J. Immunol. 179, 64-70 (2007).
-
(2007)
J. Immunol
, vol.179
, pp. 64-70
-
-
Jenkins, M.R.1
Kedzierska, K.2
Doherty, P.C.3
Turner, S.J.4
-
27
-
-
77953195865
-
Primary CTL response magnitude in mice is determined by the extent of naive T cell recruitment and subsequent clonal expansion
-
La Gruta, N. L. et al. Primary CTL response magnitude in mice is determined by the extent of naive T cell recruitment and subsequent clonal expansion. J. Clin. Invest. 120, 1885-1894 (2010).
-
(2010)
J. Clin. Invest
, vol.120
, pp. 1885-1894
-
-
La Gruta, N.L.1
-
28
-
-
33745116185
-
Early establishment of diverse TCR profiles for influenzaspecific CD62Lhi CD8 memory T cells
-
Kedzierska, K. et al. Early establishment of diverse TCR profiles for influenzaspecific CD62Lhi CD8 memory T cells. Proc. Natl Acad. Sci. USA 103, 9184-9189 (2006).
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 9184-9189
-
-
Kedzierska, K.1
-
29
-
-
0037143718
-
Rescue of influenza B virus from eight plasmids
-
Hoffmann, E. et al. Rescue of influenza B virus from eight plasmids. Proc. Natl Acad. Sci. USA 99, 11411-11416 (2002).
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 11411-11416
-
-
Hoffmann, E.1
-
30
-
-
58049208212
-
Complete modification of TCR specificity and repertoire selection does not perturb a CD8 T cell immunodominance hierarchy
-
Kedzierska, K. et al. Complete modification of TCR specificity and repertoire selection does not perturb a CD8 T cell immunodominance hierarchy. Proc. Natl Acad. Sci. USA 105, 19408-19413 (2008).
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 19408-19413
-
-
Kedzierska, K.1
-
31
-
-
77956045410
-
Assessing the viral fitness of oseltamivir-resistant influenza viruses in ferrets, using a competitive-mixtures model
-
Hurt, A. C. et al. Assessing the viral fitness of oseltamivir-resistant influenza viruses in ferrets, using a competitive-mixtures model. J. Virol. 84, 9427-9438 (2010).
-
(2010)
J. Virol
, vol.84
, pp. 9427-9438
-
-
Hurt, A.C.1
-
32
-
-
20244386270
-
Rapid viral escape at an immunodominant simian-human immunodeficiency virus cytotoxic T-lymphocyte epitope exacts a dramatic fitness cost
-
Fernandez, C. et al. Rapid viral escape at an immunodominant simian-human immunodeficiency virus cytotoxic T-lymphocyte epitope exacts a dramatic fitness cost. J. Virol. 79, 5721-5731 (2005).
-
(2005)
J. Virol
, vol.79
, pp. 5721-5731
-
-
Fernandez, C.1
-
33
-
-
20044369940
-
Full restoration of viral fitness by multiple compensatory co-mutations in the nucleoprotein of influenza A virus cytotoxic T-lymphocyte escape mutants
-
Rimmelzwaan, G. F. et al. Full restoration of viral fitness by multiple compensatory co-mutations in the nucleoprotein of influenza A virus cytotoxic T-lymphocyte escape mutants. J. Gen. Virol. 86, 1801-1805 (2005).
-
(2005)
J. Gen. Virol
, vol.86
, pp. 1801-1805
-
-
Rimmelzwaan, G.F.1
-
34
-
-
0141702339
-
Population dynamics of rapid fixation in cytotoxic T lymphocyte escape mutants of influenza A
-
Gog, J., Rimmelzwaan, G., Osterhaus, A. & Grenfell, B. Population dynamics of rapid fixation in cytotoxic T lymphocyte escape mutants of influenza A. Proc. Natl Acad. Sci. USA 100, 11143-11147 (2003).
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 11143-11147
-
-
Gog, J.1
Rimmelzwaan, G.2
Osterhaus, A.3
Grenfell, B.4
-
35
-
-
0037165969
-
Evidence of HIV-1 adaptation to HLA-restricted immune responses at a population level
-
Moore, C. et al. Evidence of HIV-1 adaptation to HLA-restricted immune responses at a population level. Science 296, 1439-1443 (2002).
-
(2002)
Science
, vol.296
, pp. 1439-1443
-
-
Moore, C.1
-
36
-
-
23844512588
-
The pigtail macaque MHC class i allele Mane-A 10 presents an immundominant SIV Gag epitope: Identification, tetramer development and implications of immune escape and reversion
-
Smith, M. Z. et al. The pigtail macaque MHC class I allele Mane-A 10 presents an immundominant SIV Gag epitope: identification, tetramer development and implications of immune escape and reversion. J. Med. Primatol. 34, 282-293 (2005).
-
(2005)
J. Med. Primatol
, vol.34
, pp. 282-293
-
-
Smith, M.Z.1
-
37
-
-
73549117452
-
Clinical features of the initial cases of 2009 pandemic influenza A (H1N1) virus infection in China
-
Cao, B. et al. Clinical features of the initial cases of 2009 pandemic influenza A (H1N1) virus infection in China. N. Engl. J. Med. 361, 2507-2517 (2009).
-
(2009)
N. Engl. J. Med
, vol.361
, pp. 2507-2517
-
-
Cao, B.1
-
38
-
-
0030031475
-
Immune CD4 T cells promote the clearance of influenza virus from major histocompatibility complex class II -/-respiratory epithelium
-
Topham, D. J., Tripp, R. A., Sarawar, S. R., Sangster, M. Y. & Doherty, P. C. Immune CD4 T cells promote the clearance of influenza virus from major histocompatibility complex class II -/-respiratory epithelium. J. Virol. 70, 1288-1291 (1996).
-
(1996)
J. Virol
, vol.70
, pp. 1288-1291
-
-
Topham, D.J.1
Tripp, R.A.2
Sarawar, S.R.3
Sangster, M.Y.4
Doherty, P.C.5
-
39
-
-
0033928393
-
Antigenic drift in the influenza A virus (H3N2) nucleoprotein and escape from recognition by cytotoxic T lymphocytes
-
Voeten, J. T. et al. Antigenic drift in the influenza A virus (H3N2) nucleoprotein and escape from recognition by cytotoxic T lymphocytes. J. Virol. 74, 6800-6807 (2000).
-
(2000)
J. Virol
, vol.74
, pp. 6800-6807
-
-
Voeten, J.T.1
-
40
-
-
84875873620
-
Preemptive priming readily overcomes structure-based mechanisms of virus escape
-
Valkenburg, S. et al. Preemptive priming readily overcomes structure-based mechanisms of virus escape. Proc. Natl Acad. Sci. USA 110, 5570-5575 (2013).
-
(2013)
Proc. Natl Acad. Sci. USA
, vol.110
, pp. 5570-5575
-
-
Valkenburg, S.1
-
41
-
-
10344231446
-
T cell receptor recognition motifs govern immune escape patterns in acute SIV infection
-
Price, D. A. et al. T cell receptor recognition motifs govern immune escape patterns in acute SIV infection. Immunity 21, 793-803 (2004).
-
(2004)
Immunity
, vol.21
, pp. 793-803
-
-
Price, D.A.1
-
42
-
-
62849092944
-
Visualizing CTL activity for different CD8 effector T cells supports the idea that lower TCR/epitope avidity may be advantageous for target cell killing
-
Jenkins, M. R. et al. Visualizing CTL activity for different CD8 effector T cells supports the idea that lower TCR/epitope avidity may be advantageous for target cell killing. Cell Death Differ. 16, 537-542 (2009).
-
(2009)
Cell Death Differ
, vol.16
, pp. 537-542
-
-
Jenkins, M.R.1
-
43
-
-
14844346775
-
Differential regulation of granzyme and perforin in effector and memory T cells following smallpox immunization
-
Rock, M. T. et al. Differential regulation of granzyme and perforin in effector and memory T cells following smallpox immunization. J. Immunol. 174, 3757-3764 (2005).
-
(2005)
J. Immunol
, vol.174
, pp. 3757-3764
-
-
Rock, M.T.1
-
44
-
-
29244462802
-
Identification of protective and non-protective T cell epitopes in influenza
-
Crowe, S. R., Miller, S. C. & Woodland, D. L. Identification of protective and non-protective T cell epitopes in influenza. Vaccine 24, 452-456 (2006).
-
(2006)
Vaccine
, vol.24
, pp. 452-456
-
-
Crowe, S.R.1
Miller, S.C.2
Woodland, D.L.3
-
45
-
-
0035559445
-
Universal primer set for the full-length amplification of all influenza A viruses
-
Hoffmann, E., Stech, J., Guan, Y., Webster, R. G. & Perez, D. R. Universal primer set for the full-length amplification of all influenza A viruses. Arch. Virol. 146, 2275-2289 (2001).
-
(2001)
Arch. Virol
, vol.146
, pp. 2275-2289
-
-
Hoffmann, E.1
Stech, J.2
Guan, Y.3
Webster, R.G.4
Perez, D.R.5
-
46
-
-
0034889233
-
Functional avidity maturation of CD8() T cells without selection of higher affinity TCR
-
Slifka, M. K. & Whitton, J. L. Functional avidity maturation of CD8() T cells without selection of higher affinity TCR. Nat. Immunol. 2, 711-717 (2001).
-
(2001)
Nat. Immunol
, vol.2
, pp. 711-717
-
-
Slifka, M.K.1
Whitton, J.L.2
-
47
-
-
0027879008
-
Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants
-
Kabsch, W. Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants. J. Appl. Cryst. 26, 795-800 (1993).
-
(1993)
J. Appl. Cryst
, vol.26
, pp. 795-800
-
-
Kabsch, W.1
-
48
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
The CCP4 suite: programs for protein crystallography. Acta Crystallogr. D Biol. Crystallogr. 50, 760-763 (1994).
-
(1994)
Acta Crystallogr. D Biol. Crystallogr
, vol.50
, pp. 760-763
-
-
-
49
-
-
34447508216
-
Phaser crystallographic software
-
McCoy, A. J. et al. Phaser Crystallographic Software. J Appl Cryst 40, 658-674 (2007).
-
(2007)
J Appl Cryst
, vol.40
, pp. 658-674
-
-
McCoy, A.J.1
-
50
-
-
60549106099
-
Clonal expansions and loss of receptor diversity in the naive CD8 T cell repertoire of aged mice
-
Ahmed, M. et al. Clonal expansions and loss of receptor diversity in the naive CD8 T cell repertoire of aged mice. J. Immunol. 182, 784-792 (2009).
-
(2009)
J. Immunol
, vol.182
, pp. 784-792
-
-
Ahmed, M.1
-
52
-
-
84861205414
-
Loss of anti-viral immunity by infection with a virus encoding a cross-reactive pathogenic epitope
-
Chen, A. T. et al. Loss of anti-viral immunity by infection with a virus encoding a cross-reactive pathogenic epitope. PLoS Pathog. 8, e1002633 (2012).
-
(2012)
PLoS Pathog
, vol.8
-
-
Chen, A.T.1
|