Conservation analysis of the CydX protein yields insights into small protein identification and evolution

BMC Genomics

Volumn 15, Issue 1, 2014, Pages

  Allen, Rondine J ^a,b   Brenner, Evan P ^a,c   VanOrsdel, Caitlin E ^a   Hobson, Jessica J ^a   Hearn, David J ^a   Hemm, Matthew R ^a  

^a TOWSON UNIVERSITY   (United States)

^b UNIVERSITY OF IOWA   (United States)

^c UNIVERSITY OF MINNESOTA   (United States)

Author keywords

CydX; Cytochrome bd oxidase; Phylogenetics; Small protein conservation; Small proteins

Indexed keywords

CYTOCHROME; CYTOCHROME BD OXIDASE COMPLEX; PROTEIN CYDX; UNCLASSIFIED DRUG; CYTOCHROME BD TERMINAL OXIDASE COMPLEX, E COLI; ESCHERICHIA COLI PROTEIN; MULTIENZYME COMPLEX; OXIDOREDUCTASE;

ALPHAPROTEOBACTERIA; AMINO ACID SEQUENCE; ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM MUTANT; BETAPROTEOBACTERIA; BIOINFORMATICS; CONTROLLED STUDY; CYDA GENE; CYDABX GENE; CYDB GENE; CYDX GENE; DATA ANALYSIS SOFTWARE; ESCHERICHIA COLI; GAMMAPROTEOBACTERIA; GENE FUNCTION; GENE IDENTIFICATION; GENE TRANSFER; GENETIC CONSERVATION; GENETIC SCREENING; GENETIC VARIABILITY; HIDDEN MARKOV MODEL; MOLECULAR EVOLUTION; MOLECULAR SYSTEMATICS; NONHUMAN; OPEN READING FRAME; OPERON; PHYLOGENY; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN FOLDING; PROTEIN SUBUNIT; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; WEB BROWSER; ALLELE; BACTERIAL GENOME; BIOLOGY; CHEMICAL PHENOMENA; CHEMISTRY; DNA SEQUENCE; GENE ORDER; GENETIC COMPLEMENTATION; GENETICS; GENOMICS; HORIZONTAL GENE TRANSFER; METABOLISM; MOLECULAR GENETICS; MUTATION; NUCLEOTIDE SEQUENCE; POSITION WEIGHT MATRIX; PROBABILITY; PROCEDURES; PROTEOBACTERIA; SEQUENCE ALIGNMENT;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; GAMMAPROTEOBACTERIA; PROTEOBACTERIA;

ALLELES; AMINO ACID SEQUENCE; COMPUTATIONAL BIOLOGY; CONSERVED SEQUENCE; CYTOCHROMES; ELECTRON TRANSPORT CHAIN COMPLEX PROTEINS; ESCHERICHIA COLI PROTEINS; EVOLUTION, MOLECULAR; GENE ORDER; GENE TRANSFER, HORIZONTAL; GENETIC COMPLEMENTATION TEST; GENOME, BACTERIAL; GENOMICS; HYDROPHOBIC AND HYDROPHILIC INTERACTIONS; MARKOV CHAINS; MOLECULAR SEQUENCE ANNOTATION; MOLECULAR SEQUENCE DATA; MUTATION; OPERON; OXIDOREDUCTASES; PHYLOGENY; POSITION-SPECIFIC SCORING MATRICES; PROTEIN INTERACTION DOMAINS AND MOTIFS; PROTEOBACTERIA; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA;

EID: 84924334098     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-15-946     Document Type: Article

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