-
2
-
-
79551689395
-
Seasonal and geographic differences in treatmentseeking and household cost of febrile illness among children in Malawi
-
Ewing VL, Lalloo DG, Phiri KS, Roca-Feltrer A, Mangham LJ, SanJoaquin MA. Seasonal and geographic differences in treatmentseeking and household cost of febrile illness among children in Malawi. Malar J 2011;10:32.
-
(2011)
Malar J
, vol.10
, pp. 32
-
-
Ewing, V.L.1
Lalloo, D.G.2
Phiri, K.S.3
Roca-Feltrer, A.4
Mangham, L.J.5
SanJoaquin, M.A.6
-
3
-
-
84856357842
-
Lack of decline in childhood malaria, Malawi, 2001-2010
-
Roca-Feltrer A, Kwizombe CJ, Sanjoaquin MA, et al. Lack of decline in childhood malaria, Malawi, 2001-2010. Emerg Infect Dis 2012;18:272-8.
-
(2012)
Emerg Infect Dis
, vol.18
, pp. 272-278
-
-
Roca-Feltrer, A.1
Kwizombe, C.J.2
Sanjoaquin, M.A.3
-
4
-
-
84857644717
-
Malaria control in Malawi: Current status and directions for the future
-
Mathanga D, Walker E, Wilson M, Ali D. Malaria control in Malawi: current status and directions for the future. Acta Trop 2012;121:212-7.
-
(2012)
Acta Trop
, vol.121
, pp. 212-217
-
-
Mathanga, D.1
Walker, E.2
Wilson, M.3
Ali, D.4
-
5
-
-
33845875437
-
A genome-wide map of diversity in Plasmodium falciparum
-
Volkman SK, Sabeti PC, DeCaprio D, et al. A genome-wide map of diversity in Plasmodium falciparum. Nat Genet 2007;39:113-9.
-
(2007)
Nat Genet
, vol.39
, pp. 113-119
-
-
Volkman, S.K.1
Sabeti, P.C.2
DeCaprio, D.3
-
6
-
-
33745726540
-
A systematic map of genetic variation in Plasmodium falciparum
-
Kidgell C, Volkman SK, Daily J, et al. A systematic map of genetic variation in Plasmodium falciparum. PLoS Pathog 2006;2:e57.
-
(2006)
PLoS Pathog
, vol.2
, pp. e57
-
-
Kidgell, C.1
Volkman, S.K.2
Daily, J.3
-
7
-
-
77952370937
-
The selection landscape of malaria parasites
-
Mackinnon MJ, Marsh K. The selection landscape of malaria parasites. Science 2010;328:866-71.
-
(2010)
Science
, vol.328
, pp. 866-871
-
-
Mackinnon, M.J.1
Marsh, K.2
-
8
-
-
0024313579
-
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
-
Tajima F. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 1989;123:585-95.
-
(1989)
Genetics
, vol.123
, pp. 585-595
-
-
Tajima, F.1
-
9
-
-
84869224908
-
Entomological indices of malaria transmission in Chikhwawa district, Southern Malawi
-
Mzilahowa T, Hastings IM, Molyneux ME, McCall PJ. Entomological indices of malaria transmission in Chikhwawa district, Southern Malawi. Malar J; 2012;11:380.
-
(2012)
Malar J
, vol.11
, pp. 380
-
-
Mzilahowa, T.1
Hastings, I.M.2
Molyneux, M.E.3
McCall, P.J.4
-
10
-
-
83655183202
-
A new world malaria map: Plasmodium falciparum endemicity in 2010
-
Gething PW, Patil AP, Smith DL, et al. A new world malaria map: Plasmodium falciparum endemicity in 2010. Malar J 2011;10:378.
-
(2011)
Malar J
, vol.10
, pp. 378
-
-
Gething, P.W.1
Patil, A.P.2
Smith, D.L.3
-
12
-
-
84856802148
-
Using CF11 cellulose columns to inexpensively and effectively remove human DNA from Plasmodium falciparum-infected whole blood samples
-
Venkatesan M, Amaratunga C, Campino S, et al. Using CF11 cellulose columns to inexpensively and effectively remove human DNA from Plasmodium falciparum-infected whole blood samples. Malar J 2012;11:41.
-
(2012)
Malar J
, vol.11
, pp. 41
-
-
Venkatesan, M.1
Amaratunga, C.2
Campino, S.3
-
13
-
-
79960572208
-
An effective method to purify Plasmodium falciparum DNA directly from clinical blood samples for whole genome high-throughput sequencing
-
Auburn S, Campino S, Clark TG, et al. An effective method to purify Plasmodium falciparum DNA directly from clinical blood samples for whole genome high-throughput sequencing. PLoS One 2011;6:e22213.
-
(2011)
PLoS One
, vol.6
, pp. e22213
-
-
Auburn, S.1
Campino, S.2
Clark, T.G.3
-
14
-
-
55549089660
-
Accurate whole human genome sequencing using reversible terminator chemistry
-
Bentley DR, Balasubramanian S, Swerdlow HP, et al. Accurate whole human genome sequencing using reversible terminator chemistry. Nature 2008;456:53-9.
-
(2008)
Nature
, vol.456
, pp. 53-59
-
-
Bentley, D.R.1
Balasubramanian, S.2
Swerdlow, H.P.3
-
15
-
-
80051660606
-
Drug-resistant genotypes and multi-clonality in Plasmodium falciparum analysed by direct genome sequencing from peripheral blood of malaria patients
-
Robinson T, Campino SG, Auburn S, et al. Drug-resistant genotypes and multi-clonality in Plasmodium falciparum analysed by direct genome sequencing from peripheral blood of malaria patients. PLoS One 2011;6:e23204.
-
(2011)
PLoS One
, vol.6
, pp. e23204
-
-
Robinson, T.1
Campino, S.G.2
Auburn, S.3
-
16
-
-
84900791013
-
PlasmoView: A web-based resource to visualise global Plasmodium falciparum genomic variation
-
Preston MD, Assefa SA, Ocholla H, et al. PlasmoView: A web-based resource to visualise global Plasmodium falciparum genomic variation. J Infect Dis 2014;209:1808-15.
-
(2014)
J Infect Dis
, vol.209
, pp. 1808-1815
-
-
Preston, M.D.1
Assefa, S.A.2
Ocholla, H.3
-
17
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li H, Handsaker B, Wysoker A, et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics 2009;25:2078-9.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
-
18
-
-
84863982076
-
Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing
-
Manske M, Miotto O, Campino S, et al. Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing. Nature 2012;487:375-9.
-
(2012)
Nature
, vol.487
, pp. 375-379
-
-
Manske, M.1
Miotto, O.2
Campino, S.3
-
19
-
-
84895813625
-
DNA secondary structures are associated with recombination in major Plasmodium falciparum variable surface antigen gene families
-
Sander AF, Lavstsen T, Rask TS, et al. DNA secondary structures are associated with recombination in major Plasmodium falciparum variable surface antigen gene families. Nucleic Acids Res 2013;42:2270-81.
-
(2013)
Nucleic Acids Res
, vol.42
, pp. 2270-2281
-
-
Sander, A.F.1
Lavstsen, T.2
Rask, T.S.3
-
20
-
-
65649117685
-
DnaSP v5: A software for comprehensive analysis of DNA polymorphism data
-
Librado P, Rozas J. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 2009;25:1451-2.
-
(2009)
Bioinformatics
, vol.25
, pp. 1451-1452
-
-
Librado, P.1
Rozas, J.2
-
21
-
-
0030821992
-
Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection
-
Fu Y. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 1997;147:915-25.
-
(1997)
Genetics
, vol.147
, pp. 915-925
-
-
Fu, Y.1
-
23
-
-
84867826577
-
Genomic sequencing of Plasmodium falciparum malaria parasites from Senegal reveals the demographic history of the population
-
Chang H-H, Park DJ, Galinsky KJ, et al. Genomic sequencing of Plasmodium falciparum malaria parasites from Senegal reveals the demographic history of the population. Mol Biol Evol 2012;29:3427-39.
-
(2012)
Mol Biol Evol
, vol.29
, pp. 3427-3439
-
-
Chang, H.-H.1
Park, D.J.2
Galinsky, K.J.3
-
24
-
-
84899577039
-
EstMOI: Estimating multiplicity of infection using parasite deep sequencing data
-
Assefa SA, Preston MD, Campino S, Ocholla H, Sutherland CJ, Clark TG. estMOI: estimating multiplicity of infection using parasite deep sequencing data. Bioinformatics 2014;30:1292-4.
-
(2014)
Bioinformatics
, vol.30
, pp. 1292-1294
-
-
Assefa, S.A.1
Preston, M.D.2
Campino, S.3
Ocholla, H.4
Sutherland, C.J.5
Clark, T.G.6
-
25
-
-
79953261109
-
High recombination rates and hotspots in a Plasmodium falciparum genetic cross
-
Jiang H, Li N, Gopalan V, et al. High recombination rates and hotspots in a Plasmodium falciparum genetic cross. Genome Biol 2011;12:R33.
-
(2011)
Genome Biol
, vol.12
, pp. R33
-
-
Jiang, H.1
Li, N.2
Gopalan, V.3
-
26
-
-
35349012592
-
Genome-wide detection and characterization of positive selection in human populations
-
Sabeti PC, Varilly P, Fry B, et al. Genome-wide detection and characterization of positive selection in human populations. Nature 2007;449:913-8.
-
(2007)
Nature
, vol.449
, pp. 913-918
-
-
Sabeti, P.C.1
Varilly, P.2
Fry, B.3
-
27
-
-
67349176068
-
Genetics in geographically structured populations: Defining, estimating and interpreting F (ST)
-
Holsinger KE, Weir BS. Genetics in geographically structured populations: defining, estimating and interpreting F (ST). Nat Rev Genet 2009;10:639-50.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 639-650
-
-
Holsinger, K.E.1
Weir, B.S.2
-
28
-
-
33646226097
-
Linkage disequilibrium in finite populations
-
Hill WG, Robertson A. Linkage disequilibrium in finite populations. Theor Appl Genet 1968;38:226-31.
-
(1968)
Theor Appl Genet
, vol.38
, pp. 226-231
-
-
Hill, W.G.1
Robertson, A.2
-
29
-
-
84859905492
-
Harnessing genomics and genome biology to understand malaria biology
-
Volkman SK, Neafsey DE, Schaffner SF, Park DJ, Wirth DF. Harnessing genomics and genome biology to understand malaria biology. Nat Rev Genet; 2012;13:315-28.
-
(2012)
Nat Rev Genet
, vol.13
, pp. 315-328
-
-
Volkman, S.K.1
Neafsey, D.E.2
Schaffner, S.F.3
Park, D.J.4
Wirth, D.F.5
-
30
-
-
84866943868
-
Use of massively parallel pyrosequencing to evaluate the diversity of and selection on Plasmodium falciparum csp T-cell epitopes in Lilongwe, Malawi
-
Bailey JA, Mvalo T, Aragam N, et al. Use of massively parallel pyrosequencing to evaluate the diversity of and selection on Plasmodium falciparum csp T-cell epitopes in Lilongwe, Malawi. J Infect Dis 2012;206:580-7.
-
(2012)
J Infect Dis
, vol.206
, pp. 580-587
-
-
Bailey, J.A.1
Mvalo, T.2
Aragam, N.3
-
31
-
-
84888882898
-
Genome-wide screen identifies new candidate genes associated with artemisinin susceptibility in Plasmodium falciparum in Kenya
-
Borrmann S, Straimer J, Mwai L, et al. Genome-wide screen identifies new candidate genes associated with artemisinin susceptibility in Plasmodium falciparum in Kenya. Sci Rep 2013;3:3318.
-
(2013)
Sci Rep
, vol.3
, pp. 3318
-
-
Borrmann, S.1
Straimer, J.2
Mwai, L.3
-
32
-
-
33845914565
-
Genome-wide variation and identification of vaccine targets in the Plasmodium falciparum genome
-
Mu J, Awadalla P, Duan J, et al. Genome-wide variation and identification of vaccine targets in the Plasmodium falciparum genome. Nat Genet 2007;39:126-30.
-
(2007)
Nat Genet
, vol.39
, pp. 126-130
-
-
Mu, J.1
Awadalla, P.2
Duan, J.3
-
33
-
-
84867761314
-
SNP genotyping identifies new signatures of selection in a deep sample of West African Plasmodium falciparum malaria parasites
-
Amambua-Ngwa A, Park DJ, Volkman SK, et al. SNP genotyping identifies new signatures of selection in a deep sample of West African Plasmodium falciparum malaria parasites. Mol Biol Evol 2012;29:3249-53.
-
(2012)
Mol Biol Evol
, vol.29
, pp. 3249-3253
-
-
Amambua-Ngwa, A.1
Park, D.J.2
Volkman, S.K.3
-
34
-
-
79957553908
-
Malaria parasite clag genes determine nutrient uptake channel activity on infected red blood cells
-
Nguitragool W, Bokhari A, Pillai A. Malaria parasite clag genes determine nutrient uptake channel activity on infected red blood cells. Cell 2011;145:665-77.
-
(2011)
Cell
, vol.145
, pp. 665-677
-
-
Nguitragool, W.1
Bokhari, A.2
Pillai, A.3
-
35
-
-
79955632728
-
Identification and functional validation of the novel antimalarial resistance locus PF10-0355 in Plasmodium falciparum
-
Van Tyne D, Park DJ, Schaffner SF, et al. Identification and functional validation of the novel antimalarial resistance locus PF10-0355 in Plasmodium falciparum. PLoS Genet 2011;7:e1001383.
-
(2011)
PLoS Genet
, vol.7
, pp. e1001383
-
-
Van Tyne, D.1
Park, D.J.2
Schaffner, S.F.3
-
36
-
-
84892372929
-
A molecular marker of artemisinin-resistant Plasmodium falciparum malaria
-
Ariey F, Witkowski B, Amaratunga C, et al. A molecular marker of artemisinin-resistant Plasmodium falciparum malaria. Nature 2014;505:50-5.
-
(2014)
Nature
, vol.505
, pp. 50-55
-
-
Ariey, F.1
Witkowski, B.2
Amaratunga, C.3
-
37
-
-
84870706630
-
Population genomic scan for candidate signatures of balancing selection to guide antigen characterization in malaria parasites
-
Amambua-Ngwa A, Tetteh K K A, Manske M, et al. Population genomic scan for candidate signatures of balancing selection to guide antigen characterization in malaria parasites. PLoS Genet 2012;8:e1002992.
-
(2012)
PLoS Genet
, vol.8
, pp. e1002992
-
-
Amambua-Ngwa, A.1
Tetteh, K.K.A.2
Manske, M.3
-
38
-
-
77957242593
-
Allele frequency-based and polymorphism-versus-divergence indices of balancing selection in a new filtered set of polymorphic genes in Plasmodium falciparum
-
Ochola LI, Tetteh K K A, Stewart LB, Riitho V, Marsh K, Conway DJ. Allele frequency-based and polymorphism-versus-divergence indices of balancing selection in a new filtered set of polymorphic genes in Plasmodium falciparum. Mol Biol 2010;27:2344-51.
-
(2010)
Mol Biol
, vol.27
, pp. 2344-2351
-
-
Ochola, L.I.1
Tetteh, K.K.A.2
Stewart, L.B.3
Riitho, V.4
Marsh, K.5
Conway, D.J.6
-
39
-
-
33750730913
-
Return of chloroquine antimalarial efficacy in Malawi
-
Laufer M, Thesing P, Eddington N, et al. Return of Chloroquine Antimalarial Efficacy in Malawi. N Engl J Med 2006;355:1959-66.
-
(2006)
N Engl J Med
, vol.355
, pp. 1959-1966
-
-
Laufer, M.1
Thesing, P.2
Eddington, N.3
-
40
-
-
55449133690
-
Adaptive copy number evolution in malaria parasites
-
Nair S, Miller B, Barends M, et al. Adaptive copy number evolution in malaria parasites. PLoS Genet 2008;4:e1000243.
-
(2008)
PLoS Genet
, vol.4
, pp. e1000243
-
-
Nair, S.1
Miller, B.2
Barends, M.3
-
41
-
-
84864576516
-
Shedding of TRAP by a rhomboid protease from the malaria sporozoite surface is essential for gliding motility and sporozoite infectivity
-
Ejigiri I, Ragheb D R T, Pino P, et al. Shedding of TRAP by a rhomboid protease from the malaria sporozoite surface is essential for gliding motility and sporozoite infectivity. PLoS Pathog 2012;8:e1002725.
-
(2012)
PLoS Pathog
, vol.8
, pp. e1002725
-
-
Ejigiri, I.1
Ragheb, D.R.T.2
Pino, P.3
-
42
-
-
0033765026
-
Origin of Plasmodium falciparum malaria is traced by mitochondrial DNA
-
Conway DJ, Fanello C, Lloyd JM, et al. Origin of Plasmodium falciparum malaria is traced by mitochondrial DNA. Mol Biochem Parasitol 2000;111:163-71.
-
(2000)
Mol Biochem Parasitol
, vol.111
, pp. 163-171
-
-
Conway, D.J.1
Fanello, C.2
Lloyd, J.M.3
-
43
-
-
70349536103
-
Mitochondrial evolution and functions in malaria parasites
-
Vaidya AB, Mather MW. Mitochondrial evolution and functions in malaria parasites. Annu Rev Microbiol 2009;63:249-67.
-
(2009)
Annu Rev Microbiol
, vol.63
, pp. 249-267
-
-
Vaidya, A.B.1
Mather, M.W.2
-
44
-
-
34250178810
-
Molecular surveillance for drugresistant Plasmodium falciparum malaria in Malawi
-
Nkhoma S, Molyneux M, Ward S. Molecular surveillance for drugresistant Plasmodium falciparum malaria in Malawi. Acta Trop 2007;102:138-42.
-
(2007)
Acta Trop
, vol.102
, pp. 138-142
-
-
Nkhoma, S.1
Molyneux, M.2
Ward, S.3
-
45
-
-
67650685545
-
Chloroquine resistance before and after its withdrawal in Kenya
-
Mwai L, Ochong E, Abdirahman A, et al. Chloroquine resistance before and after its withdrawal in Kenya. Malar J 2009;8:106.
-
(2009)
Malar J
, vol.8
, pp. 106
-
-
Mwai, L.1
Ochong, E.2
Abdirahman, A.3
-
46
-
-
84906936219
-
Return of widespread chloroquine-sensitive Plasmodium falciparum to Malawi
-
Frosch A E P, Laufer MK, Mathanga DP, et al. Return of widespread chloroquine-sensitive Plasmodium falciparum to Malawi. J Infect Dis 2014;210:1110-4.
-
(2014)
J Infect Dis
, vol.210
, pp. 1110-1114
-
-
Frosch, A.E.P.1
Laufer, M.K.2
Mathanga, D.P.3
-
47
-
-
80053897206
-
Role of Plasmodium falciparum chloroquine resistance transporter and multidrug resistance 1 genes on in vitro chloroquine resistance in isolates of Plasmodium falciparum from Thailand
-
Setthaudom C, Tan-ariya P, Sitthichot N, et al. Role of Plasmodium falciparum chloroquine resistance transporter and multidrug resistance 1 genes on in vitro chloroquine resistance in isolates of Plasmodium falciparum from Thailand. Am J Trop Med Hyg 2011;85:606-11.
-
(2011)
Am J Trop Med Hyg
, vol.85
, pp. 606-611
-
-
Setthaudom, C.1
Tan-Ariya, P.2
Sitthichot, N.3
-
48
-
-
84901474677
-
Genome-wide analysis of selection on the malaria parasite Plasmodium falciparum in West African populations of differing infection endemicity
-
Mobegi VA, Duffy CW, Amambua-Ngwa A, et al. Genome-wide analysis of selection on the malaria parasite Plasmodium falciparum in West African populations of differing infection endemicity. Mol Biol Evol 2014;31:1490-9.
-
(2014)
Mol Biol Evol
, vol.31
, pp. 1490-1499
-
-
Mobegi, V.A.1
Duffy, C.W.2
Amambua-Ngwa, A.3
|