-
1
-
-
0037050279
-
Mobile elements in archaeal genomes
-
Brügger, K., Redder, P., She, Q., Confalonieri, F., Zivanovic, Y., & Garrett, R. A. (2002). Mobile elements in archaeal genomes. FEMS Microbiology Letters, 206, 131-141
-
(2002)
FEMS Microbiology Letters
, vol.206
, pp. 131-141
-
-
Brügger, K.1
Redder, P.2
She, Q.3
Confalonieri, F.4
Zivanovic, Y.5
Garrett, R.A.6
-
2
-
-
0038797797
-
Rele toxins from bacteria and archaea cleave mrnas on translating ribosomes which are rescued by tmrna
-
Christensen, S. K., & Gerdes, K. (2003). RelE toxins from bacteria and archaea cleave mRNAs on translating ribosomes which are rescued by tmRNA. Molecular Microbiology, 48, 1389-1400
-
(2003)
Molecular Microbiology
, vol.48
, pp. 1389-1400
-
-
Christensen, S.K.1
Gerdes, K.2
-
3
-
-
59749093980
-
Role of vapbc toxin-antitoxin loci in the thermal stress response of sulfolobus solfataricus
-
Cooper, C. R., Daugherty, A. J., Tachdjian, S., Blum, P. H., & Kelly, R. M. (2009). Role of vapBC toxin-antitoxin loci in the thermal stress response of Sulfolobus solfataricus. Biochemical Society Transactions, 37, 123-126
-
(2009)
Biochemical Society Transactions
, vol.37
, pp. 123-126
-
-
Cooper, C.R.1
Daugherty, A.J.2
Tachdjian, S.3
Blum, P.H.4
Kelly, R.M.5
-
4
-
-
82555168246
-
Crystal structure of vapbc toxin-antitoxin complex from shigella flexneri reveals a hetero-octameric dna-binding assembly
-
Dienemann, C., Bøggild, A., Winther, K. S., Gerdes, K., & Brodersen, D. (2011). Crystal structure of VapBC toxin-antitoxin complex from Shigella flexneri reveals a hetero-octameric DNA-binding assembly. Journal of Molecular Biology, 414, 713-722
-
(2011)
Journal of Molecular Biology
, vol.414
, pp. 713-722
-
-
Dienemann, C.1
Bøggild, A.2
Winther, K.S.3
Gerdes, K.4
Brodersen, D.5
-
5
-
-
80055082271
-
Accelerated profile hmm searches
-
Eddy, S. R. (2011). Accelerated profile HMM searches. PLoS Computational Biology, 7, 10
-
(2011)
PLoS Computational Biology
, vol.7
, pp. 10
-
-
Eddy, S.R.1
-
6
-
-
33947380527
-
Insertion sequence diversity in archaea
-
Filée, J., Siguier, P., & Chandler, M. (2007). Insertion sequence diversity in archaea. Microbiological and Molecular Biological Reviews, 71, 121-157
-
(2007)
Microbiological and Molecular Biological Reviews
, vol.71
, pp. 121-157
-
-
Filée, J.1
Siguier, P.2
Chandler, M.3
-
7
-
-
0037335662
-
Phylogenomics of type II DNA topoisomerases
-
Gadelle, D., Filee, J., Buhler, C., & Forterre, P. (2003). Phylogenomics of type II DNA topoisomerases. BioEssays, 25, 232-242
-
(2003)
BioEssays
, vol.25
, pp. 232-242
-
-
Gadelle, D.1
Filee, J.2
Buhler, C.3
Forterre, P.4
-
8
-
-
80755153697
-
Archaeal CRISPR-based immune systems: Exchangeable functional modules
-
Garrett, R. A., Vestergaard, G., & Shah, S. A. (2011). Archaeal CRISPR-based immune systems: exchangeable functional modules. Trends in Microbiology, 19, 549-556
-
(2011)
Trends in Microbiology
, vol.19
, pp. 549-556
-
-
Garrett, R.A.1
Vestergaard, G.2
Shah, S.A.3
-
9
-
-
0033976914
-
Toxin-antitoxin modules may regulate synthsis of macromolecules during nutritional stress
-
Gerdes, K. (2000). Toxin-antitoxin modules may regulate synthsis of macromolecules during nutritional stress. Journal of Bacteriology, 182, 561-572
-
(2000)
Journal of Bacteriology
, vol.182
, pp. 561-572
-
-
Gerdes, K.1
-
10
-
-
17844370503
-
Prokaryotic toxin-antitoxin stress response loci
-
Gerdes, K., Christensen, S. K., & Lobner-Olesen, A. (2005). Prokaryotic toxin-antitoxin stress response loci. Nature Reviews Microbiology, 3, 371-382
-
(2005)
Nature Reviews Microbiology
, vol.3
, pp. 371-382
-
-
Gerdes, K.1
Christensen, S.K.2
Lobner-Olesen, A.3
-
11
-
-
77957134043
-
The origin of eukaryotes and their relationship with the archaea: Are we at a phylogenomic impasse
-
Gribaldo, S., Poole, A. M., Daubin, V., Forterre, P., & Brochier-Armanet, C. (2010). The origin of eukaryotes and their relationship with the archaea: are we at a phylogenomic impasse? Nature Reviews Microbiology, 8, 743-752
-
(2010)
Nature Reviews Microbiology
, vol.8
, pp. 743-752
-
-
Gribaldo, S.1
Poole, A.M.2
Daubin, V.3
Forterre, P.4
Brochier-Armanet, C.5
-
12
-
-
79952803560
-
Genome analyses of icelandic strains of sulfolobus islandicus: Model organisms for genetic and virus-host interaction studies
-
Guo, L., Brügger, K., Liu, C., Shah, S. A., Zheng, H., Zhu, Y., et al. (2011). Genome analyses of Icelandic strains of Sulfolobus islandicus: Model organisms for genetic and virus-host interaction studies. Journal of Bacteriology, 193, 1672-1680
-
(2011)
Journal of Bacteriology
, vol.193
, pp. 1672-1680
-
-
Guo, L.1
Brügger, K.2
Liu, C.3
Shah, S.A.4
Zheng, H.5
Zhu, Y.6
-
13
-
-
60849121408
-
Hica of escherichia coli defines a novel family of translation-independent mrna transferases in bacteria and archaea
-
Jørgensen, M. G., Pandey, D. P., Jaskolska, M., & Gerdes, K. (2009). HicA of Escherichia coli defines a novel family of translation-independent mRNA transferases in bacteria and archaea. Journal of Bacteriology, 191, 1191-1199
-
(2009)
Journal of Bacteriology
, vol.191
, pp. 1191-1199
-
-
Jørgensen, M.G.1
Pandey, D.P.2
Jaskolska, M.3
Gerdes, K.4
-
14
-
-
33846641846
-
General characteristics and important model organisms
-
R. Cavicchioli (Ed.) USA: ASM press
-
Kletzin, A. (2007). General characteristics and important model organisms. In R. Cavicchioli (Ed.), Molecular and Cellular Biology (pp. 14-92). USA: ASM press
-
(2007)
Molecular and Cellular Biology
, pp. 14-92
-
-
Kletzin, A.1
-
15
-
-
33646726959
-
Genomics and the irreducible nature of eukaryotic cells
-
Kurland, C. G., Collins, L. J., & Penny, D. (2006). Genomics and the irreducible nature of eukaryotic cells. Science, 312, 1011-1014
-
(2006)
Science
, vol.312
, pp. 1011-1014
-
-
Kurland, C.G.1
Collins, L.J.2
Penny, D.3
-
16
-
-
79959303354
-
Vapc6, a ribonucleolytic toxin regulates thermophilicity in the crenarchaeote sulfolobus solfataricus
-
Maezato, Y., Daugherty, A., Dana, K., Soo, E., Cooper, C., Tachdjian S., et al. (2011) VapC6, a ribonucleolytic toxin regulates thermophilicity in the crenarchaeote Sulfolobus solfataricus. RNA, 17, 1381-1392
-
(2011)
RNA
, vol.17
, pp. 1381-1392
-
-
Maezato, Y.1
Daugherty, A.2
Dana, K.3
Soo, E.4
Cooper, C.5
Tachdjian, S.6
-
17
-
-
34548488930
-
Hypothetical functions of toxin-antitoxin systems
-
Magnuson, R. D. (2007). Hypothetical functions of toxin-antitoxin systems. Journal of Bacteriology, 189, 6089-6092
-
(2007)
Journal of Bacteriology
, vol.189
, pp. 6089-6092
-
-
Magnuson, R.D.1
-
18
-
-
80052016172
-
Bacterial persistence by RNA endonucleases
-
USA
-
Maisonneuve, E., Shakespeare, L. J., Jørgensen, M. G., & Gerdes, K. (2011). Bacterial persistence by RNA endonucleases. Proceedings of National Academic of Sciences USA, 108, 13206-13211
-
(2011)
Proceedings of National Academic of Sciences
, vol.108
, pp. 13206-13211
-
-
Maisonneuve, E.1
Shakespeare, L.J.2
Jørgensen, M.G.3
Gerdes, K.4
-
19
-
-
33750420023
-
The hicab cassette, a putative novel, rna targeting toxin-antitoxin system in archaea and bacteria
-
Makarova, K. S., Grishin, N. V., & Koonin, E. V. (2009a). The HicAB cassette, a putative novel, RNA targeting toxin-antitoxin system in archaea and bacteria. Bioinformatics, 22, 2581-2584
-
(2009)
Bioinformatics
, vol.22
, pp. 2581-2584
-
-
Makarova, K.S.1
Grishin, N.V.2
Koonin, E.V.3
-
20
-
-
67649933665
-
Comprehensive comparative-genomic analysis of type 2 toxin-antitoxin systems and related mobile stress response systems in prokaryotes
-
Makarova, K. S., Wolf, Y. I., & Koonin, E. V. (2009b). Comprehensive comparative-genomic analysis of type 2 toxin-antitoxin systems and related mobile stress response systems in prokaryotes. Biology Direct, 4, 19
-
(2009)
Biology Direct
, vol.4
, pp. 19
-
-
Makarova, K.S.1
Wolf, Y.I.2
Koonin, E.V.3
-
21
-
-
84861397933
-
Determination of ribonuclease sequence-specificity using pentaprobes and mass spectrometry
-
McKenzie, J. L., Duyvestyn, J. M., Smith, T., Bendak, K., Mackay, J., Cursons, R. et al. (2012). Determination of ribonuclease sequence-specificity using Pentaprobes and mass spectrometry. RNA, 18, 1267-1278
-
(2012)
RNA
, vol.18
, pp. 1267-1278
-
-
McKenzie, J.L.1
Duyvestyn, J.M.2
Smith, T.3
Bendak, K.4
Mackay, J.5
Cursons, R.6
-
22
-
-
78649649439
-
Toxin-antitoxin systems: why so many, what for
-
Melderen, L. V. (2010). Toxin-antitoxin systems: why so many, what for? Current Opinion in Microbiology, 13, 781-785
-
(2010)
Current Opinion in Microbiology
, vol.13
, pp. 781-785
-
-
Melderen, L.V.1
-
23
-
-
71149087505
-
The structural basis for mrna recognition and cleavage by the ribosome-dependent endonuclease rele
-
Neubauer, C., Gao, Y. G., Andersen, K. R., Dunham, C. M., Kelley, A. C., Hentschel, J., et al. (2009). The structural basis for mRNA recognition and cleavage by the ribosome-dependent endonuclease RelE. Cell, 139, 1084-1095
-
(2009)
Cell
, vol.139
, pp. 1084-1095
-
-
Neubauer, C.1
Gao, Y.G.2
Andersen, K.R.3
Dunham, C.M.4
Kelley, A.C.5
Hentschel, J.6
-
24
-
-
14244266086
-
Toxin-antitoxin loci are highly abundant in free-living but lost from host-associated prokaryotes
-
Pandey, D. P., & Gerdes, K. (2005). Toxin-antitoxin loci are highly abundant in free-living but lost from host-associated prokaryotes. Nucleic Acids Research, 33, 966-976
-
(2005)
Nucleic Acids Research
, vol.33
, pp. 966-976
-
-
Pandey, D.P.1
Gerdes, K.2
-
25
-
-
0036067108
-
Rapid induction and reversal of a bacteriostatic condition by controlled expression of toxins and antitoxins
-
Pedersen, K., Christensen, S. K., & Gerdes, K. (2002). Rapid induction and reversal of a bacteriostatic condition by controlled expression of toxins and antitoxins. Molecular Microbiology, 45, 501-510
-
(2002)
Molecular Microbiology
, vol.45
, pp. 501-510
-
-
Pedersen, K.1
Christensen, S.K.2
Gerdes, K.3
-
26
-
-
34548613266
-
Virus-host interactions in salt lakes
-
Porter, K., Russ, B. E., & Dyall-Smith, M. L. (2007). Virus-host interactions in salt lakes. Current Opinion in Microbiology, 10, 418-424
-
(2007)
Current Opinion in Microbiology
, vol.10
, pp. 418-424
-
-
Porter, K.1
Russ, B.E.2
Dyall-Smith, M.L.3
-
27
-
-
33750105412
-
Viruses of the archaea: A unifying view
-
Prangishvili, D., Forterre, P., & Garrett, R. A. (2006). Viruses of the archaea: A unifying view. Nature Reviews Microbiology, 11, 837-848
-
(2006)
Nature Reviews Microbiology
, vol.11
, pp. 837-848
-
-
Prangishvili, D.1
Forterre, P.2
Garrett, R.A.3
-
28
-
-
66649087973
-
Sulfolobus islandicus pan-genome
-
USA
-
Reno, M. L., Held, N. L., Fields, C. J., Burke, P. V., & Whitaker, R. J. (2009). Sulfolobus islandicus pan-genome. Proceedings of National Academic of Sciences, USA, 106, 8605-8610
-
(2009)
Proceedings of National Academic of Sciences
, vol.106
, pp. 8605-8610
-
-
Reno, M.L.1
Held, N.L.2
Fields, C.J.3
Burke, P.V.4
Whitaker, R.J.5
-
29
-
-
0028924641
-
Fine structure of the peptidyl transferase centre on 23 S-like rRNAs deduced from chemical probing of antibiotic-ribosome complexes
-
Rodriguez-Fonseca, C., Amils, R., & Garrett, R. A. (1995). Fine structure of the peptidyl transferase centre on 23 S-like rRNAs deduced from chemical probing of antibiotic-ribosome complexes. Journal of Molecular Biology, 247, 224-235
-
(1995)
Journal of Molecular Biology
, vol.247
, pp. 224-235
-
-
Rodriguez-Fonseca, C.1
Amils, R.2
Garrett, R.A.3
-
30
-
-
78149449833
-
Use of cellular crispr (clusters of regularly interspaced short palindromic repeats) spacer-based microarrays for detection of viruses in environmental samples
-
Snyder, J. C., Bateson, M. M., Lavin, M., & Young, M. J. (2010). Use of cellular CRISPR (clusters of regularly interspaced short palindromic repeats) spacer-based microarrays for detection of viruses in environmental samples. Applied and Environment Microbiology, 76, 7251-7258
-
(2010)
Applied and Environment Microbiology
, vol.76
, pp. 7251-7258
-
-
Snyder, J.C.1
Bateson, M.M.2
Lavin, M.3
Young, M.J.4
-
31
-
-
33947380915
-
Adaptations to energy stress dictate the ecology and evolution of archaea
-
Valentine, D. L. (2007). Adaptations to energy stress dictate the ecology and evolution of archaea. Nature Reviews Microbiology, 5, 316-323
-
(2007)
Nature Reviews Microbiology
, vol.5
, pp. 316-323
-
-
Valentine, D.L.1
-
32
-
-
24944525711
-
Neisseria gonorrheae fita interacts with fitb to bind dna through its ribbon-helix-helix motif
-
Wilbur, J. S., Chivers, P. T., Mattison, K., Potter, L., Brennan, R. G., & So, M. (2005). Neisseria gonorrheae FitA interacts with FitB to bind DNA through its ribbon-helix-helix motif. Biochemistry, 44, 12515-12524
-
(2005)
Biochemistry
, vol.44
, pp. 12515-12524
-
-
Wilbur, J.S.1
Chivers, P.T.2
Mattison, K.3
Potter, L.4
Brennan, R.G.5
So, M.6
-
33
-
-
79956328889
-
Enteric virulence associated protein vapc inhibits translation by cleavage of initiator trna
-
USA
-
Winther, K. S., & Gerdes, K. (2011). Enteric virulence associated protein VapC inhibits translation by cleavage of initiator tRNA. Proceedings of National Academic of Sciences, USA, 108, 7403-7407
-
(2011)
Proceedings of National Academic of Sciences
, vol.108
, pp. 7403-7407
-
-
Winther, K.S.1
Gerdes, K.2
-
34
-
-
28844505983
-
Characterization of the dna gyrase from the thermoacidophilic archaeon thermoplasma acidophilum
-
Yamashiro, K., & Yamagishi, A. (2005). Characterization of the DNA gyrase from the thermoacidophilic archaeon Thermoplasma acidophilum. Journal of Bacteriology, 187, 8531-8536
-
(2005)
Journal of Bacteriology
, vol.187
, pp. 8531-8536
-
-
Yamashiro, K.1
Yamagishi, A.2
-
35
-
-
79959371100
-
Genomic studies of acidianus hospitalis w1 a host for studying crenarchaeal virus and plasmid life cycles
-
You, X.-Y., Liu, C., Wang, S.-Y., Jiang, C.-Y., Shah, S. A., Prangishvili, D., et al. (2011). Genomic studies of Acidianus hospitalis W1 a host for studying crenarchaeal virus and plasmid life cycles. Extremophiles, 15, 487-497.
-
(2011)
Extremophiles
, vol.15
, pp. 487-497
-
-
You, X.-Y.1
Liu, C.2
Wang, S.-Y.3
Jiang, C.-Y.4
Shah, S.A.5
Prangishvili, D.6
|