-
1
-
-
33845895536
-
The frequency of translational misreading errors in E. coli is largely determined by tRNA competition
-
DOI 10.1261/rna.294907
-
Kramer, E. B. & Farabaugh, P. J. (2007). The frequency of translational misreading errors in E. coli is largely determined by tRNA competition. RNA, 13, 87-96. (Pubitemid 46026183)
-
(2007)
RNA
, vol.13
, Issue.1
, pp. 87-96
-
-
Kramer, E.B.1
Farabaugh, P.J.2
-
2
-
-
75849164401
-
Mutants that affect recoding
-
Atkins, J.F., Gesteland, R.F., eds, Springer, New York, Dordrecht, Heidelberg, London
-
Dinman, J. D. & O'Connor, M. (2010). Mutants that affect recoding. In Recoding: Expansion of Decoding Rules Enriches Gene Expression (Atkins, J.F., Gesteland, R.F., eds), pp. 321-344, Springer, New York, Dordrecht, Heidelberg, London.
-
(2010)
Recoding: Expansion of Decoding Rules Enriches Gene Expression
, pp. 321-344
-
-
Dinman, J.D.1
O'Connor, M.2
-
3
-
-
0024722501
-
Errors and alternatives in reading the universal genetic code
-
Parker, J. (1989). Errors and alternatives in reading the universal genetic code. Microbiol. Rev. 53, 273-298.
-
(1989)
Microbiol. Rev.
, vol.53
, pp. 273-298
-
-
Parker, J.1
-
4
-
-
0036431723
-
Compensatory adaptation to the deleterious effect of antibiotic resistance in Salmonella typhimurium
-
Maisnier-Patin, S., Berg, O. G., Liljas, L. & Andersson, D. I. (2002). Compensatory adaptation to the deleterious effect of antibiotic resistance in Salmonella typhimurium. Mol. Microbiol. 46, 355-366.
-
(2002)
Mol. Microbiol.
, vol.46
, pp. 355-366
-
-
Maisnier-Patin, S.1
Berg, O.G.2
Liljas, L.3
Andersson, D.I.4
-
5
-
-
0035367324
-
Streptomycin-resistant and streptomycin-dependent mutants of the extreme thermophile Thermus thermophilus
-
Gregory, S. T., Cate, J. H. & Dahlberg, A. E. (2001). Streptomycin-resistant and streptomycin-dependent mutants of the extreme thermophile Thermus thermophilus. J. Mol. Biol. 309, 333-338.
-
(2001)
J. Mol. Biol.
, vol.309
, pp. 333-338
-
-
Gregory, S.T.1
Cate, J.H.2
Dahlberg, A.E.3
-
6
-
-
18844413446
-
Structural insights into translational fidelity
-
Ogle, J. M. & Ramakrishnan, V. (2005). Structural insights into translational fidelity. Annu. Rev. Biochem. 74, 129-177.
-
(2005)
Annu. Rev. Biochem.
, vol.74
, pp. 129-177
-
-
Ogle, J.M.1
Ramakrishnan, V.2
-
7
-
-
0034884129
-
Construction of an in vivo nonsense readthrough assay system and functional analysis of ribosomal proteins S12, S4, and S5 in Bacillus subtilis
-
DOI 10.1128/JB.183.17.4958-4963.2001
-
Inaoka, T., Kasai, K. & Ochi, K. (2001). Construction of an in vivo nonsense readthrough assay system and functional analysis of ribosomal proteins S12, S4, and S5 in Bacillus subtilis. J. Bacteriol. 183, 4958-4963. (Pubitemid 32750921)
-
(2001)
Journal of Bacteriology
, vol.183
, Issue.17
, pp. 4958-4963
-
-
Inaoka, T.1
Kasai, K.2
Ochi, K.3
-
8
-
-
0024457174
-
Chloroplast ribosomal protein gene rps12 of Chlamydomonas reinhardtii. Wild-type sequence, mutation to streptomycin resistance and dependence, and function in Escherichia coli
-
Liu, X. Q., Gillham, N. W. & Boynton, J. E. (1989). Chloroplast ribosomal protein gene rps12 of Chlamydomonas reinhardtii. Wild-type sequence, mutation to streptomycin resistance and dependence, and function in Escherichia coli. J. Biol. Chem. 264, 16100-16108.
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 16100-16108
-
-
Liu, X.Q.1
Gillham, N.W.2
Boynton, J.E.3
-
9
-
-
0021716708
-
Kinetic impairment of restrictive streptomycin-resistant ribosomes
-
Bohman, K., Ruusala, T., Jelenc, P. C. & Kurland, C. G. (1984). Kinetic impairment of restrictive streptomycin-resistant ribosomes. Mol. Gen. Genet. 198, 90-99.
-
(1984)
Mol. Gen. Genet.
, vol.198
, pp. 90-99
-
-
Bohman, K.1
Ruusala, T.2
Jelenc, P.C.3
Kurland, C.G.4
-
10
-
-
77954298382
-
Hyperaccurate and error-prone ribosomes exploit distinct mechanisms during tRNA selection
-
Zaher, H. S. & Green, R. (2010). Hyperaccurate and error-prone ribosomes exploit distinct mechanisms during tRNA selection. Mol. Cell, 39, 110-120.
-
(2010)
Mol. Cell
, vol.39
, pp. 110-120
-
-
Zaher, H.S.1
Green, R.2
-
11
-
-
0014674086
-
A ribosomal ambiguity mutation
-
Rosset, R. & Gorini, L. (1969). A ribosomal ambiguity mutation. J. Mol. Biol. 39, 95-112.
-
(1969)
J. Mol. Biol.
, vol.39
, pp. 95-112
-
-
Rosset, R.1
Gorini, L.2
-
12
-
-
0016792246
-
Effect of different mutations in ribosomal protein S5 of Escherichia coli on translational fidelity
-
Piepersberg, W., Bock, A. & Wittmann, H. G. (1975). Effect of different mutations in ribosomal protein S5 of Escherichia coli on translational fidelity. Mol. Gen. Genet. 140, 91-100.
-
(1975)
Mol. Gen. Genet.
, vol.140
, pp. 91-100
-
-
Piepersberg, W.1
Bock, A.2
Wittmann, H.G.3
-
13
-
-
0022466410
-
Functional interactions between mutated forms of ribosomal proteins S4, S5 and S12
-
Andersson, D. I., Andersson, S. G. & Kurland, C. G. (1986). Functional interactions between mutated forms of ribosomal proteins S4, S5 and S12. Biochimie, 68, 705-713.
-
(1986)
Biochimie
, vol.68
, pp. 705-713
-
-
Andersson, D.I.1
Andersson, S.G.2
Kurland, C.G.3
-
14
-
-
0032896612
-
Novel ribosomal mutations affecting translational accuracy, antibiotic resistance and virulence of Salmonella typhimurium
-
Bjorkman, J., Samuelsson, P., Andersson, D. I. & Hughes, D. (1999). Novel ribosomal mutations affecting translational accuracy, antibiotic resistance and virulence of Salmonella typhimurium. Mol. Microbiol. 31, 53-58.
-
(1999)
Mol. Microbiol.
, vol.31
, pp. 53-58
-
-
Bjorkman, J.1
Samuelsson, P.2
Andersson, D.I.3
Hughes, D.4
-
15
-
-
33747886005
-
The ribosome's response to codon-anticodon mismatches
-
Daviter, T., Gromadski, K. B. & Rodnina, M. V. (2006). The ribosome's response to codon-anticodon mismatches. Biochimie, 88, 1001-1011.
-
(2006)
Biochimie
, vol.88
, pp. 1001-1011
-
-
Daviter, T.1
Gromadski, K.B.2
Rodnina, M.V.3
-
16
-
-
25644455262
-
Fidelity in protein synthesis
-
Cochella, L. & Green, R. (2005). Fidelity in protein synthesis. Curr. Biol. 15, R536-R540.
-
(2005)
Curr. Biol.
, vol.15
-
-
Cochella, L.1
Green, R.2
-
17
-
-
0035805229
-
Recognition of cognate transfer RNA by the 30S ribosomal subunit
-
DOI 10.1126/science.1060612
-
Ogle, J. M., Brodersen, D. E., Clemons, W. M., Jr, Tarry, M. J., Carter, A. P. & Ramakrishnan, V. (2001). Recognition of cognate transfer RNA by the 30S ribosomal subunit. Science, 292, 897-902. (Pubitemid 32422480)
-
(2001)
Science
, vol.292
, Issue.5518
, pp. 897-902
-
-
Ogle, J.M.1
Brodersen, D.E.2
Clemons Jr., W.M.3
Tarry, M.J.4
Carter, A.P.5
Ramakrishnan, V.6
-
18
-
-
0037184536
-
Selection of tRNA by the ribosome requires a transition from an open to a closed form
-
DOI 10.1016/S0092-8674(02)01086-3
-
Ogle, J. M., Murphy, F. V., Tarry, M. J. & Ramakrishnan, V. (2002). Selection of tRNA by the ribosome requires a transition from an open to a closed form. Cell, 111, 721-732. (Pubitemid 35446316)
-
(2002)
Cell
, vol.111
, Issue.5
, pp. 721-732
-
-
Ogle, J.M.1
Murphy IV, F.V.2
Tarry, M.J.3
Ramakrishnan, V.4
-
19
-
-
0025866195
-
Mutant ribosomes can generate dominant kirromycin resistance
-
Tubulekas, I., Buckingham, R. H. & Hughes, D. (1991). Mutant ribosomes can generate dominant kirromycin resistance. J. Bacteriol. 173, 3635-3643.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 3635-3643
-
-
Tubulekas, I.1
Buckingham, R.H.2
Hughes, D.3
-
20
-
-
35748984942
-
Mutational analysis of S12 protein and implications for the accuracy of decoding by the ribosome
-
Sharma, D., Cukras, A. R., Rogers, E. J., Southworth, D. R. & Green, R. (2007). Mutational analysis of S12 protein and implications for the accuracy of decoding by the ribosome. J. Mol. Biol. 374, 1065-1076.
-
(2007)
J. Mol. Biol.
, vol.374
, pp. 1065-1076
-
-
Sharma, D.1
Cukras, A.R.2
Rogers, E.J.3
Southworth, D.R.4
Green, R.5
-
21
-
-
66449107983
-
Accuracy modulating mutations of the ribosomal protein S4-S5 interface do not necessarily destabilize the rps4-rps5 protein-protein interaction
-
Vallabhaneni, H. & Farabaugh, P. J. (2009). Accuracy modulating mutations of the ribosomal protein S4-S5 interface do not necessarily destabilize the rps4-rps5 protein-protein interaction. RNA, 15, 1100-1109.
-
(2009)
RNA
, vol.15
, pp. 1100-1109
-
-
Vallabhaneni, H.1
Farabaugh, P.J.2
-
22
-
-
70350588648
-
The crystal structure of the ribosome bound to EF-Tu and aminoacyl-tRNA
-
Schmeing, T. M., Voorhees, R. M., Kelley, A. C., Gao, Y. G., Murphy, F. V. t., Weir, J. R. & Ramakrishnan, V. (2009). The crystal structure of the ribosome bound to EF-Tu and aminoacyl-tRNA. Science, 326, 688-694.
-
(2009)
Science
, vol.326
, pp. 688-694
-
-
Schmeing, T.M.1
Voorhees, R.M.2
Kelley, A.C.3
Gao, Y.G.4
Murphy, F.V.T.5
Weir, J.R.6
Ramakrishnan, V.7
-
23
-
-
69249112231
-
Structures of the ribosome in intermediate states of ratcheting
-
Zhang, W., Dunkle, J. A. & Cate, J. H. (2009). Structures of the ribosome in intermediate states of ratcheting. Science, 325, 1014-1017.
-
(2009)
Science
, vol.325
, pp. 1014-1017
-
-
Zhang, W.1
Dunkle, J.A.2
Cate, J.H.3
-
24
-
-
0034699519
-
Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics
-
Carter, A. P., Clemons, W. M., Brodersen, D. E., Morgan-Warren, R. J., Wimberly, B. T. & Ramakrishnan, V. (2000). Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics. Nature, 407, 340-348.
-
(2000)
Nature
, vol.407
, pp. 340-348
-
-
Carter, A.P.1
Clemons, W.M.2
Brodersen, D.E.3
Morgan-Warren, R.J.4
Wimberly, B.T.5
Ramakrishnan, V.6
-
25
-
-
0027323589
-
Double, independent mutational events in the rpsL gene of Escherichia coli: An example of hypermutability?
-
Timms, A. R. & Bridges, B. A. (1993). Double, independent mutational events in the rpsL gene of Escherichia coli: an example of hypermutability? Mol. Microbiol. 9, 335-342. (Pubitemid 23228856)
-
(1993)
Molecular Microbiology
, vol.9
, Issue.2
, pp. 335-342
-
-
Timms, A.R.1
Bridges, B.A.2
-
26
-
-
0025916683
-
Mutations in the 915 region of Escherichia coli 16S ribosomal RNA reduce the binding of streptomycin to the ribosome
-
Leclerc, D., Melancon, P. & Brakier-Gingras, L. (1991). Mutations in the 915 region of Escherichia coli 16S ribosomal RNA reduce the binding of streptomycin to the ribosome. Nucleic Acids Res. 19, 3973-3977. (Pubitemid 21912769)
-
(1991)
Nucleic Acids Research
, vol.19
, Issue.14
, pp. 3973-3977
-
-
Leclerc, D.1
Melancon, P.2
Brakier-Gingras, L.3
-
27
-
-
0023689711
-
A mutation in the 530 loop of Escherichia coli 16S ribosomal RNA causes resistance to streptomycin
-
Melancon, P., Lemieux, C. & Brakier-Gingras, L. (1988). A mutation in the 530 loop of Escherichia coli 16S ribosomal RNA causes resistance to streptomycin. Nucleic Acids Res. 16, 9631-9639.
-
(1988)
Nucleic Acids Res.
, vol.16
, pp. 9631-9639
-
-
Melancon, P.1
Lemieux, C.2
Brakier-Gingras, L.3
-
28
-
-
58249120107
-
A signal relay between ribosomal protein S12 and elongation factor EF-Tu during decoding of mRNA
-
Gregory, S. T., Carr, J. F. & Dahlberg, A. E. (2009). A signal relay between ribosomal protein S12 and elongation factor EF-Tu during decoding of mRNA. RNA, 15, 208-214.
-
(2009)
RNA
, vol.15
, pp. 208-214
-
-
Gregory, S.T.1
Carr, J.F.2
Dahlberg, A.E.3
-
29
-
-
18244364594
-
Severity of the streptomycin resistance and streptomycin dependence phenotypes of ribosomal protein S12 of Thermus thermophilus depends on the identity of highly conserved amino acid residues
-
DOI 10.1128/JB.187.10.3548-3550.2005
-
Carr, J. F., Gregory, S. T. & Dahlberg, A. E. (2005). Severity of the streptomycin resistance and streptomycin dependence phenotypes of ribosomal protein S12 of Thermus thermophilus depends on the identity of highly conserved amino acid residues. J. Bacteriol. 187, 3548-3550. (Pubitemid 40628712)
-
(2005)
Journal of Bacteriology
, vol.187
, Issue.10
, pp. 3548-3550
-
-
Carr, J.F.1
Gregory, S.T.2
Dahlberg, A.E.3
-
30
-
-
0034612342
-
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
-
Datsenko, K. A. & Wanner, B. L. (2000). One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl Acad. Sci. USA, 97, 6640-6645.
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 6640-6645
-
-
Datsenko, K.A.1
Wanner, B.L.2
-
31
-
-
70349195834
-
Variations in MIC value caused by differences in experimental protocol
-
Schuurmans, J. M., Nuri Hayali, A. S., Koenders, B. B. & ter Kuile, B. H. (2009). Variations in MIC value caused by differences in experimental protocol. J. Microbiol. Methods, 79, 44-47.
-
(2009)
J. Microbiol. Methods
, vol.79
, pp. 44-47
-
-
Schuurmans, J.M.1
Nuri Hayali, A.S.2
Koenders, B.B.3
Ter Kuile, B.H.4
-
32
-
-
75749084022
-
Mutagenesis of the modified bases, m(5)U1939 and psi2504, in Escherichia coli 23S rRNA
-
Persaud, C., Lu, Y., Vila-Sanjurjo, A., Campbell, J. L., Finley, J. & O'Connor, M. (2010). Mutagenesis of the modified bases, m(5)U1939 and psi2504, in Escherichia coli 23S rRNA. Biochem. Biophys. Res. Commun. 392, 223-227.
-
(2010)
Biochem. Biophys. Res. Commun.
, vol.392
, pp. 223-227
-
-
Persaud, C.1
Lu, Y.2
Vila-Sanjurjo, A.3
Campbell, J.L.4
Finley, J.5
O'Connor, M.6
-
33
-
-
0030763966
-
Decoding fidelity at the ribosomal A and P sites: Influence of mutations in three different regions of the decoding domain in 16S rRNA
-
DOI 10.1093/nar/25.6.1185
-
O'Connor, M., Thomas, C. L., Zimmermann, R. A. & Dahlberg, A. E. (1997). Decoding fidelity at the ribosomal A and P sites: influence of mutations in three different regions of the decoding domain in 16S rRNA. Nucleic Acids Res. 25, 1185-1193. (Pubitemid 27303210)
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.6
, pp. 1185-1193
-
-
O'Connor, M.1
Thomas, C.L.2
Zimmermann, R.A.3
Dahlberg, A.E.4
-
34
-
-
0027484278
-
An accuracy center in the ribosome conserved over 2 billion years
-
Alksne, L. E., Anthony, R. A., Liebman, S. W. & Warner, J. R. (1993). An accuracy center in the ribosome conserved over 2 billion years. Proc. Natl Acad. Sci. USA, 90, 9538-9541.
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 9538-9541
-
-
Alksne, L.E.1
Anthony, R.A.2
Liebman, S.W.3
Warner, J.R.4
-
35
-
-
33846317719
-
Compensatory evolution reveals functional interactions between ribosomal proteins S12, L14 and L19
-
Maisnier-Patin, S., Paulander, W., Pennhag, A. & Andersson, D. I. (2007). Compensatory evolution reveals functional interactions between ribosomal proteins S12, L14 and L19. J. Mol. Biol. 366, 207-215.
-
(2007)
J. Mol. Biol.
, vol.366
, pp. 207-215
-
-
Maisnier-Patin, S.1
Paulander, W.2
Pennhag, A.3
Andersson, D.I.4
-
36
-
-
0026585727
-
Mutant sequences in the rpsL gene of Escherichia coli B/r: Mechanistic implications for spontaneous and ultraviolet light mutagenesis
-
Timms, A. R., Steingrimsdottir, H., Lehmann, A. R. & Bridges, B. A. (1992). Mutant sequences in the rpsL gene of Escherichia coli B/r: mechanistic implications for spontaneous and ultraviolet light mutagenesis. Mol. Gen. Genet. 232, 89-96.
-
(1992)
Mol. Gen. Genet.
, vol.232
, pp. 89-96
-
-
Timms, A.R.1
Steingrimsdottir, H.2
Lehmann, A.R.3
Bridges, B.A.4
-
37
-
-
0016710637
-
Cooperative control of translational fidelity by ribosomal proteins in Escherichia coli. II. Localization of amino acid replacements in proteins S5 and S12 altered in double mutants resistant to neamine
-
Yaguchi, M., Wittmann, H. G., Cabezon, T., De Wilde, M., Villarroel, R., Herzog, A. & Bollen, A. (1975). Cooperative control of translational fidelity by ribosomal proteins in Escherichia coli. II. Localization of amino acid replacements in proteins S5 and S12 altered in double mutants resistant to neamine. Mol. Gen. Genet. 142, 35-43.
-
(1975)
Mol. Gen. Genet.
, vol.142
, pp. 35-43
-
-
Yaguchi, M.1
Wittmann, H.G.2
Cabezon, T.3
De Wilde, M.4
Villarroel, R.5
Herzog, A.6
Bollen, A.7
-
38
-
-
84886628776
-
Alteration of ribosomal protein S17 by mutation linked to neamine resistance in Escherichia coli. II. Localization of the amino acid replacement in protein S17 from a meaA mutant
-
Yaguchi, M., Wittmann, H. G., Cabezon, T., DeWilde, M., Villarroel, R., Herzog, A. & Bollen, A. (1976). Alteration of ribosomal protein S17 by mutation linked to neamine resistance in Escherichia coli. II. Localization of the amino acid replacement in protein S17 from a meaA mutant. J. Mol. Biol. 104, 617-620.
-
(1976)
J. Mol. Biol.
, vol.104
, pp. 617-620
-
-
Yaguchi, M.1
Wittmann, H.G.2
Cabezon, T.3
DeWilde, M.4
Villarroel, R.5
Herzog, A.6
Bollen, A.7
|