Application and assessment of optical clearing methods for imaging of tissue-engineered neural stem cell spheres

Tissue Engineering - Part C: Methods

Volumn 21, Issue 3, 2015, Pages 292-302

  Boutin, Molly E ^a,b   Hoffman Kim, Diane ^a,b  

^a BROWN UNIVERSITY   (United States)

^b BROWN UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CELL CULTURE; IMAGE ENHANCEMENT; LIGHT SCATTERING; SPHERES; STEM CELLS; TISSUE;

BIOLOGICAL DISCOVERIES; COMPUTATIONAL RECONSTRUCTION; HIGH CELL DENSITY; INTERNAL STRUCTURE; NEURAL STEM CELL; OPTICAL CLEARING; SAMPLE SHRINKAGES; THREE-DIMENSIONAL (3D) CELL CULTURE;

SCAFFOLDS (BIOLOGY);

MEMBRANE PROTEIN; MICROSPHERE; CADHERIN; LAMININ;

ADULT; ANIMAL CELL; ANIMAL TISSUE; ARTICLE; CELL CULTURE; CELL EXPANSION; CELL INTERACTION; CELL STRUCTURE; CELLS BY BODY ANATOMY; EXTRACELLULAR MATRIX; GLIOMA CELL; HIPPOCAMPUS; NEURAL STEM CELL; NONHUMAN; OPTICAL CLEARING METHOD; PRIORITY JOURNAL; RAT; SAMPLE SIZE; TISSUE ENGINEERING; TISSUE SCAFFOLD; ANIMAL; CELL SHAPE; CONFOCAL MICROSCOPY; CYTOLOGY; FLUORESCENCE IMAGING; METABOLISM; MULTICELLULAR SPHEROID; OPTICS; PROCEDURES; ULTRAMICROTOMY;

ANIMALS; CADHERINS; CELL SHAPE; CRYOULTRAMICROTOMY; LAMININ; MICROSCOPY, CONFOCAL; NEURAL STEM CELLS; OPTICAL IMAGING; OPTICS AND PHOTONICS; RATS; SPHEROIDS, CELLULAR; TISSUE ENGINEERING;

EID: 84924267645     PISSN: 19373384     EISSN: 19373392     Source Type: Journal    
DOI: 10.1089/ten.tec.2014.0296     Document Type: Article

References (36)

1. Nakatomi, H., Kuriu, T., Okabe, S., Yamamoto, S., Hatano, O., Kawahara, N., Tamura, A., Kirino, T., and Nakafuku, M. Regeneration of hippocampal pyramidal neurons after ischemic brain injury by recruitment of endogenous neural progenitors. Cell 110, 429, 2002.
2. Salman, H., Ghosh, P., and Kernie, S.G. Subventricular zone neural stem cells remodel the brain following traumatic injury in adult mice. J Neurotrauma 21, 283, 2004.
3. Doetsch, F. A niche for adult neural stem cells. Curr Opin Genet Dev 13, 543, 2003.
4. Temple, S. The development of neural stem cells. Nature 414, 112, 2001.
5. Ming, G.-L., and Song, H. Adult neurogenesis in the mammalian brain: significant answers and significant questions. Neuron 70, 687, 2011.
6. Sanai, N., Tramontin, A.D., Quinones-Hinojosa, A., Barbaro, N.M., Gupta, N., Sandeep, K., Lawton, M.T., McDermott, M.W., Parsa, A.T., Verdugo, J.M.-G., Berger, M.S., and Alvarez-Buylla, A. Unique astrocyte ribbon in adult human brain contains neural stem cells but lacks chain migration. Nature 427, 740, 2004.
7. Yoshimura, S., Teramoto, T., Whalen, M.J., Irizarry, M.C., Takagi, Y., Qiu, J., Harada, J., Waeber, C., Breakefield, X.O., and Moskowitz, M.A. FGF-2 regulates neurogenesis and degeneration in the dentate gyrus after traumatic brain injury in mice. J Clin Invest 112, 1202, 2003.
8. Yoshimura, S., Takagi, Y., Harada, J., Teramoto, T., Thomas, S.S., Waeber, C., Bakowska, J.C., Breakefield, X.O., and Moskowitz, M.A. FGF-2 regulation of neurogenesis in adult hippocampus after brain injury. Proc Natl Acad Sci USA 98, 5874, 2001.
9. Birgersdotter, A., Sandberg, R., and Ernberg, I. Gene expression perturbation in vitro-a growing case for three-dimensional (3D) culture systems. Semin Cancer Biol 15, 405, 2005.
10. Pampaloni, F., Reynaud, E.G., and Stelzer, E.H.K. The third dimension bridges the gap between cell culture and live tissue. Nat Rev Mol Cell Biol 8, 839, 2007.
11. Kim, J.B. Three-dimensional tissue culture models in cancer biology. Semin Cancer Biol 15, 365, 2005.
12. Achilli, T.-M., McCalla, S., Meyer, J., Tripathi, A., and Morgan, J.R. Multilayer spheroids to quantify drug uptake and diffusion in 3D. Mol Pharm 11, 2071, 2014.
13. Lancaster, M.A., Renner, M., Martin, C.-A., Wenzel, D., Bicknell, L.S., Hurles, M.E., Homfray, T., Penninger, J.M., Jackson, A.P., and Knoblich, J.A. Cerebral organoids model human brain development and microcephaly. Nature 501, 373, 2013.
14. Baraniak, P.R., and McDevitt, T.C. Scaffold-free culture of mesenchymal stem cell spheroids in suspension preserves multilineage potential. Cell Tissue Res 347, 701, 2012.
15. Ju, T., Warren, J., Carson, J., Bello, M., Kakadiaris, I., Chiu, W., Thaller, C., and Eichele, G. 3D volume reconstruction of a mouse brain from histological sections using warp filtering. J Neurosci Methods 156, 84, 2006.
16. Skoglund, T.S., Hammar, I., Olsson, C., and Berthold, C.H. A method for 2D reconstruction of intracellularly labeled neurons from sequential sections. J Neurosci Methods 53, 199, 1994.
17. Ourselin, S., Roche, A., Subsol, G., Pennec, X., and Ayache, N. Reconstructing a 3D structure from serial histological sections. Image Vis Comput 19, 25, 2000.
18. Kim, S.-Y., Chung, K., and Deisseroth, K. Light microscopy mapping of connections in the intact brain. Trends Cogn Sci 17, 596, 2013.
19. Tuchin, V. V. Optical clearing of tissues and blood using the immersion method. J Phys D Appl Phys 38, 2497, 2005.
20. Zhu, D., Larin, K. V., Luo, Q., and Tuchin, V.V. Recent progress in tissue optical clearing. Laser Photon Rev 7, 732, 2013.
21. Spalteholz, W. Über das Durchsichtigmachen von menschlichen und tierischen Präparaten und seine theoretischen Bedingungen. Hirzel, S., ed. Leipzig: Druck von Breitkopf & Härtel, 1914.
22. Dent, J.A., Polson, A.G., and Klymkowsky, M.W. A whole-mount immunocytochemical analysis of the expression of the intermediate filament protein vimentin in Xenopus. Development 105, 61, 1989.
23. Dodt, H.-U., Leischner, U., Schierloh, A., Jahrling, N., Mauch, C.P., Deininger, K., Deussing, J.M., Eder, M., Zieglgansberger, W., and Becker, K. Ultramicroscopy : three-dimensional visualization of neuronal networks in the whole mouse brain. Nat Methods 4, 331, 2007.
24. Hama, H., Kurokawa, H., Kawano, H., Ando, R., Shimogori, T., Noda, H., Fukami, K., Sakaue-Sawano, A., and Miyawaki, A. Scale: a chemical approach for fluorescence imaging and reconstruction of transparent mouse brain. Nat Neurosci 14, 1481, 2011.
25. Ertürk, A., Becker, K., Jährling, N., Mauch, C.P., Hojer, C.D., Egen, J.G., Hellal, F., Bradke, F., Sheng, M., and Dodt, H.-U. Three-dimensional imaging of solvent-cleared organs using 3DISCO. Nat Protoc 7, 1983, 2012.
26. Kuwajima, T., Sitko, A.A., Bhansali, P., Jurgens, C., Guido, W., and Mason, C. ClearT: a detergent- and solvent-free clearing method for neuronal and non-neuronal tissue. Development 140, 1364, 2013.
27. Chung, K., Wallace, J., Kim, S.-Y., Kalyanasundaram, S., Andalman, A.S., Davidson, T.J., Mirzabekov, J.J., Zalocusky, K.A., Mattis, J., Denisin, A.K., Pak, S., Bernstein, H., Ramakrishnan, C., Grosenick, L., Gradinaru, V., and Deisseroth, K. Structural and molecular interrogation of intact biological systems. Nature 497, 332, 2013.
28. Ke, M.-T., Fujimoto, S., and Imai, T. SeeDB: a simple and morphology-preserving optical clearing agent for neuronal circuit reconstruction. Nat Neurosci 16, 1154, 2013.
29. Napolitano, A.P., Chai, P., Dean, D.M., and Morgan, J.R. Dynamics of the self-assembly of complex cellular aggregates on micromolded nonadhesive hydrogels. Tissue Eng 13, 2087, 2007.
30. Kaida, A., and Miura, M. Visualizing the effect of tumor microenvironments on radiation-induced cell kinetics in multicellular spheroids consisting of HeLa cells. Biochem Biophys Res Commun 439, 453, 2013.
31. Cases, A.M., Marigliano, A.C.G., Bonatti, C.M., and Solimo, H.N. Density, viscosity, and refractive index of formamide, three carboxylic acids, and formamide+ carboxylic acid binary mixtures. J Chem Eng Data 46, 712, 2001.
32. Hell, S., Reiner, G., Cremer, C., and Stelzer, E.H.K. Aberrations in confocal fluorescence microscopy induced by mismatches in refractive index. J Microsc 169, 391, 1993.
33. Bucher, D., Scholz, M., Stetter, M., Obermayer, K., and Pflüger, H.J. Correction methods for three-dimensional reconstructions from confocal images: I. Tissue shrinking and axial scaling. J Neurosci Methods 100, 135, 2000.
34. Ertürk, A., Mauch, C.P., Hellal, F., Förstner, F., Keck, T., Becker, K., Jährling, N., Steffens, H., Richter, M., Hübener, M., Kramer, E., Kirchhoff, F., Dodt, H.U., and Bradke, F. Three-dimensional imaging of the unsectioned adult spinal cord to assess axon regeneration and glial responses after injury. Nat Med 18, 166, 2012.
35. Calle, E.A., Vesuna, S., Dimitrievska, S., Zhou, K., Huang, A., Zhao, L., Niklason, L.E., and Levene, M.J. The use of optical clearing and multiphoton microscopy for investigation of three-dimensional tissue-engineered constructs. Tissue Eng Part C 00, 1, 2014.
36. Chen, Y., Tsai, Y.H., Liu, Y.A., Lee, S.H., Tseng, S.H., and Tang, S.C. Application of three-dimensional imaging to the intestinal crypt organoids and biopsied intestinal tissues. Sci World J 2013, 2013.