-
1
-
-
0034945083
-
The complete genome of the crenarchaeon Sulfolobus solfataricus P2
-
She, Q.; Singh, R.K.; Confalonieri, F.; Zivanovic, Y.; Gordon, P.; Allard, G.; Awayez, M.J.; Chan-Weiher, C.-Y.; Clausen, I.G.; Curtis, B, et al. The complete genome of the crenarchaeon Sulfolobus solfataricus P2. Proc. Natl. Acad. Sci. USA 2001, 98, 7835–7840.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 7835-7840
-
-
She, Q.1
Singh, R.K.2
Confalonieri, F.3
Zivanovic, Y.4
Gordon, P.5
Allard, G.6
Awayez, M.J.7
Chan-Weiher, C.-Y.8
Clausen, I.G.9
Curtis, B.10
-
2
-
-
18144447330
-
Genetic elements in the extremely thermophilic archaeon Sulfolobus
-
Zillig, W.; Arnold, H.P.; Holz, I.; Prangishvili, D.; Schweier, A.; Stedman, K.; She, Q.; Phan, H.; Garrett, R.A.; Kristjansson, J.K. Genetic elements in the extremely thermophilic archaeon Sulfolobus. Extremophiles 1998, 2, 131–140.
-
(1998)
Extremophiles
, vol.2
, pp. 131-140
-
-
Zillig, W.1
Arnold, H.P.2
Holz, I.3
Prangishvili, D.4
Schweier, A.5
Stedman, K.6
She, Q.7
Phan, H.8
Garrett, R.A.9
Kristjansson, J.K.10
-
3
-
-
84879009908
-
Discovery and seminal developments in the CRISPR field
-
Barrangou, R., van der Oost, J., Eds.; Springer: Berlin/Heidelberg, Germany
-
Mojica, F.J.M.; Garrett, R.A. Discovery and seminal developments in the CRISPR field. In CRISPR-Cas Systems; Barrangou, R., van der Oost, J., Eds.; Springer: Berlin/Heidelberg, Germany, 2013; pp. 1–31.
-
(2013)
Crispr-Cas Systems
, pp. 1-31
-
-
Mojica, F.1
Garrett, R.A.2
-
4
-
-
84879017853
-
CRISPR-mediated defense mechanisms in the hyperthermophilic archaeal genus Sulfolobus
-
Manica, A.; Schleper, C. CRISPR-mediated defense mechanisms in the hyperthermophilic archaeal genus Sulfolobus. RNA Biol. 2013, 10, 671–678.
-
(2013)
RNA Biol
, vol.10
, pp. 671-678
-
-
Manica, A.1
Schleper, C.2
-
5
-
-
0038460077
-
A reporter gene system for the hyperthermophilic archaeon Sulfolobus solfataricus based on a selectable and integrative shuttle vector. Mol
-
Jonuscheit, M.; Martusewitsch, E.; Stedman, K.M.; Schleper, C. A reporter gene system for the hyperthermophilic archaeon Sulfolobus solfataricus based on a selectable and integrative shuttle vector. Mol. Microbiol. 2003, 48, 1241–1252.
-
(2003)
Microbiol
, vol.48
, pp. 1241-1252
-
-
Jonuscheit, M.1
Martusewitsch, E.2
Stedman, K.M.3
Schleper, C.4
-
6
-
-
59749097323
-
Genetic analyses in the hyperthermophilic archaeon Sulfolobus islandicus
-
She, Q.; Zhang, C.; Deng, L.; Peng, N.; Chen, Z.; Liang, Y.X. Genetic analyses in the hyperthermophilic archaeon Sulfolobus islandicus. Biochem. Soc. Trans. 2009, 37, 92–96.
-
(2009)
Biochem. Soc. Trans
, vol.37
, pp. 92-96
-
-
She, Q.1
Zhang, C.2
Deng, L.3
Peng, N.4
Chen, Z.5
Liang, Y.X.6
-
7
-
-
70349462511
-
Unmarked gene deletion and host-vector system for the hyperthermophilic crenarchaeon Sulfolobus islandicus
-
Deng, L.; Zhu, H.; Chen, Z.; Liang, Y.X.; She, Q. Unmarked gene deletion and host-vector system for the hyperthermophilic crenarchaeon Sulfolobus islandicus. Extremophiles 2009, 13, 735–746.
-
(2009)
Extremophiles
, vol.13
, pp. 735-746
-
-
Deng, L.1
Zhu, H.2
Chen, Z.3
Liang, Y.X.4
She, Q.5
-
8
-
-
78049516991
-
Revealing the essentiality of multiple archaeal pcna genes using a mutant propagation assay based on an improved knockout method
-
Zhang, C.; Guo, L.; Deng, L.; Wu, Y.; Liang, Y.; Huang, L.; She, Q. Revealing the essentiality of multiple archaeal pcna genes using a mutant propagation assay based on an improved knockout method. Microbiology 2010, 156, 3386–3397.
-
(2010)
Microbiology
, vol.156
, pp. 3386-3397
-
-
Zhang, C.1
Guo, L.2
Deng, L.3
Wu, Y.4
Liang, Y.5
Huang, L.6
She, Q.7
-
9
-
-
79953887840
-
In vivo activity of CRISPR-mediated virus defence in a hyperthermophilic archaeon
-
Manica, A.; Zebec, Z.; Teichmann, D.; Schleper, C. In vivo activity of CRISPR-mediated virus defence in a hyperthermophilic archaeon. Mol. Microbiol. 2011, 80, 481–491.
-
(2011)
Mol. Microbiol
, vol.80
, pp. 481-491
-
-
Manica, A.1
Zebec, Z.2
Teichmann, D.3
Schleper, C.4
-
10
-
-
84866173365
-
Synthetic arabinose-inducible promoter confers high levels of recombinant protein expression in hyperthermophilic archaeon Sulfolobus islandicus
-
Peng, N.; Deng, L.; Mei, Y.; Jiang, D.; Hu, Y.; Awayez, M.; Liang, Y.; She, Q. A synthetic arabinose-inducible promoter confers high levels of recombinant protein expression in hyperthermophilic archaeon Sulfolobus islandicus. Appl. Environ. Microbiol. 2012, 78, 5630–5637.
-
(2012)
Appl. Environ. Microbiol
, vol.78
, pp. 5630-5637
-
-
Peng, N.1
Deng, L.2
Mei, Y.3
Jiang, D.4
Hu, Y.5
Awayez, M.6
Liang, Y.7
She, Q.A.8
-
11
-
-
84867081093
-
Versatile Genetic Tool Box for the Crenarchaeote Sulfolobus acidocaldarius
-
Wagner, M.; van Wolferen, M.; Wagner, A.; Lassak, K.; Meyer, B.H.; Reimann, J.; Albers, S.V. Versatile Genetic Tool Box for the Crenarchaeote Sulfolobus acidocaldarius. Front. Microbiol. 2012, 3, doi:10.3389/fmicb.2012.00214.eCollection 2012.
-
(2012)
Front. Microbiol
, pp. 3
-
-
Wagner, M.1
Van Wolferen, M.2
Wagner, A.3
Lassak, K.4
Meyer, B.H.5
Reimann, J.6
Albers, S.V.7
-
12
-
-
84873177312
-
Sulfolobus islandicus: A model system for evolutionary genomics. Biochem. Soc
-
Zhang, C.; Krause, D.J.; Whitaker, R.J. Sulfolobus islandicus: A model system for evolutionary genomics. Biochem. Soc. Trans. 2013, 41, 458–462.
-
(2013)
Trans
, vol.41
, pp. 458-462
-
-
Zhang, C.1
Krause, D.J.2
Whitaker, R.J.3
-
13
-
-
16444385662
-
Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements
-
Mojica, F.J.; Díez-Villaseñor, C.; García-Martínez, J.; Soria, E. Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements. J. Mol. Evol. 2005, 60, 174–182.
-
(2005)
J. Mol. Evol
, vol.60
, pp. 174-182
-
-
Mojica, F.J.1
Díez-Villaseñor, C.2
García-Martínez, J.3
Soria, E.4
-
14
-
-
15844390228
-
CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies
-
Pourcel, C.; Salvignol, G.; Vergnaud, G. CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies. Microbiology 2005, 151, 653–663.
-
(2005)
Microbiology
, vol.151
, pp. 653-663
-
-
Pourcel, C.1
Salvignol, G.2
Vergnaud, G.3
-
15
-
-
23844505202
-
Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin
-
Bolotin, A.; Quinquis, B.; Sorokin, A.; Ehrlich, S.D. Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin. Microbiology 2005, 151, 2551–2561.
-
(2005)
Microbiology
, vol.151
, pp. 2551-2561
-
-
Bolotin, A.1
Quinquis, B.2
Sorokin, A.3
Ehrlich, S.D.4
-
16
-
-
33750105412
-
Viruses of the Archaea: A unifying view. Nat
-
Prangishvili, D.; Forterre, P.; Garrett, R.A. Viruses of the Archaea: A unifying view. Nat. Rev. Microbiol. 2006, 4, 837–848.
-
(2006)
Rev. Microbiol
, vol.4
, pp. 837-848
-
-
Prangishvili, D.1
Forterre, P.2
Garrett, R.A.3
-
17
-
-
80051789941
-
The archaeoviruses. FEMS Microbiol
-
Pina, M.; Bize, A.; Forterre, P.; Prangishvili, D. The archaeoviruses. FEMS Microbiol. Rev. 2011, 35, 1035–1054.
-
(2011)
Rev
, vol.35
, pp. 1035-1054
-
-
Pina, M.1
Bize, A.2
Forterre, P.3
Prangishvili, D.4
-
18
-
-
84910124928
-
Viruses of haloarchaea
-
Luk, A.W.S.; Williams, T.J.; Erdmann, S.; Papke, R.T.; Cavicchioli, R. Viruses of haloarchaea. Life 2014, 4, 681–715.
-
(2014)
Life
, vol.4
, pp. 681-715
-
-
Luk, A.1
Williams, T.J.2
Erdmann, S.3
Papke, R.T.4
Cavicchioli, R.5
-
19
-
-
84924408439
-
Archaeal extrachromosomal genetic elements. Microbiol
-
Wang, H.; Peng, N.; Shah, S.A.; Huang, L.; She, Q. Archaeal extrachromosomal genetic elements. Microbiol. Mol. Biol. Rev. 2015, 79, 117–152.
-
(2015)
Mol. Biol. Rev
, vol.79
, pp. 117-152
-
-
Wang, H.1
Peng, N.2
Shah, S.A.3
Huang, L.4
She, Q.5
-
20
-
-
84861313038
-
Identification of novel positive-strand RNA viruses by metagenomic analysis of archaea-dominated Yellowstone hot springs
-
Bolduc, B.; Shaughnessy, D.P.; Wolf, Y.I.; Koonin, E.V.; Roberto, F.F.; Young, M. Identification of novel positive-strand RNA viruses by metagenomic analysis of archaea-dominated Yellowstone hot springs. J. Virol. 2012, 86, 5562–5573.
-
(2012)
J. Virol
, vol.86
, pp. 5562-5573
-
-
Bolduc, B.1
Shaughnessy, D.P.2
Wolf, Y.I.3
Koonin, E.V.4
Roberto, F.F.5
Young, M.6
-
22
-
-
0029128732
-
Multicopy plasmid of the extremely thermophilic archaeon Sulfolobus effects its transfer to recipients by mating
-
Schleper C.; Holz, I.; Janekovic, D.; Murphy, J.; Zillig, W. A multicopy plasmid of the extremely thermophilic archaeon Sulfolobus effects its transfer to recipients by mating. J. Bacteriol. 1995, 177, 4417–4426.
-
(1995)
J. Bacteriol
, vol.177
, pp. 4417-4426
-
-
Schleper, C.1
Holz, I.2
Janekovic, D.3
Murphy, J.4
Zillig, W.A.5
-
23
-
-
0032213855
-
Genetic profile of pNOB8 from Sulfolobus
-
She, Q.; Phan, H.; Garrett, R.A.; Albers, S-V.; Stedman, K.M.; Zillig, W. Genetic profile of pNOB8 from Sulfolobus: The first conjugative plasmid from an archaeon. Extremophiles 1998, 2, 417–425.
-
(1998)
The First Conjugative Plasmid from an Archaeon. Extremophiles
, vol.2
, pp. 417-425
-
-
She, Q.1
Phan, H.2
Garrett, R.A.3
Albers, S.-V.4
Stedman, K.M.5
Zillig, W.6
-
24
-
-
0031733835
-
Conjugation in archaea: Frequent occurrence of conjugative plasmids in Sulfolobus
-
Prangishvili, D.; Albers, S.-V.; Holz, I.; Arnold, H.P.; Stedman, K.; Klein, T.; Singh, H.; Hiort, J.; Schweier, A.; Kristjansson, J.K, et al. Conjugation in archaea: Frequent occurrence of conjugative plasmids in Sulfolobus. Plasmid 1998, 40, 190–202.
-
(1998)
Plasmid
, vol.40
, pp. 190-202
-
-
Prangishvili, D.1
Albers, S.-V.2
Holz, I.3
Arnold, H.P.4
Stedman, K.5
Klein, T.6
Singh, H.7
Hiort, J.8
Schweier, A.9
Kristjansson, J.K.10
-
25
-
-
0034460039
-
PING family of conjugative plasmids from the extremely thermophilic archaeon Sulfolobus islandicus: Insights into recombination and conjugation in Crenarchaeota
-
Stedman, K.M.; She, Q.; Phan, H.; Holz, I.; Singh, H.; Prangishvili, D.; Garrett, R.; Zillig, W. pING family of conjugative plasmids from the extremely thermophilic archaeon Sulfolobus islandicus: Insights into recombination and conjugation in Crenarchaeota. J. Bacteriol. 2000, 182, 7014–7020.
-
(2000)
J. Bacteriol
, vol.182
, pp. 7014-7020
-
-
Stedman, K.M.1
She, Q.2
Phan, H.3
Holz, I.4
Singh, H.5
Prangishvili, D.6
Garrett, R.7
Zillig, W.8
-
26
-
-
8744225606
-
Genomic comparison of archaeal conjugative plasmids from Sulfolobus
-
Greve, B.; Jensen, S.; Brügger, K.; Zillig, W.; Garrett, R.A. Genomic comparison of archaeal conjugative plasmids from Sulfolobus. Archaea 2004, 1, 231–239.
-
(2004)
Archaea
, vol.1
, pp. 231-239
-
-
Greve, B.1
Jensen, S.2
Brügger, K.3
Zillig, W.4
Garrett, R.A.5
-
27
-
-
33746039325
-
Two novel conjugative plasmids from a single strain of Sulfolobus
-
Erauso, G.; Stedman, K.M.; van de Werken, H.J.; Zillig, W.; van der Oost, J. Two novel conjugative plasmids from a single strain of Sulfolobus. Microbiology 2006, 152, 1951–1968.
-
(2006)
Microbiology
, vol.152
, pp. 1951-1968
-
-
Erauso, G.1
Stedman, K.M.2
Van De Werken, H.J.3
Zillig, W.4
Van Der Oost, J.5
-
28
-
-
58149122981
-
Novel archaeal plasmid pAH1 and its interactions with the lipothrixvirus AFV1
-
Basta, T.; Smyth, J.; Forterre, P.; Prangishvili, D.; Peng, X. Novel archaeal plasmid pAH1 and its interactions with the lipothrixvirus AFV1. Mol. Microbiol. 2009, 71, 23–34.
-
(2009)
Mol. Microbiol
, vol.71
, pp. 23-34
-
-
Basta, T.1
Smyth, J.2
Forterre, P.3
Prangishvili, D.4
Peng, X.5
-
29
-
-
33748096466
-
A putative viral defence mechanism in archaeal cells
-
Lillestøl, R.K.; Redder, P.; Garrett, R.A.; Brügger, K. A putative viral defence mechanism in archaeal cells. Archaea 2006, 2, 59–72.
-
(2006)
Archaea
, vol.2
, pp. 59-72
-
-
Lillestøl, R.K.1
Redder, P.2
Garrett, R.A.3
Brügger, K.4
-
30
-
-
21844477811
-
The Genome of Sulfolobus acidocaldarius, a model organism of the Crenarchaeota
-
Chen, L.; Brügger, K.; Skovgaard, M.; Redder, P.; She, Q.; Torarinsson, E.; Greve, B.; Awayez, M.; Zibat, A.; Klenk, H.-P, et al. The Genome of Sulfolobus acidocaldarius, a model organism of the Crenarchaeota. J. Bacteriol. 2005, 187, 4992–4999.
-
(2005)
J. Bacteriol
, vol.187
, pp. 4992-4999
-
-
Chen, L.1
Brügger, K.2
Skovgaard, M.3
Redder, P.4
She, Q.5
Torarinsson, E.6
Greve, B.7
Awayez, M.8
Zibat, A.9
Klenk, H.-P.10
-
31
-
-
79956157571
-
Evolution and classification of the CRISPR-Cas systems
-
Makarova, K.S.; Haft, D.H.; Barrangou, R.; Brouns, S.J.; Charpentier, E.; Horvath, P.; Moineau, S.; Mojica, F.J.; Wolf, Y.I.; Yakunin, A.F, et al. Evolution and classification of the CRISPR-Cas systems. Nat. Rev. Microbiol. 2011, 9, 467–477.
-
(2011)
Nat. Rev. Microbiol
, vol.9
, pp. 467-477
-
-
Makarova, K.S.1
Haft, D.H.2
Barrangou, R.3
Brouns, S.J.4
Charpentier, E.5
Horvath, P.6
Moineau, S.7
Mojica, F.J.8
Wolf, Y.I.9
Yakunin, A.F.10
-
32
-
-
0030670627
-
RNA-protein interactions of an archaeal homotetrameric splicing endonuclease with an exceptional evolutionary history
-
Lykke-Andersen, J.; Garrett, R.A. RNA-protein interactions of an archaeal homotetrameric splicing endonuclease with an exceptional evolutionary history. EMBO J. 1997, 16, 6290–6300.
-
(1997)
EMBO J
, vol.16
, pp. 6290-6300
-
-
Lykke-Andersen, J.1
Garrett, R.A.2
-
33
-
-
0037082426
-
RNomics in archaea reveals a further link between splicing of archaeal introns and rRNA processing
-
Tang, T.H.; Rozhdestvensky, T.S.; d’Orval, B.C.; Bortolin, M.L.; Huber, H.; Charpentier, B.; Branlant, C.; Bachellerie, J.P.; Brosius, J.; Hüttenhofer, A. RNomics in archaea reveals a further link between splicing of archaeal introns and rRNA processing. Nucleic Acids Res. 2002, 30, 921–930.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 921-930
-
-
Tang, T.H.1
Rozhdestvensky, T.S.2
D’orval, B.C.3
Bortolin, M.L.4
Huber, H.5
Charpentier, B.6
Branlant, C.7
Bachellerie, J.P.8
Brosius, J.9
Hüttenhofer, A.10
-
34
-
-
79953250082
-
CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III
-
Deltcheva, E.; Chylinski, K.; Sharma, C.M.; Gonzales, K.; Chao, Y.; Pirzada, Z.A.; Eckert, M.R.; Vogel, J.; Charpentier, E. CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III. Nature 2011, 471, 602–607.
-
(2011)
Nature
, vol.471
, pp. 602-607
-
-
Deltcheva, E.1
Chylinski, K.2
Sharma, C.M.3
Gonzales, K.4
Chao, Y.5
Pirzada, Z.A.6
Eckert, M.R.7
Vogel, J.8
Charpentier, E.9
-
35
-
-
79960554003
-
Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems
-
Makarova, K.S.; Aravind, L.; Wolf, Y.I.; Koonin, E.V. Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems. Biol. Direct 2011, 6, doi:10.1186/1745-6150-6-38.
-
(2011)
Biol. Direct
, pp. 6
-
-
Makarova, K.S.1
Aravind, L.2
Wolf, Y.I.3
Koonin, E.V.4
-
36
-
-
84896900602
-
CRISPR adaptive immune systems of Archaea
-
Vestergaard, G.; Garrett, R.A.; Shah, S.A. CRISPR adaptive immune systems of Archaea. RNA Biol. 2014, 11, 157–168.
-
(2014)
RNA Biol
, vol.11
, pp. 157-168
-
-
Vestergaard, G.1
Garrett, R.A.2
Shah, S.A.3
-
37
-
-
62949197925
-
CRISPR families of the crenarchaeal genus Sulfolobus
-
Lillestøl, R.K.; Shah, S.A.; Brügger, K.; Redder, P.; Phan, H.; Christiansen, J.; Garrett, R.A. CRISPR families of the crenarchaeal genus Sulfolobus: Bidirectional transcription and dynamic properties. Mol. Microbiol. 2009, 72, 259–272.
-
(2009)
Bidirectional Transcription and Dynamic Properties. Mol. Microbiol
, vol.72
, pp. 259-272
-
-
Lillestøl, R.K.1
Shah, S.A.2
Brügger, K.3
Redder, P.4
Phan, H.5
Christiansen, J.6
Garrett, R.A.7
-
38
-
-
78650254130
-
CRISPR/Cas and Cmr modules, mobility and evolution of adaptive immune systems
-
Shah, S.A.; Garrett, R.A. CRISPR/Cas and Cmr modules, mobility and evolution of adaptive immune systems. Res Microbiol. 2011, 162, 27–38.
-
(2011)
Res Microbiol
, vol.162
, pp. 27-38
-
-
Shah, S.A.1
Garrett, R.A.2
-
39
-
-
80755153697
-
Archaeal CRISPR-based immune systems: Exchangeable functional modules
-
Garrett, R.A.; Vestergaard, G.; Shah, S.A. Archaeal CRISPR-based immune systems: Exchangeable functional modules. Trends Microbiol. 2011, 19, 549–556.
-
(2011)
Trends Microbiol
, vol.19
, pp. 549-556
-
-
Garrett, R.A.1
Vestergaard, G.2
Shah, S.A.3
-
40
-
-
84903363942
-
CRISPR-Cas functional module exchange in Escherichia coli
-
Almendros, C.; Mojica, F.J.M.; Díez-Villaseñor, C.; Guzmán, N.M.; García-Martínez, J. CRISPR-Cas functional module exchange in Escherichia coli. MBio 2014, 5, doi:10.1128/ mBio.00767-13.
-
(2014)
Mbio
, pp. 5
-
-
Almendros, C.1
Mojica, F.2
Díez-Villaseñor, C.3
Guzmán, N.M.4
García-Martínez, J.5
-
41
-
-
34248400310
-
A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes
-
Haft, D.H.; Selengut, J.; Mongodin, E.F.; Nelson, K.E. A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes. PLoS Comput. Biol. 2005, 1, doi:10.1371/journal.pcbi.0010060.eor.
-
(2005)
Plos Comput. Biol
, pp. 1
-
-
Haft, D.H.1
Selengut, J.2
Mongodin, E.F.3
Nelson, K.E.4
-
42
-
-
79551495231
-
CRISPR-based immune systems of the Sulfolobales
-
Garrett, R.A.; Shah, S.A.; Vestergaard, G.; Deng, L.; Gudbergsdottir, S.; Kenchappa, C.S.; Erdmann, S.; She, Q. CRISPR-based immune systems of the Sulfolobales: Complexity and diversity. Biochem. Soc. Trans. 2011, 39, 51–57.
-
(2011)
Complexity and Diversity. Biochem. Soc. Trans
, vol.39
, pp. 51-57
-
-
Garrett, R.A.1
Shah, S.A.2
Vestergaard, G.3
Deng, L.4
Gudbergsdottir, S.5
Kenchappa, C.S.6
Erdmann, S.7
She, Q.8
-
43
-
-
70449753811
-
RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex
-
Hale, C.R.; Zhao, P.; Olson, S.; Duff, M.O.; Graveley, B.R.; Wells, L.; Terns, R.M.; Terns, M.P. RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex. Cell 2009, 139, 945–956.
-
(2009)
Cell
, vol.139
, pp. 945-956
-
-
Hale, C.R.1
Zhao, P.2
Olson, S.3
Duff, M.O.4
Graveley, B.R.5
Wells, L.6
Terns, R.M.7
Terns, M.P.8
-
44
-
-
84856778250
-
Structure and mechanism of the CMR complex for CRISPR-mediated antiviral immunity
-
Zhang, J.; Rouillon, C.; Kerou, M.; Reeks, J.; Brügger, K.; Graham, S.; Reimann, J.; Cannone, G.; Liu, H.; Albers, S.V.; Naismith, J.H.; Spagnolo, L. Structure and mechanism of the CMR complex for CRISPR-mediated antiviral immunity. Mol. Cell 2012, 45, 303–313.
-
(2012)
Mol. Cell
, vol.45
, pp. 303-313
-
-
Zhang, J.1
Rouillon, C.2
Kerou, M.3
Reeks, J.4
Brügger, K.5
Graham, S.6
Reimann, J.7
Cannone, G.8
Liu, H.9
Albers, S.V.10
Naismith, J.H.11
Spagnolo, L.12
-
45
-
-
84899048370
-
CRISPR-mediated targeted mRNA degradation in the archaeon Sulfolobus solfataricus
-
Zebec, Z.; Manica, A.; Zhang, J.; White, M.F.; Schleper, C. CRISPR-mediated targeted mRNA degradation in the archaeon Sulfolobus solfataricus. Nucleic Acids Res. 2014, 42, 5280–5288.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 5280-5288
-
-
Zebec, Z.1
Manica, A.2
Zhang, J.3
White, M.F.4
Schleper, C.5
-
46
-
-
84885334898
-
Structure and activity of the RNA-targeting type III-B CRISPR-Cas complex of Thermus thermophilus
-
Staals, R.H.; Agari, Y.; Maki-Yonekura, S.; Zhu, Y.; Taylor, D.W.; van Duijn, E.; Barendregt, A.; Vlot, M.; Koehorst, J.J.; Sakamoto, K, et al. Structure and activity of the RNA-targeting type III-B CRISPR-Cas complex of Thermus thermophilus. Mol. Cell 2013, 52, 135–145.
-
(2013)
Mol. Cell
, vol.52
, pp. 135-145
-
-
Staals, R.H.1
Agari, Y.2
Maki-Yonekura, S.3
Zhu, Y.4
Taylor, D.W.5
Van Duijn, E.6
Barendregt, A.7
Vlot, M.8
Koehorst, J.J.9
Sakamoto, K.10
-
47
-
-
84874195392
-
Novel interference mechanism by a type IIIB CRISPR-Cmr module in Sulfolobus
-
Deng, L.; Garrett, R.A.; Shah, S.A.; Peng, X.; She, Q. A novel interference mechanism by a type IIIB CRISPR-Cmr module in Sulfolobus. Mol. Microbiol. 2013, 87, 1088–1099.
-
(2013)
Mol. Microbiol
, vol.87
, pp. 1088-1099
-
-
Deng, L.1
Garrett, R.A.2
Shah, S.A.3
Peng, X.4
She, Q.A.5
-
48
-
-
84941143049
-
An archaeal CRISPR type III-B Cmr system exhibiting distinctive RNA targeting features and mediating dual RNA and DNA interference
-
Peng, W.; Feng, M.; Feng, X.; Liang, Y.X.; She, Q. An archaeal CRISPR type III-B Cmr system exhibiting distinctive RNA targeting features and mediating dual RNA and DNA interference. Nucleic Acids Res. 2015, 43, 406–417.
-
(2015)
Nucleic Acids Res
, vol.43
, pp. 406-417
-
-
Peng, W.1
Feng, M.2
Feng, X.3
Liang, Y.X.4
She, Q.5
-
49
-
-
84908456823
-
Conditional tolerance of temperate phages via transcription-dependent CRISPR-Cas targeting
-
Goldberg, G.W.; Jiang, W.; Bikard, D.; Marraffini, L.A. Conditional tolerance of temperate phages via transcription-dependent CRISPR-Cas targeting. Nature 2014, 514, 633–637.
-
(2014)
Nature
, vol.514
, pp. 633-637
-
-
Goldberg, G.W.1
Jiang, W.2
Bikard, D.3
Marraffini, L.A.4
-
50
-
-
84868685897
-
Live virus-free or die: Coupling of antivirus immunity and programmed suicide or dormancy in prokaryotes
-
Makarova, K.S.; Anantharaman, V.; Aravind, L.; Koonin, E.V. Live virus-free or die: Coupling of antivirus immunity and programmed suicide or dormancy in prokaryotes. Biol. Direct 2012, 7, doi:10.1186/1745-6150-7-40.
-
(2012)
Biol. Direct
, pp. 7
-
-
Makarova, K.S.1
Anantharaman, V.2
Aravind, L.3
Koonin, E.V.4
-
51
-
-
84884965371
-
CRISPRmap: An automated classification of repeat conservation in prokaryotic adaptive immune systems
-
Lange, S.J.; Alkhnbashi, O.S.; Rose, D.; Will, S.; Backofen, R. CRISPRmap: An automated classification of repeat conservation in prokaryotic adaptive immune systems. Nucleic Acids Res. 2013, 41, 8034–8044.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 8034-8044
-
-
Lange, S.J.1
Alkhnbashi, O.S.2
Rose, D.3
Will, S.4
Backofen, R.5
-
52
-
-
84907021656
-
CRISPRstrand: Predicting repeat orientations to determine the crRNA-encoding strand at CRISPR loci
-
Alkhnbashi, O.S.; Costa, F.; Shah, S.A.; Garrett, R.A.; Saunders, S.J.; Backofen, R. CRISPRstrand: Predicting repeat orientations to determine the crRNA-encoding strand at CRISPR loci. Bioinformatics 2014, 30, i489–i496.
-
(2014)
Bioinformatics
, vol.30
, pp. i489-i496
-
-
Alkhnbashi, O.S.1
Costa, F.2
Shah, S.A.3
Garrett, R.A.4
Saunders, S.J.5
Backofen, R.6
-
53
-
-
59749085509
-
Distributions of CRISPR spacer matches in viruses and plasmids of crenarchaeal acidothermophiles and implications for their inhibitory mechanism
-
Shah, S.A.; Hansen, N.R.; Garrett, R.A. Distributions of CRISPR spacer matches in viruses and plasmids of crenarchaeal acidothermophiles and implications for their inhibitory mechanism. Trans. Biochem. Soc. 2009, 37, 23–28.
-
(2009)
Trans. Biochem. Soc
, vol.37
, pp. 23-28
-
-
Shah, S.A.1
Hansen, N.R.2
Garrett, R.A.3
-
54
-
-
58549120798
-
Viral biogeography revealed by signatures in Sulfolobus islandicus genomes
-
Held, N.L.; Whitaker, R.J. Viral biogeography revealed by signatures in Sulfolobus islandicus genomes. Environ. Microbiol. 2009, 11, 457–466.
-
(2009)
Environ. Microbiol
, vol.11
, pp. 457-466
-
-
Held, N.L.1
Whitaker, R.J.2
-
55
-
-
79952803560
-
Genome analyses of Icelandic strains of Sulfolobus islandicus, model organisms for genetic and virus- host interaction studies
-
Guo, L.; Brügger, K.; Liu, C.; Shah, S.A.; Zheng, H.; Zhu, Y.; Wang, S.; Lillestøl, R.K.; Chen, L.; Frank, J, et al. Genome analyses of Icelandic strains of Sulfolobus islandicus, model organisms for genetic and virus- host interaction studies. J. Bacteriol. 2011, 193, 1672–1680.
-
(2011)
J. Bacteriol
, vol.193
, pp. 1672-1680
-
-
Guo, L.1
Brügger, K.2
Liu, C.3
Shah, S.A.4
Zheng, H.5
Zhu, Y.6
Wang, S.7
Lillestøl, R.K.8
Chen, L.9
Frank, J.10
-
56
-
-
84924354942
-
CRISPR/Cas and CRISPR/Cmr Immune Systems of Archaea
-
Marchfelder, A., Hess, W., Eds.; Springer: Berlin/Heidelberg, Germany
-
Shah, S.A.; Vestergaard, G.; Garrett, R.A. CRISPR/Cas and CRISPR/Cmr Immune Systems of Archaea. In Regulatory RNAs in Prokaryotes; Marchfelder, A., Hess, W., Eds.; Springer: Berlin/Heidelberg, Germany, 2012; pp. 163–181.
-
(2012)
Regulatory Rnas in Prokaryotes
, pp. 163-181
-
-
Shah, S.A.1
Vestergaard, G.2
Garrett, R.A.3
-
58
-
-
84877765697
-
Genomics and genetics of Sulfolobus islandicus LAL14/1, a model hyperthermophilic archaeon
-
Jaubert, C.; Danioux, C.; Oberto, J.; Cortez, D.; Bize, A.; Krupovic, M.; She, Q.; Forterre, P.; Prangishvili, D.; Sezonov, G. Genomics and genetics of Sulfolobus islandicus LAL14/1, a model hyperthermophilic archaeon. Open Biol. 2013, 3, doi:10.1098/rsob.130010.
-
(2013)
Open Biol
, pp. 3
-
-
Jaubert, C.1
Danioux, C.2
Oberto, J.3
Cortez, D.4
Bize, A.5
Krupovic, M.6
She, Q.7
Forterre, P.8
Prangishvili, D.9
Sezonov, G.10
-
59
-
-
84879026965
-
Protospacer motifs: Mixed identities and functional diversity
-
Shah, S.A.; Erdmann, S.; Mojica, F.J.; Garrett, R.A. Protospacer motifs: Mixed identities and functional diversity. RNA Biol. 2013, 10, 891–899, doi:10.4161/rna.23764.
-
(2013)
RNA Biol
, vol.10
, pp. 891-899
-
-
Shah, S.A.1
Erdmann, S.2
Mojica, F.J.3
Garrett, R.A.4
-
60
-
-
0037188531
-
Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fulgidus
-
Tang, T.H.; Bachellerie, J.P.; Rozhdestvensky, T.; Bortolin, M.L.; Huber, H.; Drungowski, M.; Elge, T.; Brosius, J.; Hüttenhofer, A. Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fulgidus. Proc. Natl. Acad. Sci. USA 2002, 99, 7536–7541.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 7536-7541
-
-
Tang, T.H.1
Bachellerie, J.P.2
Rozhdestvensky, T.3
Bortolin, M.L.4
Huber, H.5
Drungowski, M.6
Elge, T.7
Brosius, J.8
Hüttenhofer, A.9
-
61
-
-
13144269598
-
Identification of novel non-coding RNAs as potential antisense regulators in the archaeon Sulfolobus solfataricus
-
Tang, T.H.; Polacek, N.; Zywicki, M.; Huber, H.; Brügger, K.; Garrett, R.A.; Bachellerie, J.P.; Hüttenhofer, A. Identification of novel non-coding RNAs as potential antisense regulators in the archaeon Sulfolobus solfataricus. Mol. Microbiol. 2005, 55, 469–481.
-
(2005)
Mol. Microbiol
, vol.55
, pp. 469-481
-
-
Tang, T.H.1
Polacek, N.2
Zywicki, M.3
Huber, H.4
Brügger, K.5
Garrett, R.A.6
Bachellerie, J.P.7
Hüttenhofer, A.8
-
62
-
-
79958754524
-
Structural and functional characterization of an archaeal CASCADE complex for CRISPR-mediated viral defense
-
Lintner, N.G.; Kerou, M.; Brumfield, S.K.; Graham, S.; Liu, H.; Naismith, J.H.; Sdano, M.; Peng, N.; She, Q.; Copie, V, et al. Structural and functional characterization of an archaeal CASCADE complex for CRISPR-mediated viral defense. J. Biol. Chem. 2011, 286, 21643–21656.
-
(2011)
J. Biol. Chem
, vol.286
, pp. 21643-21656
-
-
Lintner, N.G.1
Kerou, M.2
Brumfield, S.K.3
Graham, S.4
Liu, H.5
Naismith, J.H.6
Sdano, M.7
Peng, N.8
She, Q.9
Copie, V.10
-
63
-
-
84879020308
-
Genetic determinants of PAM-dependent DNA targeting and pre-crRNA processing in Sulfolobus islandicus
-
Peng, W.; Li, H.; Hallstrøm, S.; Peng, N.; Liang, Y.X.; She, Q. Genetic determinants of PAM-dependent DNA targeting and pre-crRNA processing in Sulfolobus islandicus. RNA Biol. 2013, 10, 738–748.
-
(2013)
RNA Biol
, vol.10
, pp. 738-748
-
-
Peng, W.1
Li, H.2
Hallstrøm, S.3
Peng, N.4
Liang, Y.X.5
She, Q.6
-
64
-
-
49649114086
-
Small CRISPR RNAs guide antiviral defense in prokaryotes
-
Brouns, S.J.; Jore, M.M.; Lundgren, M.; Westra, E.R.; Slijkhuis, R.J.; Snijders, A.P.; Dickman, M.J.; Makarova, K.S.; Koonin, E.V.; van der Oost, J. Small CRISPR RNAs guide antiviral defense in prokaryotes. Science 2008, 321, 960–964.
-
(2008)
Science
, vol.321
, pp. 960-964
-
-
Brouns, S.J.1
Jore, M.M.2
Lundgren, M.3
Westra, E.R.4
Slijkhuis, R.J.5
Snijders, A.P.6
Dickman, M.J.7
Makarova, K.S.8
Koonin, E.V.9
Van Der Oost, J.10
-
65
-
-
84877757610
-
Structure of a dimeric crenarchaeal Cas6 enzyme with an atypical active site for CRISPR RNA processing
-
Reeks, J.; Sokolowski, R.D.; Graham, S.; Liu, H.; Naismith, J.H.; White, M.F. Structure of a dimeric crenarchaeal Cas6 enzyme with an atypical active site for CRISPR RNA processing. Biochem. J. 2013, 452, 223−230.
-
(2013)
Biochem. J
, vol.452
, pp. 223-230
-
-
Reeks, J.1
Sokolowski, R.D.2
Graham, S.3
Liu, H.4
Naismith, J.H.5
White, M.F.6
-
66
-
-
84903202938
-
Cas6 specificity and CRISPR RNA loading in a complex CRISPR-Cas system
-
Sokolowski, R.D.; Graham, S.; White, M.F. Cas6 specificity and CRISPR RNA loading in a complex CRISPR-Cas system. Nucleic Acids Res. 2014, 42, 6532–6541.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 6532-6541
-
-
Sokolowski, R.D.1
Graham, S.2
White, M.F.3
-
67
-
-
84896773662
-
A complex of Cas proteins 5, 6, and 7 is required for the biogenesis and stability of clustered regularly interspaced short palindromic repeats (Crispr)-derived rnas (crrnas) in Haloferax volcanii
-
Brendel, J.; Stoll, B.; Lange, S.J.; Sharma, K.; Lenz, C.; Stachler, A.E.; Maier, L.K.; Rihter, H.; Schmitz, R.A.; Randau, L, et al. A complex of Cas proteins 5, 6, and 7 is required for the biogenesis and stability of clustered regularly interspaced short palindromic repeats (crispr)-derived rnas (crrnas) in Haloferax volcanii. J. Biol. Chem. 2014, 289, 7164–7177.
-
(2014)
J. Biol. Chem
, vol.289
, pp. 7164-7177
-
-
Brendel, J.1
Stoll, B.2
Lange, S.J.3
Sharma, K.4
Lenz, C.5
Stachler, A.E.6
Maier, L.K.7
Rihter, H.8
Schmitz, R.A.9
Randau, L.10
-
68
-
-
12544256546
-
Divergent transcriptional and translational signals in Archaea
-
Torarinsson, E.; Klenk, H.-P.; Garrett, R.A. Divergent transcriptional and translational signals in Archaea. Environ. Microbiol. 2005, 7, 47–54.
-
(2005)
Environ. Microbiol
, vol.7
, pp. 47-54
-
-
Torarinsson, E.1
Klenk, H.-P.2
Garrett, R.A.3
-
69
-
-
74949137952
-
A single-base resolution map of an archaeal transcriptome
-
Wurtzel, O.; Sapra, R.; Chen, F.; Zhu, Y.W.; Simmons, B.A.; Sorek, R. A single-base resolution map of an archaeal transcriptome. Genome Res. 2010, 20, 133–141.
-
(2010)
Genome Res
, vol.20
, pp. 133-141
-
-
Wurtzel, O.1
Sapra, R.2
Chen, F.3
Zhu, Y.W.4
Simmons, B.A.5
Sorek, R.6
-
70
-
-
84859294085
-
Modulation of CRISPR locus transcription by the repeat-binding protein Cbp1 in Sulfolobus
-
Deng, L.; Kenchappa, C.S.; Peng, X.; She, Q.; Garrett, R.A. Modulation of CRISPR locus transcription by the repeat-binding protein Cbp1 in Sulfolobus. Nucleic Acids Res. 2012, 40, 2470–2480.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 2470-2480
-
-
Deng, L.1
Kenchappa, C.S.2
Peng, X.3
She, Q.4
Garrett, R.A.5
-
71
-
-
84890564123
-
A novel single-tailed fusiform Sulfolobus virus STSV2 infecting model Sulfolobus species
-
Erdmann, S.; Chen, B.; Huang, X.; Deng, L.; Liu, C.; Shah, S.A.; Le Moine Bauer, S.; Sobrino, C-L.; Wang, H.; Wei, Y et al. A novel single-tailed fusiform Sulfolobus virus STSV2 infecting model Sulfolobus species. Extremophiles 2014, 18, 51–60.
-
(2014)
Extremophiles
, vol.18
, pp. 51-60
-
-
Erdmann, S.1
Chen, B.2
Huang, X.3
Deng, L.4
Liu, C.5
Shah, S.A.6
Le Moine Bauer, S.7
Sobrino, C.-L.8
Wang, H.9
Wei, Y.10
-
72
-
-
84896738064
-
Inter-viral conflicts that exploit host CRISPR immune systems of Sulfolobus
-
Erdmann, S.; Le Moine Bauer, S.; Garrett, R.A. Inter-viral conflicts that exploit host CRISPR immune systems of Sulfolobus. Mol. Microbiol. 2014, 91, 900–917.
-
(2014)
Mol. Microbiol
, vol.91
, pp. 900-917
-
-
Erdmann, S.1
Le Moine Bauer, S.2
Garrett, R.A.3
-
73
-
-
59749094861
-
Homologous recombination in Sulfolobus acidocaldarius: Genetic assays and functional properties
-
Grogan, D.W. Homologous recombination in Sulfolobus acidocaldarius: Genetic assays and functional properties. Biochem. Soc. Trans. 2009, 37, 88–91.
-
(2009)
Biochem. Soc. Trans
, vol.37
, pp. 88-91
-
-
Grogan, D.W.1
-
74
-
-
77958590947
-
CRISPR associated diversity within a population of Sulfolobus islandicus
-
Held, N.L.; Herrera, A.; Cadillo-Quiroz, H.; Whitaker, R.J. CRISPR associated diversity within a population of Sulfolobus islandicus. PLoS One 2010, 5, doi:10.1371/journal.pone.0012988.
-
(2010)
Plos One
, pp. 5
-
-
Held, N.L.1
Herrera, A.2
Cadillo-Quiroz, H.3
Whitaker, R.J.4
-
75
-
-
84866023604
-
Selective and hyperactive uptake of foreign DNA by adaptive immune systems of an archaeon via two distinct mechanisms
-
Erdmann, S.; Garrett, R.A. Selective and hyperactive uptake of foreign DNA by adaptive immune systems of an archaeon via two distinct mechanisms. Mol. Microbiol. 2012, 85, 1044–1056.
-
(2012)
Mol. Microbiol
, vol.85
, pp. 1044-1056
-
-
Erdmann, S.1
Garrett, R.A.2
-
76
-
-
84887891225
-
SMV1 virus-induced CRISPR spacer acquisition from the conjugative plasmid pMGB1 in Sulfolobus solfataricus P2. Biochem. Trans
-
Erdmann, S.; Shah, S.A.; Garrett, R.A. SMV1 virus-induced CRISPR spacer acquisition from the conjugative plasmid pMGB1 in Sulfolobus solfataricus P2. Biochem. Trans. Soc. 2013, 41, 1449–1458.
-
(2013)
Soc
, vol.41
, pp. 1449-1458
-
-
Erdmann, S.1
Shah, S.A.2
Garrett, R.A.3
-
77
-
-
77955085897
-
Gene regulation or autoimmunity?
-
Stern, A.; Keren, L.; Wurtzel, O.; Amitai, G.; Sorek, R. Self-targeting by CRISPR: Gene regulation or autoimmunity? Trends Genet. 2010, 26, 335–340.
-
(2010)
Trends Genet
, vol.26
, pp. 335-340
-
-
Stern, A.1
Keren, L.2
Wurtzel, O.3
Amitai, G.4
Sorek, R.5
Self-Targeting By, C.6
-
78
-
-
78650244167
-
Dynamic properties of the Sulfolobus CRISPR/Cas and CRISPR/Cmr systems when challenged with vector-borne viral and plasmid genes and protospacers
-
Gudbergsdottir, S.; Deng, L.; Chen, Z.; Jensen, J.V.K.; Jensen, L.R.; She, Q.; Garrett, R.A. Dynamic properties of the Sulfolobus CRISPR/Cas and CRISPR/Cmr systems when challenged with vector-borne viral and plasmid genes and protospacers. Mol. Microbiol. 2011, 79, 35–49.
-
(2011)
Mol. Microbiol
, vol.79
, pp. 35-49
-
-
Gudbergsdottir, S.1
Deng, L.2
Chen, Z.3
Jensen, J.4
Jensen, L.R.5
She, Q.6
Garrett, R.A.7
-
79
-
-
0037050279
-
Mobile elements in archaeal genomes
-
Brügger, K.; Redder, P.; She, Q.; Confalonieri, F.; Zivanovic, Y.; Garrett, R.A. Mobile elements in archaeal genomes. FEMS Microbiol. Lett. 2002, 206, 131–141.
-
(2002)
FEMS Microbiol. Lett
, vol.206
, pp. 131-141
-
-
Brügger, K.1
Redder, P.2
She, Q.3
Confalonieri, F.4
Zivanovic, Y.5
Garrett, R.A.6
-
80
-
-
2342462305
-
Shuffling of Sulfolobus genomes by autonomous and non-autonomous mobile elements
-
Brügger, K.; Torarinsson, E.; Chen, L.; Garrett, R.A. Shuffling of Sulfolobus genomes by autonomous and non-autonomous mobile elements. Biochem. Soc. Trans. 2004, 32, 179–183.
-
(2004)
Biochem. Soc. Trans
, vol.32
, pp. 179-183
-
-
Brügger, K.1
Torarinsson, E.2
Chen, L.3
Garrett, R.A.4
-
81
-
-
0035830483
-
Non-autonomous Mutations and rearrangements in the genome of Sulfolobus solfataricus P2mobile elements in the crenarchaeon Sulfolobus solfataricus
-
Redder, P.; She, Q.; Garrett, R.A. Non-autonomous Mutations and rearrangements in the genome of Sulfolobus solfataricus P2mobile elements in the crenarchaeon Sulfolobus solfataricus. J. Mol. Biol. 2001, 306, 1–6.
-
(2001)
J. Mol. Biol
, vol.306
, pp. 1-6
-
-
Redder, P.1
She, Q.2
Garrett, R.A.3
-
83
-
-
78651083184
-
A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair
-
Babu, M.; Beloglazova, N.; Flick, R.; Graham, C.; Skarina, T.; Nocek, B.; Gagarinova, A.; Pogoutse, O.; Brown, G, et al. A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair. Mol. Microbiol. 2011, 79, 484–502.
-
(2011)
Mol. Microbiol
, vol.79
, pp. 484-502
-
-
Babu, M.1
Beloglazova, N.2
Flick, R.3
Graham, C.4
Skarina, T.5
Nocek, B.6
Gagarinova, A.7
Pogoutse, O.8
Brown, G.9
-
84
-
-
84874619358
-
Strong bias in the bacterial CRISPR elements that confer immunity to phage
-
Paez-Espino, D.; Morovic, W.; Sun, C.L.; Thomas, B.C.; Ueda, K.; Stahl, B.; Barrangou, R.; Banfield, J.F. Strong bias in the bacterial CRISPR elements that confer immunity to phage. Nat. Commun. 2013, 4, doi:10.1038/ncomms2440.
-
(2013)
Nat. Commun
, pp. 4
-
-
Paez-Espino, D.1
Morovic, W.2
Sun, C.L.3
Thomas, B.C.4
Ueda, K.5
Stahl, B.6
Barrangou, R.7
Banfield, J.F.8
-
85
-
-
84861639567
-
Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli
-
Yosef, I.; Goren, M.G.; Qimron, U. Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli. Nucleic Acids Res. 2012, 40, 5569–5576.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 5569-5576
-
-
Yosef, I.1
Goren, M.G.2
Qimron, U.3
-
86
-
-
84879032247
-
CRISPR-spacer integration reporter plasmids reveal distinct genuine acquisition specificities among CRISPR-Cas I-E variants of Escherichia coli
-
Díez-Villaseñor, C.; Guzmán, N.M.; Almendros, C.; García-Martínez, J.; Mojica, F.J.M. CRISPR-spacer integration reporter plasmids reveal distinct genuine acquisition specificities among CRISPR-Cas I-E variants of Escherichia coli. RNA Biol. 2013, 10, 792–802.
-
(2013)
RNA Biol
, vol.10
, pp. 792-802
-
-
Díez-Villaseñor, C.1
Guzmán, N.M.2
Almendros, C.3
García-Martínez, J.4
Mojica, F.5
-
87
-
-
66649087973
-
Biogeography of the Sulfolobus islandicus pan-genome
-
Reno, M.L.; Held, N.L.; Fields, C.J.; Burke, P.V.; Whitaker, R.J. Biogeography of the Sulfolobus islandicus pan-genome. Proc. Natl. Acad. Sci. USA 2009, 106, 8605–8610.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 8605-8610
-
-
Reno, M.L.1
Held, N.L.2
Fields, C.J.3
Burke, P.V.4
Whitaker, R.J.5
-
88
-
-
84864864464
-
Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system
-
Datsenko, K.A.; Pougach, K.; Tikhonov, A.; Wanner, B.L.; Severinov, K.; Semenova, E. Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system. Nat. Commun. 2012, 3, doi:10.1038/ncomms1937.
-
(2012)
Nat. Commun
, pp. 3
-
-
Datsenko, K.A.1
Pougach, K.2
Tikhonov, A.3
Wanner, B.L.4
Severinov, K.5
Semenova, E.6
-
89
-
-
84860433123
-
CRISPR interference directs strand specific spacer acquisition
-
Swarts, D.C.; Mosterd, C.; van Passel, M.W.; Brouns, S.J.J. CRISPR interference directs strand specific spacer acquisition. PLoS One 2012, 7, doi:10.1371/journal.pone.0035888.
-
(2012)
Plos One
, pp. 7
-
-
Swarts, D.C.1
Mosterd, C.2
Van Passel, M.W.3
Brouns, S.4
-
90
-
-
84895823059
-
Adaptation of the Haloarcula hispanica CRISPR-Cas system to a purified virus strictly requires a priming process
-
Li, M.; Wang, R.; Zhao, D.; Xiang, H. Adaptation of the Haloarcula hispanica CRISPR-Cas system to a purified virus strictly requires a priming process. Nucleic Acids Res. 2014, 42, 2483–2492.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 2483-2492
-
-
Li, M.1
Wang, R.2
Zhao, D.3
Xiang, H.4
-
91
-
-
84880586986
-
Lavigne, R.; et al. Massive activation of archaeal defense genes during viral infection
-
Quax, T.E.F.; Voet, M.; Sismeiro, O.; Dillies, M.-A.; Jagla, B.; Coppée, J.-Y.; Sezonov, G.; Forterre, P.; van der Oost, J.; Lavigne, R.; et al. Massive activation of archaeal defense genes during viral infection. J. Virol. 2013, 87, 8419–8428.
-
(2013)
J. Virol
, vol.87
, pp. 8419-8428
-
-
Quax, T.1
Voet, M.2
Sismeiro, O.3
Dillies, M.-A.4
Jagla, B.5
Coppée, J.-Y.6
Sezonov, G.7
Forterre, P.8
Van Der Oost, J.9
-
92
-
-
84856792673
-
Essential features and rational design of CRISPR RNAs that function with the Cas RAMP module complex to cleave RNAs. Mol
-
Hale, C.R.; Majumdar, S.; Elmore, J.; Pfister, N.; Compton, M.; Olson, S.; Resch, A.M.; Glover, C.V.C., III; Graveley, B.R.; Terns, R.M et al. Essential features and rational design of CRISPR RNAs that function with the Cas RAMP module complex to cleave RNAs. Mol. Cell 2012, 45, 292–302.
-
(2012)
Cell
, vol.45
, pp. 292-302
-
-
Hale, C.R.1
Majumdar, S.2
Elmore, J.3
Pfister, N.4
Compton, M.5
Olson, S.6
Resch, A.M.7
Glover, C.8
Graveley, B.R.9
Terns, R.M.10
-
93
-
-
34047118522
-
CRISPR provides acquired resistance against viruses in prokaryotes
-
Barrangou, R.; Fremaux, C.; Deveau, H.; Richards, M.; Boyaval, P.; Moineau, S.; Romero, D.A.; Horvath, P. CRISPR provides acquired resistance against viruses in prokaryotes. Science 2007, 315, 1709–1712.
-
(2007)
Science
, vol.315
, pp. 1709-1712
-
-
Barrangou, R.1
Fremaux, C.2
Deveau, H.3
Richards, M.4
Boyaval, P.5
Moineau, S.6
Romero, D.A.7
Horvath, P.8
-
94
-
-
38949123143
-
Phage response to CRISPR-encoded resistance in Streptococcus thermophilus
-
Deveau, H.; Barrangou, R.; Garneau, J.E.; Labonté, J.; Fremaux, C.; Boyaval, P.; Romero, D.A.; Horvath, P.; Moineau, S. Phage response to CRISPR-encoded resistance in Streptococcus thermophilus. J. Bacteriol. 2008, 190, 1390–1400.
-
(2008)
J. Bacteriol
, vol.190
, pp. 1390-1400
-
-
Deveau, H.1
Barrangou, R.2
Garneau, J.E.3
Labonté, J.4
Fremaux, C.5
Boyaval, P.6
Romero, D.A.7
Horvath, P.8
Moineau, S.9
-
95
-
-
38949214103
-
Activity, and evolution of CRISPR loci in Streptococcus thermophilus
-
Horvath, P.; Romero, D.A.; Coûté-Monvoisin, A.C.; Richards, M.; Deveau, H.; Moineau, S.; Boyaval, P.; Fremaux, C.; Barrangou, R. Diversity, activity, and evolution of CRISPR loci in Streptococcus thermophilus. J. Bacteriol. 2008, 190, 1401–1412.
-
(2008)
J. Bacteriol
, vol.190
, pp. 1401-1412
-
-
Horvath, P.1
Romero, D.A.2
Coûté-Monvoisin, A.C.3
Richards, M.4
Deveau, H.5
Moineau, S.6
Boyaval, P.7
Fremaux, C.8
Barrangou, R.D.9
-
96
-
-
84890358323
-
Unexpectedly broad target recognition of the CRISPR-mediated virus defence system in the archaeon Sulfolobus solfataricus
-
Manica, A.; Zebec, Z.; Steinkellner, J.; Schleper, C. Unexpectedly broad target recognition of the CRISPR-mediated virus defence system in the archaeon Sulfolobus solfataricus. Nucleic Acids Res. 2013, 41, 10509–10517.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 10509-10517
-
-
Manica, A.1
Zebec, Z.2
Steinkellner, J.3
Schleper, C.4
-
97
-
-
79959963663
-
Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence
-
Semenova, E.; Jore, M.M.; Datsenko, K.A.; Semenova, A.; Westra, E.R.; Wanner, B.; van der Oost, J.; Brouns, S.J.; Severinov, K. Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence. Proc. Natl. Acad. Sci. USA 2011, 108, 10098–10103.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 10098-10103
-
-
Semenova, E.1
Jore, M.M.2
Datsenko, K.A.3
Semenova, A.4
Westra, E.R.5
Wanner, B.6
Van Der Oost, J.7
Brouns, S.J.8
Severinov, K.9
-
99
-
-
84885336337
-
Structure of the CRISPR interference complex CSM reveals key similarities with cascade
-
Rouillon, C.; Zhou, M.; Zhang, J.; Politis, A.; Beilsten-Edmands, V.; Cannone, G.; Graham, S.; Robinson, C.V.; Spagnolo, L.; White, M.F. Structure of the CRISPR interference complex CSM reveals key similarities with cascade. Mol. Cell 2013, 52, 124–134.
-
(2013)
Mol. Cell
, vol.52
, pp. 124-134
-
-
Rouillon, C.1
Zhou, M.2
Zhang, J.3
Politis, A.4
Beilsten-Edmands, V.5
Cannone, G.6
Graham, S.7
Robinson, C.V.8
Spagnolo, L.9
White, M.F.10
-
100
-
-
0034602365
-
Evolution of the family of pRN plasmids and their integrase-mediated insertion into the chromosome of the Crenarchaeon Sulfolobus solfataricus
-
Peng, X.; Holz, I.; Zillig, W.; Garrett, R.A.; She, Q. Evolution of the family of pRN plasmids and their integrase-mediated insertion into the chromosome of the Crenarchaeon Sulfolobus solfataricus. J. Mol. Biol. 2000, 303, 449–454.
-
(2000)
J. Mol. Biol
, vol.303
, pp. 449-454
-
-
Peng, X.1
Holz, I.2
Zillig, W.3
Garrett, R.A.4
She, Q.5
-
101
-
-
84866951828
-
An archaeal immune system can detect multiple protospacer adjacent motifs (PAMs) to target invader DNA
-
Fischer, S.; Maier, L.K.; Stoll, B.; Brendel, J.; Fischer, E.; Pfeiffer, F.; Dyall-Smith, M.; Marchfelder, A. An archaeal immune system can detect multiple protospacer adjacent motifs (PAMs) to target invader DNA. J. Biol. Chem. 2012, 287, 33351–33363.
-
(2012)
J. Biol. Chem
, vol.287
, pp. 33351-33363
-
-
Fischer, S.1
Maier, L.K.2
Stoll, B.3
Brendel, J.4
Fischer, E.5
Pfeiffer, F.6
Dyall-Smith, M.7
Marchfelder, A.8
-
102
-
-
84899810698
-
In vitro assembly and activity of an archaeal CRISPR-Cas type I-A Cascade interference complex
-
Plagens, A.; Tripp, V.; Daume, M.; Sharma, K.; Klingl, A.; Hrle, A.; Conti, E.; Urlaub, H.; Randau, L. In vitro assembly and activity of an archaeal CRISPR-Cas type I-A Cascade interference complex. Nucleic Acids Res. 2014, 42, 5125–5138.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 5125-5138
-
-
Plagens, A.1
Tripp, V.2
Daume, M.3
Sharma, K.4
Klingl, A.5
Hrle, A.6
Conti, E.7
Urlaub, H.8
Randau, L.9
-
103
-
-
84912096635
-
Programmable RNA shredding by the Type III-A CRISPR-Cas system of Streptococcus thermophilus
-
Tamulaitis, G.; Kazlauskiene, M.; Manakova, E.; Venclovas, C.; Nwokeoji, A.O.; Dickman, M.J.; Horvath, P.; Siksnys, V. Programmable RNA shredding by the Type III-A CRISPR-Cas system of Streptococcus thermophilus. Mol. Cell 2014, 56, 506–517.
-
(2014)
Mol. Cell
, vol.56
, pp. 506-517
-
-
Tamulaitis, G.1
Kazlauskiene, M.2
Manakova, E.3
Venclovas, C.4
Nwokeoji, A.O.5
Dickman, M.J.6
Horvath, P.7
Siksnys, V.8
-
104
-
-
84878168552
-
CRISPR-Cas Evolution of an RNA-based adaptive immunity system in prokaryotes
-
Koonin, E.V.; Makarova, K.S. CRISPR-Cas Evolution of an RNA-based adaptive immunity system in prokaryotes. RNA Biol. 2013, 10, 679–686.
-
(2013)
RNA Biol
, vol.10
, pp. 679-686
-
-
Koonin, E.V.1
Makarova, K.S.2
-
105
-
-
80053169737
-
Structures of the RNA-guided surveillance complex from a bacterial immune system
-
Wiedenheft, B.; Lander, G.C.; Zhou, K.; Jore, M.M.; Brouns, S.J.; van der Oost, J.; Doudna, J.A.; Nogales, E. Structures of the RNA-guided surveillance complex from a bacterial immune system. Nature 2011, 477, 486–489.
-
(2011)
Nature
, vol.477
, pp. 486-489
-
-
Wiedenheft, B.1
Lander, G.C.2
Zhou, K.3
Jore, M.M.4
Brouns, S.J.5
Van Der Oost, J.6
Doudna, J.A.7
Nogales, E.8
-
106
-
-
84885355637
-
Structure of an RNA silencing complex of the CRISPR-Cas immune system
-
Spilman, M.; Cocozaki, A.; Hale, C.; Shao, Y.; Ramia, N.; Terns, R.; Terns, M.; Li, H.; Stagg, S. Structure of an RNA silencing complex of the CRISPR-Cas immune system. Mol. Cell 2013, 52, 146–152.
-
(2013)
Mol. Cell
, vol.52
, pp. 146-152
-
-
Spilman, M.1
Cocozaki, A.2
Hale, C.3
Shao, Y.4
Ramia, N.5
Terns, R.6
Terns, M.7
Li, H.8
Stagg, S.9
-
107
-
-
84884765703
-
Ruler protein in a complex for antiviral defense determines the length of small interfering CRISPR RNAs
-
Hatoum-Aslan, A.; Samai, P.; Maniv, I.; Jiang, W.; Marraffini, L.A. A ruler protein in a complex for antiviral defense determines the length of small interfering CRISPR RNAs. J. Biol. Chem. 2013, 288, 27888–27897.
-
(2013)
J. Biol. Chem
, vol.288
, pp. 27888-27897
-
-
Hatoum-Aslan, A.1
Samai, P.2
Maniv, I.3
Jiang, W.4
Marraffini, L.5
-
108
-
-
79251598240
-
The structure of the CRISPR-associated protein Csa3 provides insight into the regulation of the CRISPR/Cas system
-
Lintner, N.G.; Frankel, K.A.; Tsutakawa, S.E.; Alsbury, D.L.; Copié, V.; Young, M.J.; Tainer, J.A.; Lawrence, C.M. The structure of the CRISPR-associated protein Csa3 provides insight into the regulation of the CRISPR/Cas system. J. Mol. Biol. 2011, 405, 939–955.
-
(2011)
J. Mol. Biol
, vol.405
, pp. 939-955
-
-
Lintner, N.G.1
Frankel, K.A.2
Tsutakawa, S.E.3
Alsbury, D.L.4
Copié, V.5
Young, M.J.6
Tainer, J.A.7
Lawrence, C.M.8
-
109
-
-
84941035583
-
Transcriptional regulator-mediated activation of adaptation genes triggers CRISPR de novo spacer acquisition
-
Liu, T.; Li, Y.; Wang, X.; Ye, Q.; Li, H.; Liang, Y.; She, Q.; Peng, N. Transcriptional regulator-mediated activation of adaptation genes triggers CRISPR de novo spacer acquisition. Nucleic Acids Res. 2015, 43, 1044–1055.
-
(2015)
Nucleic Acids Res
, vol.43
, pp. 1044-1055
-
-
Liu, T.1
Li, Y.2
Wang, X.3
Ye, Q.4
Li, H.5
Liang, Y.6
She, Q.7
Peng, N.8
-
110
-
-
84924385721
-
A transcriptome study of de novo spacer acquisition from the STSV2 virus by CRISPR loci of Sulfolobus islandicus REY15A
-
León-Sobrino, C.; Kot, W.P.; Garrett, R.A. A transcriptome study of de novo spacer acquisition from the STSV2 virus by CRISPR loci of Sulfolobus islandicus REY15A. Manuscript under preparation.
-
Manuscript under Preparation
-
-
León-Sobrino, C.1
Kot, W.P.2
Garrett, R.A.3
-
111
-
-
77949398275
-
Identification and characterization of E. Coli CRISPR-cas promoters and their silencing by H-NS
-
Pul, U.; Wurm, R.; Arslan, Z.; Geissen, R.; Hofmann, N.; Wagner, R. Identification and characterization of E. coli CRISPR-cas promoters and their silencing by H-NS. Mol. Microbiol. 2010, 75, 1495–1512.
-
(2010)
Mol. Microbiol
, vol.75
, pp. 1495-1512
-
-
Pul, U.1
Wurm, R.2
Arslan, Z.3
Geissen, R.4
Hofmann, N.5
Wagner, R.6
-
112
-
-
77956621546
-
H-NS-mediated repression of CRISPR-based immunity in Escherichia coli K12 can be relieved by the transcription activator LeuO. Mol
-
Westra, E.R.; Pul, U.; Heidrich, N.; Jore, M.M.; Lundgren, M.; Stratmann, T.; Wurm, R.; Raine, A.; Mescher, M.; Mastop, M et al. H-NS-mediated repression of CRISPR-based immunity in Escherichia coli K12 can be relieved by the transcription activator LeuO. Mol. Microbiol. 2010, 77, 1380–1393.
-
(2010)
Microbiol
, vol.77
, pp. 1380-1393
-
-
Westra, E.R.1
Pul, U.2
Heidrich, N.3
Jore, M.M.4
Lundgren, M.5
Stratmann, T.6
Wurm, R.7
Raine, A.8
Mescher, M.9
Mastop, M.10
-
113
-
-
84874161995
-
Adaptation and modification of three CRISPR loci in two closely related cyanobacteria
-
Hein, S.; Scholz, I.; Voss, B.; Hess, W.R. Adaptation and modification of three CRISPR loci in two closely related cyanobacteria. RNA Biol. 2013, 10, 852–864.
-
(2013)
RNA Biol
, vol.10
, pp. 852-864
-
-
Hein, S.1
Scholz, I.2
Voss, B.3
Hess, W.R.4
-
114
-
-
6344269355
-
Multiple variants of the archaeal DNA rudivirus SIRV1 in a single host and a novel mechanism of genome variation. Mol
-
Peng, X.; Kessler, A.; Phan, H.; Garrett, R.A.; Prangishvili, D. Multiple variants of the archaeal DNA rudivirus SIRV1 in a single host and a novel mechanism of genome variation. Mol. Microbiol. 2004, 54, 366–375.
-
(2004)
Microbiol
, vol.54
, pp. 366-375
-
-
Peng, X.1
Kessler, A.2
Phan, H.3
Garrett, R.A.4
Prangishvili, D.5
-
115
-
-
53849141479
-
SRV, a new rudiviral isolate from Stygioglobus and the interplay of crenarchaeal rudiviruses with the host viral-defence CRISPR system
-
Vestergaard, G.; Shah, S.A.; Bize, A.; Reitberger, W.; Reuter, M.; Phan, H.; Briegel, A.; Rachel, R.; Garrett, R.A.; Prangishvili, D. SRV, a new rudiviral isolate from Stygioglobus and the interplay of crenarchaeal rudiviruses with the host viral-defence CRISPR system. J. Bacteriol. 2008, 190, 6837–6845.
-
(2008)
J. Bacteriol
, vol.190
, pp. 6837-6845
-
-
Vestergaard, G.1
Shah, S.A.2
Bize, A.3
Reitberger, W.4
Reuter, M.5
Phan, H.6
Briegel, A.7
Rachel, R.8
Garrett, R.A.9
Prangishvili, D.10
-
116
-
-
78249248037
-
Metagenomic analyses of novel viruses, plasmids, and their variants, from an environmental sample of hyperthermophilic neutrophiles cultured in a bioreactor
-
Garrett, R.A.; Prangishvili, D.; Shah, S.A.; Reuter, M.; Stetter, K.; Peng, X. Metagenomic analyses of novel viruses, plasmids, and their variants, from an environmental sample of hyperthermophilic neutrophiles cultured in a bioreactor. Environ. Microbiol. 2010, 12, 2918–2930.
-
(2010)
Environ. Microbiol
, vol.12
, pp. 2918-2930
-
-
Garrett, R.A.1
Prangishvili, D.2
Shah, S.A.3
Reuter, M.4
Stetter, K.5
Peng, X.6
-
117
-
-
37349071010
-
Structure of the Acidianus filamentous virus 3 and comparative genomics of related archaeal lipothrixviruses
-
Vestergaard, G.; Aramayo, R.; Basta, T.; Häring, M.; Peng, X.; Brügger, K.; Chen, L.; Rachel, R.; Boisset, N.; Garrett, R.A, et al. Structure of the Acidianus filamentous virus 3 and comparative genomics of related archaeal lipothrixviruses. J. Virol. 2008, 82, 371–381.
-
(2008)
J. Virol
, vol.82
, pp. 371-381
-
-
Vestergaard, G.1
Aramayo, R.2
Basta, T.3
Häring, M.4
Peng, X.5
Brügger, K.6
Chen, L.7
Rachel, R.8
Boisset, N.9
Garrett, R.A.10
-
118
-
-
70350444919
-
Four newly isolated fuselloviruses from extreme geothermal environments reveal unusual morphologies and a possible interviral recombination mechanism. Environ
-
Redder, P.; Peng, X.; Brügger, K.; Shah, S.A.; Roesch, F.; Greve, B.; She, Q.; Schleper, C.; Forterre, P.; Garrett, R.A et al. Four newly isolated fuselloviruses from extreme geothermal environments reveal unusual morphologies and a possible interviral recombination mechanism. Environ. Microbiol. 2009, 11, 2849–2862.
-
(2009)
Microbiol
, vol.11
, pp. 2849-2862
-
-
Redder, P.1
Peng, X.2
Brügger, K.3
Shah, S.A.4
Roesch, F.5
Greve, B.6
She, Q.7
Schleper, C.8
Forterre, P.9
Garrett, R.A.10
-
119
-
-
84872607723
-
Bacteriophage genes that inactivate the CRISPR/Cas bacterial immune system
-
Bondy-Denomy, J.; Pawluk, A.; Maxwell, K.L.; Davidson, A.R. Bacteriophage genes that inactivate the CRISPR/Cas bacterial immune system. Nature 2012, 493, 429–432.
-
(2012)
Nature
, vol.493
, pp. 429-432
-
-
Bondy-Denomy, J.1
Pawluk, A.2
Maxwell, K.L.3
Davidson, A.R.4
-
120
-
-
84899866053
-
New group of phage anti-CRISPR genes inhibits the type I-E CRISPR-Cas system of Pseudomonas aeruginosa
-
Pawluk, A.; Bondy-Denomy, J.; Cheung, V.H.; Maxwell, K.L.; Davidson, A.R. A new group of phage anti-CRISPR genes inhibits the type I-E CRISPR-Cas system of Pseudomonas aeruginosa. MBio 2014, 5, doi:10.1128/mBio.00896-14.
-
(2014)
Mbio
, pp. 5
-
-
Pawluk, A.1
Bondy-Denomy, J.2
Cheung, V.H.3
Maxwell, K.L.4
Davidson, A.R.5
-
121
-
-
0027502720
-
SSV1-encoded site-specific recombination system in Sulfolobus shibatae
-
Muskhelishvili, G.; Palm, P.; Zillig, W. SSV1-encoded site-specific recombination system in Sulfolobus shibatae. Mol. Gen. Genet. 1993, 237, 334–342.
-
(1993)
Mol. Gen. Genet
, vol.237
, pp. 334-342
-
-
Muskhelishvili, G.1
Palm, P.2
Zillig, W.3
-
122
-
-
2342464252
-
Archaeal integrases and mechanisms of gene capture. Biochem
-
She, Q.; Shen, B.; Chen, L. Archaeal integrases and mechanisms of gene capture. Biochem. Soc. Trans. 2004, 32, 222–226.
-
(2004)
Soc. Trans
, vol.32
, pp. 222-226
-
-
She, Q.1
Shen, B.2
Chen, L.3
-
123
-
-
0035945570
-
Genome evolution: Gene capture events in archaeal chromosomes
-
She, Q.; Peng, X.; Zillig, W.; Garrett, R.A. Genome evolution: Gene capture events in archaeal chromosomes. Nature 2001, 409, doi:10.1038/35054138.
-
(2001)
Nature
, pp. 409
-
-
She, Q.1
Peng, X.2
Zillig, W.3
Garrett, R.A.4
-
124
-
-
79959371100
-
Genomic studies of Acidianus hospitalis W1 a host for studying crenarchaeal virus and plasmid life cycles
-
You, X.Y.; Liu, C.; Wang, S.Y.; Jiang, C.Y.; Shah, S.A; Prangishvili, D.; She, Q.; Liu, S.J.; Garrett, R.A. Genomic studies of Acidianus hospitalis W1 a host for studying crenarchaeal virus and plasmid life cycles. Extremophiles 2011, 15, 487–497.
-
(2011)
Extremophiles
, vol.15
, pp. 487-497
-
-
You, X.Y.1
Liu, C.2
Wang, S.Y.3
Jiang, C.Y.4
Shah, S.A.5
Prangishvili, D.6
She, Q.7
Liu, S.J.8
Garrett, R.A.9
-
125
-
-
33745170394
-
Structural and genomic properties of the hyperthermophilic archaeal virus ATV with an extracellular stage of the reproductive cycle
-
Prangishvili, D.; Vestergaard, G.; Häring, M.; Aramayo, R.; Basta, T.; Rachel, R.; Garrett, R.A. Structural and genomic properties of the hyperthermophilic archaeal virus ATV with an extracellular stage of the reproductive cycle. J. Mol. Biol. 2006, 359, 1203–1216.
-
(2006)
J. Mol. Biol
, vol.359
, pp. 1203-1216
-
-
Prangishvili, D.1
Vestergaard, G.2
Häring, M.3
Aramayo, R.4
Basta, T.5
Rachel, R.6
Garrett, R.A.7
-
126
-
-
43249088365
-
Transcriptome analysis of infection of the archaeon Sulfolobus solfataricus with Sulfolobus turreted icosahedral virus
-
Ortmann, A.C.; Brumfield, S.K.; Walther, J.; McInnerney, K.; Brouns, S.J.; van de Werken, H.J.; Bothner, B.; Douglas, T.; van der Oost, J.; Young, M.J. Transcriptome analysis of infection of the archaeon Sulfolobus solfataricus with Sulfolobus turreted icosahedral virus. J. Virol. 2008, 82, 4874–4883.
-
(2008)
J. Virol
, vol.82
, pp. 4874-4883
-
-
Ortmann, A.C.1
Brumfield, S.K.2
Walther, J.3
McInnerney, K.4
Brouns, S.J.5
Van De Werken, H.J.6
Bothner, B.7
Douglas, T.8
Van Der Oost, J.9
Young, M.J.10
-
127
-
-
84879012157
-
Novel insights into gene regulation of the rudivirus SIRV2 infecting Sulfolobus cells
-
Okutan, E.; Deng, L.; Mirlashari, S.; Uldahl, K.; Halim, M.; Liu, C.; Garrett, R.A.; She, Q.; Peng, X. Novel insights into gene regulation of the rudivirus SIRV2 infecting Sulfolobus cells. RNA Biol. 2013, 10, 875–885.
-
(2013)
RNA Biol
, vol.10
, pp. 875-885
-
-
Okutan, E.1
Deng, L.2
Mirlashari, S.3
Uldahl, K.4
Halim, M.5
Liu, C.6
Garrett, R.A.7
She, Q.8
Peng, X.9
-
128
-
-
15944384666
-
The expanding world of small RNAs in the hyperthermophilic archaeon Sulfolobus solfataricus
-
Zago, M.A.; Dennis, P.P.; Omer, A.D. The expanding world of small RNAs in the hyperthermophilic archaeon Sulfolobus solfataricus. Mol. Microbiol. 2005, 55, 1812–1828.
-
(2005)
Mol. Microbiol
, vol.55
, pp. 1812-1828
-
-
Zago, M.A.1
Dennis, P.P.2
Omer, A.D.3
-
129
-
-
34248374277
-
A putative RNA-interference-based immune system in prokaryotes: Computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action
-
Makarova, K.S.; Grishin, N.V.; Shabalina, S.A.; Wolf, Y.I.; Koonin, E.V. A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action. Biol. Direct 2006, 1, doi:10.1186/1745-6150-1-7.
-
(2006)
Biol. Direct
, pp. 1
-
-
Makarova, K.S.1
Grishin, N.V.2
Shabalina, S.A.3
Wolf, Y.I.4
Koonin, E.V.5
-
130
-
-
84924428630
-
Archaeal type II toxin-antitoxins
-
Gerdes, K., Ed.; Springer: Berlin/Heidelberg, Germany
-
Shah, S.A.; Garrett, R.A. Archaeal type II toxin-antitoxins. In Prokaryotic Toxin-Antitoxins; Gerdes, K., Ed.; Springer: Berlin/Heidelberg, Germany, 2013; pp. 225–238.
-
(2013)
Prokaryotic Toxin-Antitoxins
, pp. 225-238
-
-
Shah, S.A.1
Garrett, R.A.2
-
131
-
-
84901047385
-
CARF and WYL domains: Ligand binding regulators of prokaryotic defense systems
-
Makarova, K.S.; Anantharaman, V.; Grishin, N.V.; Koonin, E.V.; Aravind, L. CARF and WYL domains: Ligand binding regulators of prokaryotic defense systems. Front. Genet. 2014, 5, doi:10.3389/fgene.2014.00102.
-
(2014)
Front. Genet
, pp. 5
-
-
Makarova, K.S.1
Anantharaman, V.2
Grishin, N.V.3
Koonin, E.V.4
Aravind, L.5
-
132
-
-
84908191370
-
First experimental evidence for the presence of a CRISPR toxin in Sulfolobus
-
He, F.; Chen, L.; Peng X. First experimental evidence for the presence of a CRISPR toxin in Sulfolobus. J. Mol. Biol. 2014, 426, 3683–3688.
-
(2014)
J. Mol. Biol
, vol.426
, pp. 3683-3688
-
-
He, F.1
Chen, L.2
Peng, X.3
-
133
-
-
0037385757
-
Genus-specific protein binding to the large clusters of DNA repeats (Short Regularly Spaced Repeats) present in Sulfolobus genomes
-
Peng, X.; Brügger, K.; Shen, B.; Chen, L.; She, Q.; Garrett, R.A. Genus-specific protein binding to the large clusters of DNA repeats (Short Regularly Spaced Repeats) present in Sulfolobus genomes. J. Bacteriol. 2003, 185, 2410–2417.
-
(2003)
J. Bacteriol
, vol.185
, pp. 2410-2417
-
-
Peng, X.1
Brügger, K.2
Shen, B.3
Chen, L.4
She, Q.5
Garrett, R.A.6
-
134
-
-
84876381639
-
Solution properties of the archaeal CRISPR DNA repeat-binding homeodomain protein Cbp2
-
Kenchappa, C.S.; Heidarsson, P.O.; Kragelund, B.B.; Garrett, R.A.; Poulsen, F.M. Solution properties of the archaeal CRISPR DNA repeat-binding homeodomain protein Cbp2. Nucleic Acids Res. 2013, 41, 3424–3435.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 3424-3435
-
-
Kenchappa, C.S.1
Heidarsson, P.O.2
Kragelund, B.B.3
Garrett, R.A.4
Poulsen, F.M.5
|