Structures of the human Pals1 PDZ domain with and without ligand suggest gated access of Crb to the PDZ peptide-binding groove

Acta Crystallographica Section D: Biological Crystallography

Volumn 71, Issue , 2015, Pages 555-564

  Ivanova, Marina E ^a   Fletcher, Georgina C ^a   O'Reilly, Nicola ^a   Purkiss, Andrew G ^a   Thompson, Barry J ^a   McDonald, Neil Q ^a,b  

^a IMPERIAL CANCER RESEARCH FUND   (United Kingdom)

^b UNIVERSITY OF LONDON   (United Kingdom)

Author keywords

cell polarity; Crb; epithelia; PDZ domains; stardust

Indexed keywords

CARRIER PROTEIN; CRB1 PROTEIN, HUMAN; CRUMBS PROTEIN, DROSOPHILA; DROSOPHILA PROTEIN; EYE PROTEIN; GUANYLATE KINASE; MEMBRANE PROTEIN; MPP5 PROTEIN, HUMAN; NERVE PROTEIN; NUCLEOSIDE MONOPHOSPHATE KINASE; PROTEIN BINDING; SDT PROTEIN, DROSOPHILA;

ANIMAL; CHEMISTRY; DROSOPHILA MELANOGASTER; GENETICS; HUMAN; METABOLISM; PROTEIN MOTIF; PROTEIN QUATERNARY STRUCTURE; PROTEIN TERTIARY STRUCTURE;

AMINO ACID MOTIFS; ANIMALS; DROSOPHILA MELANOGASTER; DROSOPHILA PROTEINS; EYE PROTEINS; GUANYLATE KINASE; HUMANS; MEMBRANE PROTEINS; MEMBRANE TRANSPORT PROTEINS; NERVE TISSUE PROTEINS; NUCLEOSIDE-PHOSPHATE KINASE; PROTEIN BINDING; PROTEIN STRUCTURE, QUATERNARY; PROTEIN STRUCTURE, TERTIARY;

EID: 84924760420     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S139900471402776X     Document Type: Article

References (39)

1. Adams, P. D. et al. (2010). Acta Cryst. D66, 213-221.
2. Bachmann, A., Schneider, M., Theilenberg, E., Grawe, F. & Knust, E. (2001). Nature (London), 414, 638-643.
3. Berk, L. C. J. van den, Landi, E., Walma, T., Vuister, G. W., Dente, L. & Hendriks, W. J. (2007). Biochemistry, 46, 13629-13637.
4. Bhattacharya, S., Ju, J. H., Orlova, N., Khajeh, J. A., Cowburn, D. & Bu, Z. (2013). J. Mol. Biol. 425, 2509-2528.
5. Bilder, D., Schober, M. & Perrimon, N. (2003). Nature Cell Biol. 5, 53-58.
6. Chang, B. H., Gujral, T. S., Karp, E. S., BuKhalid, R., Grantcharova, V. P. & MacBeath, G. (2011). Chem. Biol. 18, 1143-1152.
7. Chen, Y., Sheng, R., Källberg, M., Silkov, A., Tun, M. P., Bhardwaj, N., Kurilova, S., Hall, R. A., Honig, B., Lu, H. & Cho, W. (2012). Mol. Cell, 46, 226-237.
8. Dostál, L., Misselwitz, R. & Welfle, H. (2005). Biochemistry, 44, 8387-8396.
9. Emsley, P., Lohkamp, B., Scott, W. G. & Cowtan, K. (2010). Acta Cryst. D66, 486-501.
10. Fletcher, G. C., Lucas, E. P., Brain, R., Tournier, A. & Thompson, B. J. (2012). Curr. Biol. 221116-1122.
11. Guettler, S., Vartiainen, M. K., Miralles, F., Larijani, B. & Treisman, R. (2008). Mol. Cell. Biol. 28, 732-742.
12. Harris, B. Z. & Lim, W. A. (2001). J. Cell Sci. 114, 3219-3231.
13. Heyduk, T. & Lee, J. C. (1990). Proc. Natl Acad. Sci. USA, 87, 1744-1748.
14. Hurd, T. W., Gao, L., Roh, M. H., Macara, I. G. & Margolis, B. (2003). Nature Cell Biol. 5, 137-142.
15. Kaya, A. I., Lokits, A. D., Gilbert, J. A., Iverson, T. M., Meiler, J. & Hamm, H. E. (2014). J. Biol. Chem. 289, 24475-24487.
16. Kelley, L. A. & Sternberg, M. J. (2009). Nature Protoc. 4, 363-371.
17. Kempkens, O., Médina, E., Fernandez-Ballester, G., Ozüyaman, S., Le Bivic, A., Serrano, L. & Knust, E. (2006). Eur. J. Cell Biol. 85, 753-767.
18. Koch, C., Heine, A. & Klebe, G. (2011). Biochim. Biophys. Acta, 1810, 879-887.
19. Lenfant, N., Polanowska, J., Bamps, S., Omi, S., Borg, J.-P. & Reboul, J. (2010). BMC Genomics, 11, 671.
20. Li, Y., Wei, Z., Yan, Y., Wan, Q., Du, Q. & Zhang, M. (2014). Proc. Natl Acad. Sci. USA, 111, 17444-17449.
21. Makarova, O., Roh, M. H., Liu, C. J., Laurinec, S. & Margolis, B. (2003). Gene, 302, 21-29.
22. McCoy, A. J., Grosse-Kunstleve, R. W., Adams, P. D., Winn, M. D., Storoni, L. C. & Read, R. J. (2007). J. Appl. Cryst. 40, 658-674.
23. Nomme, J., Fanning, A. S., Caffrey, M., Lye, M. F., Anderson, J. M. & Lavie, A. (2011). J. Biol. Chem. 286, 43352-43360.
24. Pan, L., Chen, J., Yu, J., Yu, H. & Zhang, M. (2011). J. Biol. Chem. 286, 40069-40074.
25. Penkert, R. R., DiVittorio, H. M. & Prehoda, K. E. (2004). Nature Struct. Mol. Biol. 11, 1122-1127.
26. Peterson, F. C., Penkert, R. R., Volkman, B. F. & Prehoda, K. E. (2004). Mol. Cell, 13, 665-676.
27. Raghuram, V., Hormuth, H. & Foskett, J. K. (2003). Proc. Natl Acad. Sci. USA, 100, 9620-9625.
28. Roh, M. H., Makarova, O., Liu, C.-J., Shin, K., Lee, S., Laurinec, S., Goyal, M., Wiggins, R. & Margolis, B. (2002). J. Cell Biol. 157, 161-172.
29. Songyang, Z., Fanning, A. S., Fu, C., Xu, J., Marfatia, S. M., Chishti, A. H., Crompton, A., Chan, A. C., Anderson, J. M. & Cantley, L. C. (1997). Science, 275, 73-77.
30. Subbaiah, V. K., Kranjec, C., Thomas, M. & Banks, L. (2011). Biochem. J. 439, 195-205.
31. Tepass, U. (2012). Annu. Rev. Cell Dev. Biol. 28, 655-685.
32. Tyler, R. C., Peterson, F. C. & Volkman, B. F. (2010). Biochemistry, 49, 951-957.
33. Whitney, D. S., Peterson, F. C. & Volkman, B. F. (2011). Structure, 19, 1711-1722.
34. Winter, G., Lobley, C. M. C. & Prince, S. M. (2013). Acta Cryst. D69, 1260-1273.
35. Yang, L., Wu, L., Yin, X., Chen, N., Li, G. & Ma, Z. (2014). Mol. Vis. 20, 359-367.
36. Zhang, Y., Appleton, B. A., Wu, P., Wiesmann, C. & Sidhu, S. S. (2007). Protein Sci. 16, 1738-1750.
37. Zhang, Y., Dasgupta, J., Ma, R. Z., Banks, L., Thomas, M. & Chen, X. S. (2007). J. Virol. 81, 3618-3626.
38. Zhou, W. & Hong, Y. (2012). Development, 139, 2891-2896.
39. Zimmermann, P., Meerschaert, K., Reekmans, G., Leenaerts, I., Small, J. V., Vandekerckhove, J., David, G. & Gettemans, J. (2002). Mol. Cell, 9, 1215-1225.