CRISPR/Cas9-mediated genome modification in the mollusc, Crepidula fornicata

Genesis

Volumn 53, Issue 2, 2015, Pages 237-244

  Perry, Kimberly J ^a   Henry, Jonathan Q ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

Author keywords

Crepidula fornicata; CRISPR Cas9; Knock in; Mollusc; Spiralia

Indexed keywords

BETA CATENIN; PHOTOPROTEIN; RED FLUORESCENT PROTEIN;

ADULT; ANIMAL EXPERIMENT; ARTICLE; CONTROLLED STUDY; CREPIDULA FORNICATA; CRISPR CAS SYSTEM; DNA MODIFICATION; EMBRYO; EMBRYO DEVELOPMENT; FORNICATA; GENE SEQUENCE; GENE TARGETING; GENETIC CODE; HOMOLOGOUS RECOMBINATION; LOPHOTROCHOZOA; LOPHOTROCHOZOA SUPERPHYLUM; MOLLUSC; MOUSE; NONHUMAN; PRIORITY JOURNAL; TRANSGENICS; ANIMAL; BIOSYNTHESIS; CLUSTERED REGULARLY INTERSPACED SHORT PALINDROMIC REPEAT; GENE EXPRESSION; GENETIC ENGINEERING; GENETICS; GENOME; REPORTER GENE; TRANSGENIC ANIMAL;

CREPIDULA FORNICATA; LOPHOTROCHOZOA; MOLLUSCA; SPIRALIA;

ANIMALS; ANIMALS, GENETICALLY MODIFIED; BETA CATENIN; CLUSTERED REGULARLY INTERSPACED SHORT PALINDROMIC REPEATS; GENE EXPRESSION; GENE KNOCK-IN TECHNIQUES; GENES, REPORTER; GENETIC ENGINEERING; GENOME; HOMOLOGOUS RECOMBINATION; LUMINESCENT PROTEINS; MOLLUSCA;

EID: 84924018418     PISSN: 1526954X     EISSN: 1526968X     Source Type: Journal    
DOI: 10.1002/dvg.22843     Document Type: Article

References (38)

1. Backfisch B, Veedin Rajan VB, Fischer RM, Lohs C, Arboleda E, Tessmar-Raible K, Raible F. 2013. Stable transgenesis in the marine annelid Platynereis dumerilii sheds new light on photoreceptor evolution. Proc Natl Acad Sci USA 110:193-198.
2. Bassett AR, Tibbit C, Ponting CP, Liu JL. 2013. Highly efficient targeted mutagenesis of Drosophila with the CRISPR/Cas9 system. Cell Rep 4:220-228.
3. Blitz IL, Biesinger J, Xie X, Cho KW. 2013. Biallelic genome modification in F(0) Xenopus tropicalis embryos using the CRISPR/Cas system. Genesis 51:827-834.
4. Chen C, Fenk LA, de Bono M. 2013. Efficient genome editing in Ceanorhabditis elegans by CRISPR-targeted homologous recombination. Nucleic Acids Res 41:e193.
5. Deltcheva E, Chylinski K, Sharma CM, Gonzales K, Chao Y, Pirzada ZA, Eckert MR, Vogel J, Charpentier E. 2011. CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III. Nature 471:602-607.
6. Dickinson DJ, Ward JD, Reiner DJ, Goldstein B. 2013. Engineering the Caenorhabditis elegans genome using Cas9-triggered homologous recombination. Nat Methods 10:1028-1034.
7. Friedland AE, Tsur YB, Esvelt KM, Colaiácovo MP, Church GM, Calarco JA. 2013. Heritable genome editing in C. elegans via a CRISPR-Cas9 system. Nat Methods 10:741-743.
8. Gibson DG, Young L, Chuang RY, Venter JC, Hutchison CA, III, Smith HO. 2009. Enzymatic assembly of DNA molecules up to several hundred kilobases. Nat Methods 6:343-345.
9. González-Estévez C, Momose T, Gehring WJ, Saló E. 2003. Transgenic planarian lines obtained by electroporation using transposon-derived vectors and an eye-specific GFP marker. Proc Natl Acad Sci USA 100:14046-14051.
10. Guo X, Zhang T, Hu Z, Zhang Y, Shi Z, Wang Q, Cui Y, Wang F, Zhao H, Chen Y. 2014. Efficient RNA/Cas9-mediated genome editing in Xenopus tropicalis. Development 141:707-714.
11. Hejnol A, Martindale MQ, Henry JQ. 2007. High resolution fate map of the gastropod snail, Crepidula fornicata. Origins of ciliary bands, nervous and musculature elements. Dev Biol 305:63-76.
12. Henry JJ, Perry KJ, Fukui L, Alvi N. 2010c. Differential localization of mRNAs during early development in the mollusc, Crepidula fornicata. Integr Comp Biol 5:720-733.
13. Henry JQ, Collin R, Perry KJ. 2010a. The Slipper Snail, Crepidula: An Emerging Lophotrochozoan Model System. Biol Bull 218:211-229.
14. Henry JQ, Collin R, Perry KJ. 2010b. Methods for Working with the Slipper snail, Crepidula: An Emerging Lophotrochozoan Model System. Biol Bull. Available at: www.life.illinois.edu/henry/crepidula_methods.html, see also http://biogeodb.stri.si.edu/bioinformatics/dfm/metas/view/ 38301.
15. Henry JQ, Perry KJ, Martindale MQ. 2006. Cell specification and the role of the polar lob in the gastropod mollusc Crepidula fornicata. Dev Biol 297:295-307.
16. Henry JQ, Perry KJ, Martindale MQ. 2010d. Beta-catenin and early development in the gastropod, Crepidula fornicata. Integr Comp Biol 5:707-719.
17. Hruscha A, Krawitz P, Rechenberg A, Heinrich V, Hecht J, Haass C, Schmid B. 2013. Efficient CRISPR/Cas9 genome editing with low off-target effects in zebrafish. Development 140:4982-4987.
18. Hwang WY, Fu Y, Reyon D, Maeder ML, Kaini P, Sander JD, Joung JK, Peterson RT, Yeh JR. 2013. Heritable and precise zebrafish genome editing using a CRISPR-Cas system. PLoS ONE 8:e68708.
19. Ikmi A, McKinney SA, Delventhal KM, Gibson MC. 2014. TALEN and CRISPR/Cas9-mediated genome editing in the early branching metazoan Nematostella vectensis. Nat Commun 5:5486.
20. Jansen R, Embden JD, Gaastra W, Schouls LM. 2002. Identification of genes that are associated with DNA repeats in prokaryotes. Mol Microbiol 43:1565-1575.
21. Jao LE, Wente SR, Chen W. 2013. Efficient multiplex biallelic zebrafish genome editing using a CRISPR nuclease system. Proc Natl Acad Sci USA 110:13904-13909.
22. Jinek M, Chylinksi K, Fonfara I, Hauer M, Doudna JA, Charpentier E. 2012. A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 337:816-821.
23. Kimura Y, Hisano Y, Kawahara A, Higashijima S. 2014. Efficient generation of knock-in transgenic zebrafish carrying reporter/driver genes by CRISPR/Cas9-mediated genome engineering. Sci Rep 4:6545. doi: 10/1038/srep06545.
24. Kunick C, Lauenroth K, Leost M, Meijer L, Lemcke T. 2004. 1-Azakenpaullone is a selective inhibitor of glycogen synthase kinase- 3 b. Bioorg Med Chem Lett 14:413-416.
25. Larson MH, Gilbert LA, Wang X, Lim WA, Weissmen JS, Qi LS. 2013. CRISPR interference (CRISPRi) for sequence-specific control of gene expression. Nat Protoc 8:2180-2196.
26. Leost M, Schultz C, Link A, Wu YZ, Biernat J, Mandelkow EM, Bibb JA, Snyder GL, Greengard P, Zaharevitz DW, Gussio R, Senderowicz AM, Sausville EA, Kunick C, Meijer L. (2000). Paullones are potent inhibitors of glycogen synthase kinase-3b and cyclin-dependent kinase 5/p25. Eur J Biochem 267:5983-5994.
27. Li D, Qiu Z, Shao Y, Chen Y, Guan Y, Liu M, Li Y, Gao N, Mang L, Lu X, Zhao Y, Liu M. 2013. Heritable gene targeting in the mouse and rat using a CRISPR-Cas system. Nat Biotechnol 31:681-683.
28. Lyons DC, Perry KJ, Lesoway MP, Henry JQ. 2012. Cleavage pattern and fate map of the mesentoblast, 4d, in the gastropod Crepidula: A hallmark of spiralian development. EvoDevo 3:21. Doi: 10.1186/2041-9139-3-21.
29. Mali P, Yang L, Esvelt KM, Aach J, Guell M, DiCarlo JW, Norville JE, Church GM. 2013. RNA-guided human genome engineering via Cas9. Science 339:823-826.
30. Nakayama T, Fish MB, Fisher M, Oomen-Hajagos J, Thomsen GH, Grainger RM. 2013. Simple and efficient CRISPR/Cas9-mediated targeted mutagenesis in Xenopus tropicalis. Genesis 51:835-843.
31. Ran FA, Hsu PD, Wright J, Agarwala V, Scott DA, Zhang F. 2013. Genome engineering using the CRISPR-Cas9 system. Nat Protoc 8:2281-2308.
32. Schneider S, Steinbeisser H, Warga RM, Hausen P. 1996. b-catenin translocation into nuclei demarcates the dorsalizing centers in frog and fish embryos. Mech Dev 57:191-198.
33. Stolfi A, Gandhi S, Salek F, Christiaen L. 2014. Tissue-specific genome editing in Ciona embryos by CRISPR/Cas9. Development 141:4115-4120.
34. Wang H, Yang H, Shivalila CS, Dawlaty MM, Cheng AW, Zhang F, Jaenisch R. 2013. One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering. Cell 153:910-918.
35. Wiedenheft B, Sternberg SH, Doudna JA. 2012. RNA-guided genetic silencing systems in bacteria and archaea. Nature 482:331-338.
36. Yang H, Wang H, Shivalila CS, Cheng AW, Shi L, Jaenisch R. 2013. One-step generation of mice carrying reporter and conditional alleles by CRISPR/Cas-mediated genome engineering. Cell 153:910-918.
37. Yasue A, Mistui SN, Watanabe T, Sakuma T, Oyadomari S, Yamamoto T, Noji W, Mito T, Tanaka E. 2014. Highly efficient targeted mutagenesis in one-cell mouse embryos mediated by the TALEN and CRISPR/Cas systems. Sci Rep 4:5705. doi:10.1038/srep05705.
38. Yen ST, Zhang M, Deng JM, Usman SJ, Smith CN, Parker-Thornburg J, Swinton PG, Martin JF, Behringer RR. 2014. Somatic mosaicism and allele complexity induced byCRISPR/Cas9 RNA injections in mouse zygotes. Dev Biol 393:3-9.