-
1
-
-
0035503921
-
The Arabidopsis thaliana genome contains at least 29 active genes encoding SET domain proteins that can be assigned to four evolutionarily conserved classes
-
L.O. Baumbusch, T. Thorstensen, V. Krauss, A. Fischer, K. Naumann, R. Assalkhou, I. Schulz, G. Reuter, R.B. Aalen The Arabidopsis thaliana genome contains at least 29 active genes encoding SET domain proteins that can be assigned to four evolutionarily conserved classes Nucleic Acids Res 29 2001 4319 4333
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 4319-4333
-
-
Baumbusch, L.O.1
Thorstensen, T.2
Krauss, V.3
Fischer, A.4
Naumann, K.5
Assalkhou, R.6
Schulz, I.7
Reuter, G.8
Aalen, R.B.9
-
2
-
-
67649958263
-
Heterochromatic siRNAs and DDM1 independently silence aberrant 5S rDNA transcripts in Arabidopsis
-
T. Blevins, O. Pontes, C.S. Pikaard, F. Meins Jr Heterochromatic siRNAs and DDM1 independently silence aberrant 5S rDNA transcripts in Arabidopsis PloS One 4 2009 e5932
-
(2009)
PloS One
, vol.4
, pp. e5932
-
-
Blevins, T.1
Pontes, O.2
Pikaard, C.S.3
Meins, Jr.F.4
-
3
-
-
84883258403
-
The stochastic silencing phenotype of Arabidopsis morc6 mutants reveals a role in efficient RNA-directed DNA methylation
-
T.R. Brabbs, Z. He, K. Hogg, A. Kamenski, Y. Li, K.H. Paszkiewicz, K.A. Moore, P. O'Toole, I.A. Graham, L. Jones The stochastic silencing phenotype of Arabidopsis morc6 mutants reveals a role in efficient RNA-directed DNA methylation Plant J 75 2013 836 846
-
(2013)
Plant J
, vol.75
, pp. 836-846
-
-
Brabbs, T.R.1
He, Z.2
Hogg, K.3
Kamenski, A.4
Li, Y.5
Paszkiewicz, K.H.6
Moore, K.A.7
O'Toole, P.8
Graham, I.A.9
Jones, L.10
-
4
-
-
0037046810
-
Role of the Arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing
-
X. Cao, S.E. Jacobsen Role of the Arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing Curr. Biol 12 2002 1138 1144
-
(2002)
Curr. Biol
, vol.12
, pp. 1138-1144
-
-
Cao, X.1
Jacobsen, S.E.2
-
5
-
-
84872533627
-
RNA interference in the nucleus: Roles for small RNAs in transcription, epigenetics and beyond
-
S.E. Castel, R.A. Martienssen RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond Nat. Rev. Genet 14 2013 100 112
-
(2013)
Nat. Rev. Genet
, vol.14
, pp. 100-112
-
-
Castel, S.E.1
Martienssen, R.A.2
-
6
-
-
40749109894
-
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
-
S.J. Cokus, S. Feng, X. Zhang, Z. Chen, B. Merriman, C.D. Haudenschild, S. Pradhan, S.F. Nelson, M. Pellegrini, S.E. Jacobsen Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning Nature 452 2008 215 219
-
(2008)
Nature
, vol.452
, pp. 215-219
-
-
Cokus, S.J.1
Feng, S.2
Zhang, X.3
Chen, Z.4
Merriman, B.5
Haudenschild, C.D.6
Pradhan, S.7
Nelson, S.F.8
Pellegrini, M.9
Jacobsen, S.E.10
-
7
-
-
77953079177
-
Mechanisms of HDA6-mediated rRNA gene silencing: Suppression of intergenic Pol II transcription and differential effects on maintenance versus siRNA-directed cytosine methylation
-
K.W. Earley, F. Pontvianne, A.T. Wierzbicki, T. Blevins, S. Tucker, P. Costa-Nunes, O. Pontes, C.S. Pikaard Mechanisms of HDA6-mediated rRNA gene silencing: suppression of intergenic Pol II transcription and differential effects on maintenance versus siRNA-directed cytosine methylation Genes Dev 24 2010 1119 1132
-
(2010)
Genes Dev
, vol.24
, pp. 1119-1132
-
-
Earley, K.W.1
Pontvianne, F.2
Wierzbicki, A.T.3
Blevins, T.4
Tucker, S.5
Costa-Nunes, P.6
Pontes, O.7
Pikaard, C.S.8
-
8
-
-
33745454548
-
Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase
-
M.L. Ebbs, J. Bender Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase Plant Cell 18 2006 1166 1176
-
(2006)
Plant Cell
, vol.18
, pp. 1166-1176
-
-
Ebbs, M.L.1
Bender, J.2
-
9
-
-
35348970326
-
Reiterated WG/GW motifs form functionally and evolutionarily conserved ARGONAUTE-binding platforms in RNAi-related components
-
M. El-Shami, D. Pontier, S. Lahmy, L. Braun, C. Picart, D. Vega, M.A. Hakimi, S.E. Jacobsen, R. Cooke, T. Lagrange Reiterated WG/GW motifs form functionally and evolutionarily conserved ARGONAUTE-binding platforms in RNAi-related components Genes Dev 21 2007 2539 2544
-
(2007)
Genes Dev
, vol.21
, pp. 2539-2544
-
-
El-Shami, M.1
Pontier, D.2
Lahmy, S.3
Braun, L.4
Picart, C.5
Vega, D.6
Hakimi, M.A.7
Jacobsen, S.E.8
Cooke, R.9
Lagrange, T.10
-
10
-
-
78049414227
-
Epigenetic reprogramming in plant and animal development
-
S. Feng, S.E. Jacobsen, W. Reik Epigenetic reprogramming in plant and animal development Science 330 2010 622 627
-
(2010)
Science
, vol.330
, pp. 622-627
-
-
Feng, S.1
Jacobsen, S.E.2
Reik, W.3
-
11
-
-
77952090735
-
An RNA polymerase II- and AGO4-associated protein acts in RNA-directed DNA methylation
-
Z. Gao, H.L. Liu, L. Daxinger, O. Pontes, X. He, W. Qian, H. Lin, M. Xie, Z.J. Lorkovic, S. Zhang et al. An RNA polymerase II- and AGO4-associated protein acts in RNA-directed DNA methylation Nature 465 2010 106 109
-
(2010)
Nature
, vol.465
, pp. 106-109
-
-
Gao, Z.1
Liu, H.L.2
Daxinger, L.3
Pontes, O.4
He, X.5
Qian, W.6
Lin, H.7
Xie, M.8
Lorkovic, Z.J.9
Zhang, S.10
-
12
-
-
79960716754
-
Multisubunit RNA polymerases IV and V: Purveyors of non-coding RNA for plant gene silencing
-
J.R. Haag, C.S. Pikaard Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing Nat. Rev. Mol. Cell Biol 12 2011 483 492
-
(2011)
Nat. Rev. Mol. Cell Biol
, vol.12
, pp. 483-492
-
-
Haag, J.R.1
Pikaard, C.S.2
-
13
-
-
84870942752
-
In vitro transcription activities of Pol IV, Pol V, and RDR2 reveal coupling of Pol IV and RDR2 for dsRNA synthesis in plant RNA silencing
-
J.R. Haag, T.S. Ream, M. Marasco, C.D. Nicora, A.D. Norbeck, L. Pasa-Tolic, C.S. Pikaard In vitro transcription activities of Pol IV, Pol V, and RDR2 reveal coupling of Pol IV and RDR2 for dsRNA synthesis in plant RNA silencing Mol. Cell 48 2012 811 818
-
(2012)
Mol. Cell
, vol.48
, pp. 811-818
-
-
Haag, J.R.1
Ream, T.S.2
Marasco, M.3
Nicora, C.D.4
Norbeck, A.D.5
Pasa-Tolic, L.6
Pikaard, C.S.7
-
14
-
-
79952535972
-
Regulation and function of DNA methylation in plants and animals
-
X.J. He, T. Chen, J.K. Zhu Regulation and function of DNA methylation in plants and animals Cell Res 21 2011 442 465
-
(2011)
Cell Res
, vol.21
, pp. 442-465
-
-
He, X.J.1
Chen, T.2
Zhu, J.K.3
-
15
-
-
59949097829
-
NRPD4, a protein related to the RPB4 subunit of RNA polymerase II, is a component of RNA polymerases IV and v and is required for RNA-directed DNA methylation
-
X.J. He, Y.F. Hsu, O. Pontes, J. Zhu, J. Lu, R.A. Bressan, C. Pikaard, C.S. Wang, J.K. Zhu NRPD4, a protein related to the RPB4 subunit of RNA polymerase II, is a component of RNA polymerases IV and V and is required for RNA-directed DNA methylation Genes Dev 23 2009 318 330
-
(2009)
Genes Dev
, vol.23
, pp. 318-330
-
-
He, X.J.1
Hsu, Y.F.2
Pontes, O.3
Zhu, J.4
Lu, J.5
Bressan, R.A.6
Pikaard, C.7
Wang, C.S.8
Zhu, J.K.9
-
16
-
-
65249093731
-
An effector of RNA-directed DNA methylation in Arabidopsis is an ARGONAUTE 4- and RNA-binding protein
-
X.J. He, Y.F. Hsu, S. Zhu, A.T. Wierzbicki, O. Pontes, C.S. Pikaard, H.L. Liu, C.S. Wang, H. Jin, J.K. Zhu An effector of RNA-directed DNA methylation in Arabidopsis is an ARGONAUTE 4- and RNA-binding protein Cell 137 2009 498 508
-
(2009)
Cell
, vol.137
, pp. 498-508
-
-
He, X.J.1
Hsu, Y.F.2
Zhu, S.3
Wierzbicki, A.T.4
Pontes, O.5
Pikaard, C.S.6
Liu, H.L.7
Wang, C.S.8
Jin, H.9
Zhu, J.K.10
-
17
-
-
78449231939
-
The de novo cytosine methyltransferase DRM2 requires intact UBA domains and a catalytically mutated paralog DRM3 during RNA-directed DNA methylation in Arabidopsis thaliana
-
I.R. Henderson, A. Deleris, W. Wong, X. Zhong, H.G. Chin, G.A. Horwitz, K.A. Kelly, S. Pradhan, S.E. Jacobsen The de novo cytosine methyltransferase DRM2 requires intact UBA domains and a catalytically mutated paralog DRM3 during RNA-directed DNA methylation in Arabidopsis thaliana PLoS Genetics 6 2010 e1001182
-
(2010)
PLoS Genetics
, vol.6
, pp. e1001182
-
-
Henderson, I.R.1
Deleris, A.2
Wong, W.3
Zhong, X.4
Chin, H.G.5
Horwitz, G.A.6
Kelly, K.A.7
Pradhan, S.8
Jacobsen, S.E.9
-
18
-
-
33745279055
-
Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning
-
I.R. Henderson, X. Zhang, C. Lu, L. Johnson, B.C. Meyers, P.J. Green, S.E. Jacobsen Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning Nat. Genet 38 2006 721 725
-
(2006)
Nat. Genet
, vol.38
, pp. 721-725
-
-
Henderson, I.R.1
Zhang, X.2
Lu, C.3
Johnson, L.4
Meyers, B.C.5
Green, P.J.6
Jacobsen, S.E.7
-
20
-
-
58149271019
-
An atypical RNA polymerase involved in RNA silencing shares small subunits with RNA polymerase II
-
L. Huang, A.M. Jones, I. Searle, K. Patel, H. Vogler, N.C. Hubner, D.C. Baulcombe An atypical RNA polymerase involved in RNA silencing shares small subunits with RNA polymerase II Nat. Struct. Mol. Biol 16 2009 91 93
-
(2009)
Nat. Struct. Mol. Biol
, vol.16
, pp. 91-93
-
-
Huang, L.1
Jones, A.M.2
Searle, I.3
Patel, K.4
Vogler, H.5
Hubner, N.C.6
Baulcombe, D.C.7
-
21
-
-
0037041422
-
Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase
-
J.P. Jackson, A.M. Lindroth, X. Cao, S.E. Jacobsen Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase Nature 416 2002 556 560
-
(2002)
Nature
, vol.416
, pp. 556-560
-
-
Jackson, J.P.1
Lindroth, A.M.2
Cao, X.3
Jacobsen, S.E.4
-
22
-
-
33846931283
-
The SRA methyl-cytosine-binding domain links DNA and histone methylation
-
L.M. Johnson, M. Bostick, X. Zhang, E. Kraft, I. Henderson, J. Callis, S.E. Jacobsen The SRA methyl-cytosine-binding domain links DNA and histone methylation Curr. Biol 17 2007 379 384
-
(2007)
Curr. Biol
, vol.17
, pp. 379-384
-
-
Johnson, L.M.1
Bostick, M.2
Zhang, X.3
Kraft, E.4
Henderson, I.5
Callis, J.6
Jacobsen, S.E.7
-
23
-
-
84895897598
-
SRA- and SET-domain-containing proteins link RNA polymerase v occupancy to DNA methylation
-
L.M. Johnson, J. Du, C.J. Hale, S. Bischof, S. Feng, R.K. Chodavarapu, X. Zhong, G. Marson, M. Pellegrini, D.J. Segal et al. SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation Nature 507 2014 124 128
-
(2014)
Nature
, vol.507
, pp. 124-128
-
-
Johnson, L.M.1
Du, J.2
Hale, C.J.3
Bischof, S.4
Feng, S.5
Chodavarapu, R.K.6
Zhong, X.7
Marson, G.8
Pellegrini, M.9
Segal, D.J.10
-
24
-
-
57149115354
-
SRA-domain proteins required for DRM2-mediated de novo DNA methylation
-
L.M. Johnson, J.A. Law, A. Khattar, I.R. Henderson, S.E. Jacobsen SRA-domain proteins required for DRM2-mediated de novo DNA methylation PLoS Genetics 4 2008 e1000280
-
(2008)
PLoS Genetics
, vol.4
, pp. e1000280
-
-
Johnson, L.M.1
Law, J.A.2
Khattar, A.3
Henderson, I.R.4
Jacobsen, S.E.5
-
25
-
-
22844447304
-
Atypical RNA polymerase subunits required for RNA-directed DNA methylation
-
T. Kanno, B. Huettel, M.F. Mette, W. Aufsatz, E. Jaligot, L. Daxinger, D.P. Kreil, M. Matzke, A.J. Matzke Atypical RNA polymerase subunits required for RNA-directed DNA methylation Nat. Genet 37 2005 761 765
-
(2005)
Nat. Genet
, vol.37
, pp. 761-765
-
-
Kanno, T.1
Huettel, B.2
Mette, M.F.3
Aufsatz, W.4
Jaligot, E.5
Daxinger, L.6
Kreil, D.P.7
Matzke, M.8
Matzke, A.J.9
-
26
-
-
84864354817
-
Developmentally non-redundant SET domain proteins SUVH2 and SUVH9 are required for transcriptional gene silencing in Arabidopsis thaliana
-
M. Kuhlmann, M.F. Mette Developmentally non-redundant SET domain proteins SUVH2 and SUVH9 are required for transcriptional gene silencing in Arabidopsis thaliana Plant Mol. Biol 79 2012 623 633
-
(2012)
Plant Mol. Biol
, vol.79
, pp. 623-633
-
-
Kuhlmann, M.1
Mette, M.F.2
-
27
-
-
58849120615
-
PolV(PolIVb) function in RNA-directed DNA methylation requires the conserved active site and an additional plant-specific subunit
-
S. Lahmy, D. Pontier, E. Cavel, D. Vega, M. El-Shami, T. Kanno, T. Lagrange PolV(PolIVb) function in RNA-directed DNA methylation requires the conserved active site and an additional plant-specific subunit Proc. Natl Acad. Sci. U S A 106 2009 941 946
-
(2009)
Proc. Natl Acad. Sci. U S A
, vol.106
, pp. 941-946
-
-
Lahmy, S.1
Pontier, D.2
Cavel, E.3
Vega, D.4
El-Shami, M.5
Kanno, T.6
Lagrange, T.7
-
28
-
-
77249170184
-
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
-
J.A. Law, S.E. Jacobsen Establishing, maintaining and modifying DNA methylation patterns in plants and animals Nat. Rev. Genet 11 2010 204 220
-
(2010)
Nat. Rev. Genet
, vol.11
, pp. 204-220
-
-
Law, J.A.1
Jacobsen, S.E.2
-
29
-
-
77953129746
-
A protein complex required for polymerase v transcripts and RNA-directed DNA methylation in Arabidopsis
-
J.A. Law, I. Ausin, L.M. Johnson, A.A. Vashisht, J.K. Zhu, J.A. Wohlschlegel, S.E. Jacobsen A protein complex required for polymerase V transcripts and RNA-directed DNA methylation in Arabidopsis Curr. Biol 20 2010 951 956
-
(2010)
Curr. Biol
, vol.20
, pp. 951-956
-
-
Law, J.A.1
Ausin, I.2
Johnson, L.M.3
Vashisht, A.A.4
Zhu, J.K.5
Wohlschlegel, J.A.6
Jacobsen, S.E.7
-
30
-
-
84879417659
-
Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1
-
J.A. Law, J. Du, C.J. Hale, S. Feng, K. Krajewski, A.M. Palanca, B.D. Strahl, D.J. Patel, S.E. Jacobsen Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1 Nature 498 2013 385 389
-
(2013)
Nature
, vol.498
, pp. 385-389
-
-
Law, J.A.1
Du, J.2
Hale, C.J.3
Feng, S.4
Krajewski, K.5
Palanca, A.M.6
Strahl, B.D.7
Patel, D.J.8
Jacobsen, S.E.9
-
31
-
-
79960960568
-
SHH1, a homeodomain protein required for DNA methylation, as well as RDR2, RDM4, and chromatin remodeling factors, associate with RNA polymerase IV
-
J.A. Law, A.A. Vashisht, J.A. Wohlschlegel, S.E. Jacobsen SHH1, a homeodomain protein required for DNA methylation, as well as RDR2, RDM4, and chromatin remodeling factors, associate with RNA polymerase IV PLoS Genetics 7 2011 e1002195
-
(2011)
PLoS Genetics
, vol.7
, pp. e1002195
-
-
Law, J.A.1
Vashisht, A.A.2
Wohlschlegel, J.A.3
Jacobsen, S.E.4
-
32
-
-
84863792071
-
RNA polymerase V-dependent small RNAs in Arabidopsis originate from small, intergenic loci including most SINE repeats
-
T.F. Lee, S.G. Gurazada, J. Zhai, S. Li, S.A. Simon, M.A. Matzke, X. Chen, B.C. Meyers RNA polymerase V-dependent small RNAs in Arabidopsis originate from small, intergenic loci including most SINE repeats Epigenetics: Official Journal of the DNA Methylation Society 7 2012 781 795
-
(2012)
Epigenetics: Official Journal of the DNA Methylation Society
, vol.7
, pp. 781-795
-
-
Lee, T.F.1
Gurazada, S.G.2
Zhai, J.3
Li, S.4
Simon, S.A.5
Matzke, M.A.6
Chen, X.7
Meyers, B.C.8
-
33
-
-
33745699398
-
An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana
-
C.F. Li, O. Pontes, M. El-Shami, I.R. Henderson, Y.V. Bernatavichute, S.W. Chan, T. Lagrange, C.S. Pikaard, S.E. Jacobsen An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana Cell 126 2006 93 106
-
(2006)
Cell
, vol.126
, pp. 93-106
-
-
Li, C.F.1
Pontes, O.2
El-Shami, M.3
Henderson, I.R.4
Bernatavichute, Y.V.5
Chan, S.W.6
Lagrange, T.7
Pikaard, C.S.8
Jacobsen, S.E.9
-
34
-
-
4243085624
-
Distinct mechanisms determine transposon inheritance and methylation via small interfering RNA and histone modification
-
Z. Lippman, B. May, C. Yordan, T. Singer, R. Martienssen Distinct mechanisms determine transposon inheritance and methylation via small interfering RNA and histone modification PLoS Biology 1 2003 E67
-
(2003)
PLoS Biology
, vol.1
, pp. E67
-
-
Lippman, Z.1
May, B.2
Yordan, C.3
Singer, T.4
Martienssen, R.5
-
35
-
-
42749087226
-
Highly integrated single-base resolution maps of the epigenome in Arabidopsis
-
R. Lister, R.C. O'Malley, J. Tonti-Filippini, B.D. Gregory, C.C. Berry, A.H. Millar, J.R. Ecker Highly integrated single-base resolution maps of the epigenome in Arabidopsis Cell 133 2008 523 536
-
(2008)
Cell
, vol.133
, pp. 523-536
-
-
Lister, R.1
O'Malley, R.C.2
Tonti-Filippini, J.3
Gregory, B.D.4
Berry, C.C.5
Millar, A.H.6
Ecker, J.R.7
-
36
-
-
82655168764
-
An atypical component of RNA-directed DNA methylation machinery has both DNA methylation-dependent and -independent roles in locus-specific transcriptional gene silencing
-
J. Liu, G. Bai, C. Zhang, W. Chen, J. Zhou, S. Zhang, Q. Chen, X. Deng, X.J. He, J.K. Zhu An atypical component of RNA-directed DNA methylation machinery has both DNA methylation-dependent and -independent roles in locus-specific transcriptional gene silencing Cell Res 21 2011 1691 1700
-
(2011)
Cell Res
, vol.21
, pp. 1691-1700
-
-
Liu, J.1
Bai, G.2
Zhang, C.3
Chen, W.4
Zhou, J.5
Zhang, S.6
Chen, Q.7
Deng, X.8
He, X.J.9
Zhu, J.K.10
-
37
-
-
84893801023
-
The SET domain proteins SUVH2 and SUVH9 are required for Pol v occupancy at RNA-directed DNA methylation loci
-
Z.W. Liu, C.R. Shao, C.J. Zhang, J.X. Zhou, S.W. Zhang, L. Li, S. Chen, H.W. Huang, T. Cai, X.J. He The SET domain proteins SUVH2 and SUVH9 are required for Pol V occupancy at RNA-directed DNA methylation loci PLoS Genetics 10 2014 e1003948
-
(2014)
PLoS Genetics
, vol.10
, pp. e1003948
-
-
Liu, Z.W.1
Shao, C.R.2
Zhang, C.J.3
Zhou, J.X.4
Zhang, S.W.5
Li, L.6
Chen, S.7
Huang, H.W.8
Cai, T.9
He, X.J.10
-
38
-
-
84861527038
-
Involvement of a GHKL ATPase in RNA-directed DNA methylation in Arabidopsis thaliana
-
Z.J. Lorkovic, U. Naumann, A.J. Matzke, M. Matzke Involvement of a GHKL ATPase in RNA-directed DNA methylation in Arabidopsis thaliana Curr. Biol 22 2012 933 938
-
(2012)
Curr. Biol
, vol.22
, pp. 933-938
-
-
Lorkovic, Z.J.1
Naumann, U.2
Matzke, A.J.3
Matzke, M.4
-
39
-
-
34548299554
-
Transgenerational stability of the Arabidopsis epigenome is coordinated by CG methylation
-
O. Mathieu, J. Reinders, M. Caikovski, C. Smathajitt, J. Paszkowski Transgenerational stability of the Arabidopsis epigenome is coordinated by CG methylation Cell 130 2007 851 862
-
(2007)
Cell
, vol.130
, pp. 851-862
-
-
Mathieu, O.1
Reinders, J.2
Caikovski, M.3
Smathajitt, C.4
Paszkowski, J.5
-
40
-
-
84901041535
-
RNA-directed DNA methylation: An epigenetic pathway of increasing complexity
-
M.A. Matzke, R.A. Mosher RNA-directed DNA methylation: an epigenetic pathway of increasing complexity Nat. Rev. Genet 15 2014 394 408
-
(2014)
Nat. Rev. Genet
, vol.15
, pp. 394-408
-
-
Matzke, M.A.1
Mosher, R.A.2
-
41
-
-
58749097426
-
Small RNAs in transcriptional gene silencing and genome defence
-
D. Moazed Small RNAs in transcriptional gene silencing and genome defence Nature 457 2009 413 420
-
(2009)
Nature
, vol.457
, pp. 413-420
-
-
Moazed, D.1
-
42
-
-
84862270547
-
MORC family ATPases required for heterochromatin condensation and gene silencing
-
G. Moissiard, S.J. Cokus, J. Cary, S. Feng, A.C. Billi, H. Stroud, D. Husmann, Y. Zhan, B.R. Lajoie, R.P. McCord et al. MORC family ATPases required for heterochromatin condensation and gene silencing Science 336 2012 1448 1451
-
(2012)
Science
, vol.336
, pp. 1448-1451
-
-
Moissiard, G.1
Cokus, S.J.2
Cary, J.3
Feng, S.4
Billi, A.C.5
Stroud, H.6
Husmann, D.7
Zhan, Y.8
Lajoie, B.R.9
McCord, R.P.10
-
43
-
-
42549096814
-
PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis
-
R.A. Mosher, F. Schwach, D. Studholme, D.C. Baulcombe PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis Proc. Natl Acad. Sci. U S A 105 2008 3145 3150
-
(2008)
Proc. Natl Acad. Sci. U S A
, vol.105
, pp. 3145-3150
-
-
Mosher, R.A.1
Schwach, F.2
Studholme, D.3
Baulcombe, D.C.4
-
44
-
-
14844302397
-
Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation
-
Y. Onodera, J.R. Haag, T. Ream, P. Costa Nunes, O. Pontes, C.S. Pikaard Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation Cell 120 2005 613 622
-
(2005)
Cell
, vol.120
, pp. 613-622
-
-
Onodera, Y.1
Haag, J.R.2
Ream, T.3
Costa Nunes, P.4
Pontes, O.5
Pikaard, C.S.6
-
45
-
-
84881520399
-
A transcription fork model for Pol IV and Pol V-dependent RNA-directed DNA methylation. Cold Spring Harb. Symp
-
C.S. Pikaard, J.R. Haag, O.M. Pontes, T. Blevins, R. Cocklin A transcription fork model for Pol IV and Pol V-dependent RNA-directed DNA methylation. Cold Spring Harb. Symp Quant. Biol 77 2012 205 212
-
(2012)
Quant. Biol
, vol.77
, pp. 205-212
-
-
Pikaard, C.S.1
Haag, J.R.2
Pontes, O.M.3
Blevins, T.4
Cocklin, R.5
-
46
-
-
33745690105
-
The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center
-
O. Pontes, C.F. Li, P. Costa Nunes, J. Haag, T. Ream, A. Vitins, S.E. Jacobsen, C.S. Pikaard The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center Cell 126 2006 79 92
-
(2006)
Cell
, vol.126
, pp. 79-92
-
-
Pontes, O.1
Li, C.F.2
Costa Nunes, P.3
Haag, J.4
Ream, T.5
Vitins, A.6
Jacobsen, S.E.7
Pikaard, C.S.8
-
47
-
-
24344433177
-
Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis
-
D. Pontier, G. Yahubyan, D. Vega, A. Bulski, J. Saez-Vasquez, M.A. Hakimi, S. Lerbs-Mache, V. Colot, T. Lagrange Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis Genes Dev 19 2005 2030 2040
-
(2005)
Genes Dev
, vol.19
, pp. 2030-2040
-
-
Pontier, D.1
Yahubyan, G.2
Vega, D.3
Bulski, A.4
Saez-Vasquez, J.5
Hakimi, M.A.6
Lerbs-Mache, S.7
Colot, V.8
Lagrange, T.9
-
48
-
-
58649104893
-
Subunit compositions of the RNA-silencing enzymes Pol IV and Pol v reveal their origins as specialized forms of RNA polymerase II
-
T.S. Ream, J.R. Haag, A.T. Wierzbicki, C.D. Nicora, A.D. Norbeck, J.K. Zhu, G. Hagen, T.J. Guilfoyle, L. Pasa-Tolic, C.S. Pikaard Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II Mol. Cell 33 2009 192 203
-
(2009)
Mol. Cell
, vol.33
, pp. 192-203
-
-
Ream, T.S.1
Haag, J.R.2
Wierzbicki, A.T.3
Nicora, C.D.4
Norbeck, A.D.5
Zhu, J.K.6
Hagen, G.7
Guilfoyle, T.J.8
Pasa-Tolic, L.9
Pikaard, C.S.10
-
49
-
-
79959838293
-
Independent chromatin binding of ARGONAUTE4 and SPT5L/KTF1 mediates transcriptional gene silencing
-
M.J. Rowley, M.I. Avrutsky, C.J. Sifuentes, L. Pereira, A.T. Wierzbicki Independent chromatin binding of ARGONAUTE4 and SPT5L/KTF1 mediates transcriptional gene silencing PLoS Genetics 7 2011 e1002120
-
(2011)
PLoS Genetics
, vol.7
, pp. e1002120
-
-
Rowley, M.J.1
Avrutsky, M.I.2
Sifuentes, C.J.3
Pereira, L.4
Wierzbicki, A.T.5
-
50
-
-
84896838845
-
The ability to form homodimers is essential for RDM1 to function in RNA-directed DNA methylation
-
T. Sasaki, Z.J. Lorkovic, S.C. Liang, A.J. Matzke, M. Matzke The ability to form homodimers is essential for RDM1 to function in RNA-directed DNA methylation PloS One 9 2014 e88190
-
(2014)
PloS One
, vol.9
, pp. e88190
-
-
Sasaki, T.1
Lorkovic, Z.J.2
Liang, S.C.3
Matzke, A.J.4
Matzke, M.5
-
51
-
-
70049096990
-
Induction of RNA-directed DNA methylation upon decondensation of constitutive heterochromatin
-
V.K. Schoft, N. Chumak, M. Mosiolek, L. Slusarz, V. Komnenovic, L. Brownfield, D. Twell, T. Kakutani, H. Tamaru Induction of RNA-directed DNA methylation upon decondensation of constitutive heterochromatin EMBO Rep 10 2009 1015 1021
-
(2009)
EMBO Rep
, vol.10
, pp. 1015-1021
-
-
Schoft, V.K.1
Chumak, N.2
Mosiolek, M.3
Slusarz, L.4
Komnenovic, V.5
Brownfield, L.6
Twell, D.7
Kakutani, T.8
Tamaru, H.9
-
52
-
-
34347382532
-
An SNF2 protein associated with nuclear RNA silencing and the spread of a silencing signal between cells in Arabidopsis.
-
L.M. Smith, O. Pontes, I. Searle, N. Yelina, F.K. Yousafzai, A.J. Herr, C.S. Pikaard, D.C. Baulcombe An SNF2 protein associated with nuclear RNA silencing and the spread of a silencing signal between cells in Arabidopsis. Plant Cell 19 2007 1507 1521
-
(2007)
Plant Cell
, vol.19
, pp. 1507-1521
-
-
Smith, L.M.1
Pontes, O.2
Searle, I.3
Yelina, N.4
Yousafzai, F.K.5
Herr, A.J.6
Pikaard, C.S.7
Baulcombe, D.C.8
-
53
-
-
84872614860
-
Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome
-
H. Stroud, M.V. Greenberg, S. Feng, Y.V. Bernatavichute, S.E. Jacobsen Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome Cell 152 2013 352 364
-
(2013)
Cell
, vol.152
, pp. 352-364
-
-
Stroud, H.1
Greenberg, M.V.2
Feng, S.3
Bernatavichute, Y.V.4
Jacobsen, S.E.5
-
54
-
-
84861176807
-
Functional consequences of subunit diversity in RNA polymerases II and v
-
E.H. Tan, T. Blevins, T.S. Ream, C.S. Pikaard Functional consequences of subunit diversity in RNA polymerases II and V Cell Rep 1 2012 208 214
-
(2012)
Cell Rep
, vol.1
, pp. 208-214
-
-
Tan, E.H.1
Blevins, T.2
Ream, T.S.3
Pikaard, C.S.4
-
55
-
-
62549160981
-
A role for RNAi in the selective correction of DNA methylation defects
-
F.K. Teixeira, F. Heredia, A. Sarazin, F. Roudier, M. Boccara, C. Ciaudo, C. Cruaud, J. Poulain, M. Berdasco, M.F. Fraga et al. A role for RNAi in the selective correction of DNA methylation defects Science 323 2009 1600 1604
-
(2009)
Science
, vol.323
, pp. 1600-1604
-
-
Teixeira, F.K.1
Heredia, F.2
Sarazin, A.3
Roudier, F.4
Boccara, M.5
Ciaudo, C.6
Cruaud, C.7
Poulain, J.8
Berdasco, M.9
Fraga, M.F.10
-
56
-
-
84865102012
-
Spatial and functional relationships among Pol V-associated loci, Pol IV-dependent siRNAs, and cytosine methylation in the Arabidopsis epigenome
-
A.T. Wierzbicki, R. Cocklin, A. Mayampurath, R. Lister, M.J. Rowley, B.D. Gregory, J.R. Ecker, H. Tang, C.S. Pikaard Spatial and functional relationships among Pol V-associated loci, Pol IV-dependent siRNAs, and cytosine methylation in the Arabidopsis epigenome Genes Dev 26 2012 1825 1836
-
(2012)
Genes Dev
, vol.26
, pp. 1825-1836
-
-
Wierzbicki, A.T.1
Cocklin, R.2
Mayampurath, A.3
Lister, R.4
Rowley, M.J.5
Gregory, B.D.6
Ecker, J.R.7
Tang, H.8
Pikaard, C.S.9
-
57
-
-
55449131096
-
Noncoding transcription by RNA polymerase Pol IVb/Pol v mediates transcriptional silencing of overlapping and adjacent genes
-
A.T. Wierzbicki, J.R. Haag, C.S. Pikaard Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes Cell 135 2008 635 648
-
(2008)
Cell
, vol.135
, pp. 635-648
-
-
Wierzbicki, A.T.1
Haag, J.R.2
Pikaard, C.S.3
-
59
-
-
19344374219
-
Genetic and functional diversification of small RNA pathways in plants
-
Z. Xie, L.K. Johansen, A.M. Gustafson, K.D. Kasschau, A.D. Lellis, D. Zilberman, S.E. Jacobsen, J.C. Carrington Genetic and functional diversification of small RNA pathways in plants PLoS Biology 2 2004 E104
-
(2004)
PLoS Biology
, vol.2
, pp. E104
-
-
Xie, Z.1
Johansen, L.K.2
Gustafson, A.M.3
Kasschau, K.D.4
Lellis, A.D.5
Zilberman, D.6
Jacobsen, S.E.7
Carrington, J.C.8
-
60
-
-
84862989445
-
Cytoplasmic assembly and selective nuclear import of Arabidopsis Argonaute4/siRNA complexes
-
R. Ye, W. Wang, T. Iki, C. Liu, Y. Wu, M. Ishikawa, X. Zhou, Y. Qi Cytoplasmic assembly and selective nuclear import of Arabidopsis Argonaute4/siRNA complexes Mol. Cell 46 2012 859 870
-
(2012)
Mol. Cell
, vol.46
, pp. 859-870
-
-
Ye, R.1
Wang, W.2
Iki, T.3
Liu, C.4
Wu, Y.5
Ishikawa, M.6
Zhou, X.7
Qi, Y.8
-
62
-
-
84875741680
-
The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin
-
A. Zemach, M.Y. Kim, P.H. Hsieh, D. Coleman-Derr, L. Eshed-Williams, K. Thao, S.L. Harmer, D. Zilberman The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin Cell 153 2013 193 205
-
(2013)
Cell
, vol.153
, pp. 193-205
-
-
Zemach, A.1
Kim, M.Y.2
Hsieh, P.H.3
Coleman-Derr, D.4
Eshed-Williams, L.5
Thao, K.6
Harmer, S.L.7
Zilberman, D.8
-
63
-
-
84877866795
-
DTF1 is a core component of RNA-directed DNA methylation and may assist in the recruitment of Pol IV
-
H. Zhang, Z.Y. Ma, L. Zeng, K. Tanaka, C.J. Zhang, J. Ma, G. Bai, P. Wang, S.W. Zhang, Z.W. Liu et al. DTF1 is a core component of RNA-directed DNA methylation and may assist in the recruitment of Pol IV Proc. Natl Acad. Sci. U S A 110 2013 8290 8295
-
(2013)
Proc. Natl Acad. Sci. U S A
, vol.110
, pp. 8290-8295
-
-
Zhang, H.1
Ma, Z.Y.2
Zeng, L.3
Tanaka, K.4
Zhang, C.J.5
Ma, J.6
Bai, G.7
Wang, P.8
Zhang, S.W.9
Liu, Z.W.10
-
64
-
-
34248340993
-
Role of RNA polymerase IV in plant small RNA metabolism
-
X. Zhang, I.R. Henderson, C. Lu, P.J. Green, S.E. Jacobsen Role of RNA polymerase IV in plant small RNA metabolism Proc. Natl Acad. Sci. U S A 104 2007 4536 4541
-
(2007)
Proc. Natl Acad. Sci. U S A
, vol.104
, pp. 4536-4541
-
-
Zhang, X.1
Henderson, I.R.2
Lu, C.3
Green, P.J.4
Jacobsen, S.E.5
-
65
-
-
72849124237
-
Intergenic transcription by RNA polymerase II coordinates Pol IV and Pol v in siRNA-directed transcriptional gene silencing in Arabidopsis
-
B. Zheng, Z. Wang, S. Li, B. Yu, J.Y. Liu, X. Chen Intergenic transcription by RNA polymerase II coordinates Pol IV and Pol V in siRNA-directed transcriptional gene silencing in Arabidopsis Genes Dev 23 2009 2850 2860
-
(2009)
Genes Dev
, vol.23
, pp. 2850-2860
-
-
Zheng, B.1
Wang, Z.2
Li, S.3
Yu, B.4
Liu, J.Y.5
Chen, X.6
-
66
-
-
84901379529
-
Molecular mechanism of action of plant DRM de novo DNA methyltransferases
-
X. Zhong, J. Du, C.J. Hale, J. Gallego-Bartolome, S. Feng, A.A. Vashisht, J. Chory, J.A. Wohlschlegel, D.J. Patel, S.E. Jacobsen Molecular mechanism of action of plant DRM de novo DNA methyltransferases Cell 157 2014 1050 1060
-
(2014)
Cell
, vol.157
, pp. 1050-1060
-
-
Zhong, X.1
Du, J.2
Hale, C.J.3
Gallego-Bartolome, J.4
Feng, S.5
Vashisht, A.A.6
Chory, J.7
Wohlschlegel, J.A.8
Patel, D.J.9
Jacobsen, S.E.10
-
67
-
-
84866117758
-
DDR complex facilitates global association of RNA polymerase v to promoters and evolutionarily young transposons
-
X. Zhong, C.J. Hale, J.A. Law, L.M. Johnson, S. Feng, A. Tu, S.E. Jacobsen DDR complex facilitates global association of RNA polymerase V to promoters and evolutionarily young transposons Nat. Struct. Mol. Biol 19 2012 870 875
-
(2012)
Nat. Struct. Mol. Biol
, vol.19
, pp. 870-875
-
-
Zhong, X.1
Hale, C.J.2
Law, J.A.3
Johnson, L.M.4
Feng, S.5
Tu, A.6
Jacobsen, S.E.7
-
68
-
-
84872787042
-
A SWI/SNF chromatin-remodeling complex acts in noncoding RNA-mediated transcriptional silencing
-
Y. Zhu, M.J. Rowley, G. Bohmdorfer, A.T. Wierzbicki A SWI/SNF chromatin-remodeling complex acts in noncoding RNA-mediated transcriptional silencing Mol. Cell 49 2013 298 309
-
(2013)
Mol. Cell
, vol.49
, pp. 298-309
-
-
Zhu, Y.1
Rowley, M.J.2
Bohmdorfer, G.3
Wierzbicki, A.T.4
-
69
-
-
0037474126
-
ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation
-
D. Zilberman, X. Cao, S.E. Jacobsen ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation Science 299 2003 716 719
-
(2003)
Science
, vol.299
, pp. 716-719
-
-
Zilberman, D.1
Cao, X.2
Jacobsen, S.E.3
|